Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011763

Physical Location & Seq

Genomic Coordinates Reverse (-)

28594515 .. 28596280

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G293900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCAGAGACAGAGGAACCCAAGAAGTTAGAATTCGAATCACTCTCGGATCTTCCACCCGCTCCCGCTCCCGCTCCGGCCCCGGCAGAGGAAGAGAAGCCGGTTGTGGAAGCTCCAAAAGATCCTCAGCCAACTAAGGACAAATCTGAAACTCCACCACCCCCTGCCCCTGAACACAAAGCTGAGGCTGATCACTCCAAAGTTCTTGCTATTGTTGAGAAGCCTTCTGAACCTGCTGCCGAAGAGAAAAGTAAGGAGGGTTCAGTCAATCGAGATGCTGTGCTTGCAAGAGTTGCAACAGAGAAAAGGCTGTCACTTATCAGAGCATGGGAAGAAAGTGAAAAATCAAAGGCAGAGAATAAAGCTCATAAGAAGCTATCTGCCGTTGGTTCATGGGAGAACACCAAGAAGGCAACTGTGGAGGCTGAGCTGAAAAAGATTGAGGAAAAATTGGAGAAGAAGAAGGCAGAGTATGTGGAACAGATGAAAAACAAGATAGCTTTAATCCACAAGGCTGCAGAAGAAAAGAGGGCAGCGATCGAAGCTAAACGCGGGGAGGATCTTCTTAAGGCGGAGGAAACAGCTGCAAAATACCGTGCCACAGGAAATGCTCCTAAGAAACTCCTTGGTTGTTTTTCAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0030246 GO:0031406 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0044464 GO:0048029 GO:0048032 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

215

Amino Acids

23.45

Weight (kDa)

6.5

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48940
fragaria_vesca	FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica	MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica	Prupe.2G293900_v2.0.a1
pyrus_communis	pycom01g21040 pycom07g24580
rosa_chinensis	RchiOBHm_Chr1g0377211
rosa_laevigata	RLG00000026536
rosa_multiflora	Rmu_ssc0000155.1_g000010
rosa_roxburghii	Rroxscaffold_4G00281380
rosa_rugosa	Rorug01G0402100
rosa_samantha	Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana	Rw1G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	241
AccBSI	CCGCTC	3 cut(s)	62, 68, 74
AccII	CGCG	1 cut(s)	552
AciI	CCGC	5 cut(s)	60, 66, 72, 552, 572
AclWI	GGATC	3 cut(s)	57, 116, 567
AcsI	RAATTY	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflII	CTTAAG	1 cut(s)	566
AluBI	AGCT	8 cut(s)	113, 182, 365, 376, 430, 500, 545, 584
AluI	AGCT	8 cut(s)	113, 182, 365, 376, 430, 500, 545, 584
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	3 cut(s)	57, 116, 567
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	4 cut(s)	236, 515, 533, 584
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	83
AsuII	TTCGAA	1 cut(s)	36
BbvCI	CCTCAGC	2 cut(s)	126, 183
BbvI	GCAGC	4 cut(s)	223, 502, 545, 571
BceAI	ACGGC	1 cut(s)	368
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	2
BfmI	CTRYAG	1 cut(s)	516
BfrI	CTTAAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	241
BisI	GCNGC	4 cut(s)	237, 516, 534, 585
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	238, 517, 535, 586
Bme1390I	CCNGG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	18, 81
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	265
Bpu10I	CCTNAGC	2 cut(s)	126, 183
Bpu1102I	GCTNAGC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	81, 625
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	81, 625
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	3 cut(s)	140, 174, 417
BseXI	GCAGC	4 cut(s)	223, 502, 545, 571
Bsh1236I	CGCG	1 cut(s)	552
Bsh1285I	CGRYCG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	80
BsiEI	CGRYCG	1 cut(s)	540
BsiSI	CCGG	3 cut(s)	77, 83, 101
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	2
BsnI	GGCC	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	36
Bsp143I	GATC	5 cut(s)	49, 121, 190, 537, 559
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	5 cut(s)	60, 66, 72, 552, 572
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	3 cut(s)	139, 175, 418
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	18, 81
BspMAI	CTGCAG	1 cut(s)	520
BspMI	ACCTGC	1 cut(s)	241
BspPI	GGATC	3 cut(s)	57, 116, 567
BspT104I	TTCGAA	1 cut(s)	36
BspTI	CTTAAG	1 cut(s)	566
BsrBI	CCGCTC	3 cut(s)	62, 68, 74
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	81, 625
BssMI	GATC	5 cut(s)	49, 121, 190, 537, 559
BssT1I	CCWWGG	1 cut(s)	625
Bst4CI	ACNGT	2 cut(s)	418, 596
Bst6I	CTCTTC	2 cut(s)	87, 237
BstAFI	CTTAAG	1 cut(s)	566
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	5 cut(s)	126, 135, 183, 426, 615
BstFNI	CGCG	1 cut(s)	552
BstKTI	GATC	5 cut(s)	52, 124, 193, 540, 562
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	5 cut(s)	49, 121, 190, 537, 559
BstMCI	CGRYCG	1 cut(s)	540
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 293, 542
BstSCI	CCNGG	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	4 cut(s)	223, 502, 545, 571
BstX2I	RGATCY	3 cut(s)	49, 121, 559
BstYI	RGATCY	3 cut(s)	49, 121, 559
BsuRI	GGCC	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	2 cut(s)	327, 393
DdeI	CTNAG	5 cut(s)	126, 135, 183, 426, 615
DpnI	GATC	5 cut(s)	51, 123, 192, 539, 561
DpnII	GATC	5 cut(s)	49, 121, 190, 537, 559
Eam1104I	CTCTTC	2 cut(s)	87, 237
EarI	CTCTTC	2 cut(s)	87, 237
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	625
FaeI	CATG	2 cut(s)	330, 396
FaiI	YATR	4 cut(s)	328, 369, 394, 474
FatI	CATG	2 cut(s)	326, 392
FauI	CCCGC	4 cut(s)	67, 73, 79, 545
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	4 cut(s)	237, 516, 534, 585
Fsp4HI	GCNGC	4 cut(s)	237, 516, 534, 585
GluI	GCNGC	4 cut(s)	237, 516, 534, 585
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	3 cut(s)	77, 83, 101
Hin1II	CATG	2 cut(s)	330, 396
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	3 cut(s)	77, 83, 101
Hpy188I	TCNGA	4 cut(s)	49, 148, 229, 323
Hpy188III	TCNNGA	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	234, 403, 457
HpyCH4III	ACNGT	2 cut(s)	418, 596
HpyCH4V	TGCA	4 cut(s)	287, 296, 518, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 293, 542
HpyF3I	CTNAG	5 cut(s)	126, 135, 183, 426, 615
Hsp92II	CATG	2 cut(s)	330, 396
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	49, 121, 190, 537, 559
LmnI	GCTCC	5 cut(s)	67, 73, 79, 118, 616
LpnPI	CCDG	8 cut(s)	90, 96, 114, 177, 183, 246, 588, 624
Lsp1109I	GCAGC	4 cut(s)	223, 502, 545, 571
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	5 cut(s)	51, 123, 192, 539, 561
MbiI	CCGCTC	3 cut(s)	62, 68, 74
MboI	GATC	5 cut(s)	49, 121, 190, 537, 559
MboII	GAAGA	8 cut(s)	44, 104, 254, 344, 469, 472, 533, 554
MflI	RGATCY	3 cut(s)	49, 121, 559
MluCI	AATT	2 cut(s)	32, 449
MseI	TTAA	2 cut(s)	503, 567
MspA1I	CMGCKG	1 cut(s)	584
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	3 cut(s)	77, 83, 101
MspR9I	CCNGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	3 cut(s)	284, 293, 542
NciI	CCSGG	1 cut(s)	83
NdeII	GATC	5 cut(s)	49, 121, 190, 537, 559
NlaIII	CATG	2 cut(s)	330, 396
NlaIV	GGNNCC	2 cut(s)	18, 81
NmuCI	GTSAC	1 cut(s)	312
NspV	TTCGAA	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	4 cut(s)	238, 517, 535, 586
Ple19I	CGATCG	1 cut(s)	540
PspN4I	GGNNCC	2 cut(s)	18, 81
PspPI	GGNCC	1 cut(s)	79
PsrI	GAACNNNNNNTAC	2 cut(s)	244, 276
PstI	CTGCAG	1 cut(s)	520
PsuI	RGATCY	3 cut(s)	49, 121, 559
PvuI	CGATCG	1 cut(s)	540
PvuII	CAGCTG	1 cut(s)	584
SaqAI	TTAA	2 cut(s)	503, 567
SatI	GCNGC	4 cut(s)	237, 516, 534, 585
Sau3AI	GATC	5 cut(s)	49, 121, 190, 537, 559
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	9 cut(s)	115, 184, 235, 367, 378, 432, 502, 547, 586
SfaNI	GCATC	1 cut(s)	265
SfcI	CTRYAG	1 cut(s)	516
SfuI	TTCGAA	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	2 cut(s)	32, 449
SsiI	CCGC	5 cut(s)	60, 66, 72, 552, 572
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	625
TaaI	ACNGT	2 cut(s)	418, 596
TaqI	TCGA	3 cut(s)	36, 271, 540
TasI	AATT	2 cut(s)	32, 449
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	503, 567
Tru9I	TTAA	2 cut(s)	503, 567
TseFI	GTSAC	1 cut(s)	312
TseI	GCWGC	4 cut(s)	236, 515, 533, 584
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	381, 500
Vha464I	CTTAAG	1 cut(s)	566
XapI	RAATTY	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.