Rmu_ssc0000155.1_g000010

Remorin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000155.1
OG0011763
Physical Location & Seq
Forward (+)
36979 .. 38685
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000155.1_g000010.1.cds

Sequence Viewer

Length: 624 bp
atggcagaggcagaggaacccaagaagcaggtactagaatccgaaaaaccctccgatcttcctccagctccggccacggctacaacatcatcagaagagaagccggtggttgtggaagctccgaaagaggagtacaaagagaaatcagaagagaaggcgccaaagcctgaagatgagacgaaagttcttgctattgttgagaagccttgtgaaccagcagaagagaaaagtaaggagggttcagtggatcgagatgctgtgcttgcaagagttgcaactgagaaaagaatatcacttatcaatgcatgggaagaaagtgaaaaatcaaaagtagagaacaaagctcataaaaaattatccgttgttgggtcatgggagaacaccaagaaggcagatgtggaggctgagctaaaaaagattgaggaaaaattggagaagaagaaggcagagtatgtggagcagatgaaaaacaagatagctttgatccacaaggctgcagaggaaaagagggcactgattgaagctaagcgtgctgaagatcttctcaaggcagaggaaactgccgctaaataccgagccaccggaaaagctcctaagaagctccttggttttctttcatgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C Remorin_N

Protein Analysis

207

Amino Acids

23.09

Weight (kDa)

6.0

Isoelectric Point (pI)

54.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48940
fragaria_vesca FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica Prupe.2G293900_v2.0.a1
pyrus_communis pycom01g21040 pycom07g24580
rosa_chinensis RchiOBHm_Chr1g0377211
rosa_laevigata RLG00000026536
rosa_multiflora Rmu_ssc0000155.1_g000010
rosa_roxburghii Rroxscaffold_4G00281380
rosa_rugosa Rorug01G0402100
rosa_samantha Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana Rw1G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 157
AciI CCGC 1 cut(s) 564
AclWI GGATC 2 cut(s) 255, 478
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 2 cut(s) 189, 555
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 2 cut(s) 33, 134
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 1 cut(s) 521
AluBI AGCT 8 cut(s) 68, 119, 344, 409, 479, 524, 590, 601
AluI AGCT 8 cut(s) 68, 119, 344, 409, 479, 524, 590, 601
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 255, 478
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 19
BglII AGATCT 1 cut(s) 538
BisI GCNGC 2 cut(s) 495, 564
BlpI GCTNAGC 2 cut(s) 405, 525
BlsI GCNGC 2 cut(s) 496, 565
BmiI GGNNCC 2 cut(s) 18, 159
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 48
Bpu1102I GCTNAGC 2 cut(s) 405, 525
BpuEI CTTGAG 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 75, 604
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 75, 604
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 270, 396
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 71, 104, 582
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 4 cut(s) 55, 247, 483, 538
Bsp1720I GCTNAGC 2 cut(s) 405, 525
BspACI CCGC 1 cut(s) 564
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 271, 397
BspLI GGNNCC 2 cut(s) 18, 159
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 2 cut(s) 255, 478
BspT107I GGYRCC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 75, 604
BssMI GATC 4 cut(s) 55, 247, 483, 538
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 604
Bst6I CTCTTC 3 cut(s) 90, 144, 216
BstACI GRCGYC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 264, 531
BstDEI CTNAG 4 cut(s) 279, 405, 525, 594
BstDSI CCRYGG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 4 cut(s) 58, 250, 486, 541
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 4 cut(s) 55, 247, 483, 538
BstMWI GCNNNNNNNGC 3 cut(s) 263, 272, 530
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 249, 512
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 264, 531
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 103
Csp6I GTAC 2 cut(s) 32, 133
CviAII CATG 3 cut(s) 306, 372, 618
CviQI GTAC 2 cut(s) 32, 133
DdeI CTNAG 4 cut(s) 279, 405, 525, 594
DinI GGCGCC 1 cut(s) 159
DpnI GATC 4 cut(s) 57, 249, 485, 540
DpnII GATC 4 cut(s) 55, 247, 483, 538
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 3 cut(s) 90, 144, 216
EarI CTCTTC 3 cut(s) 90, 144, 216
Eco130I CCWWGG 1 cut(s) 604
Eco57I CTGAAG 2 cut(s) 189, 555
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 307
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 309, 375, 621
FaiI YATR 5 cut(s) 307, 348, 373, 453, 619
FatI CATG 3 cut(s) 305, 371, 617
Fnu4HI GCNGC 2 cut(s) 495, 564
Fsp4HI GCNGC 2 cut(s) 495, 564
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 495, 564
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 74
HapII CCGG 3 cut(s) 71, 104, 582
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 3 cut(s) 309, 375, 621
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 38
HpaII CCGG 3 cut(s) 71, 104, 582
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 5 cut(s) 43, 55, 94, 123, 148
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 3 cut(s) 148, 382, 436
HpyCH4V TGCA 4 cut(s) 266, 275, 305, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 272, 530
HpyF3I CTNAG 4 cut(s) 279, 405, 525, 594
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 309, 375, 621
HspAI GCGC 1 cut(s) 158
KasI GGCGCC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 55, 247, 483, 538
LmnI GCTCC 5 cut(s) 73, 124, 457, 595, 606
LpnPI CCDG 7 cut(s) 14, 78, 84, 117, 180, 228, 595
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 35
MalI GATC 4 cut(s) 57, 249, 485, 540
MboI GATC 4 cut(s) 55, 247, 483, 538
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 2 cut(s) 353, 428
Mly113I GGCGCC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 540
MspI CCGG 3 cut(s) 71, 104, 582
MwoI GCNNNNNNNGC 3 cut(s) 263, 272, 530
NarI GGCGCC 1 cut(s) 158
NdeII GATC 4 cut(s) 55, 247, 483, 538
NlaIII CATG 3 cut(s) 309, 375, 621
NlaIV GGNNCC 2 cut(s) 18, 159
NsiI ATGCAT 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 496, 565
PluTI GGCGCC 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 18, 159
PsrI GAACNNNNNNTAC 2 cut(s) 223, 255
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 33, 134
RsaNI GTAC 2 cut(s) 32, 133
SatI GCNGC 2 cut(s) 495, 564
Sau3AI GATC 4 cut(s) 55, 247, 483, 538
SduI GDGCHC 1 cut(s) 514
SetI ASST 9 cut(s) 33, 70, 121, 346, 411, 481, 526, 592, 603
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 495
SfoI GGCGCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 2 cut(s) 353, 428
SsiI CCGC 1 cut(s) 564
SspDI GGCGCC 1 cut(s) 157
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 604
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 353, 428
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 2 cut(s) 249, 519
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 2 cut(s) 479, 606
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 2 cut(s) 249, 519
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.