pycom07g24580

Remorin, N-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011763
Physical Location & Seq
Reverse (-)
25235271 .. 25237466
2196 bp
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UTR
Exon/CDS
Intron
pycom07g24580.5

Sequence Viewer

Length: 645 bp
ATGGCAGAGGCGGAGGAACCCAAGAAGCTAGAATCCGAGTCACCCTCGGATCCTCCACCCGCTCCGACTACGGCTCCGGCGGAGAAAGAGAAGCCGCTTGTGGAAGCTCCAAAAGACCCTGTGTCCCACAAGGACAAATCTGAAATTCCACCACCTCCTCCTCCTCCTGAAAGCAAGGCTGAGCCTGATGAGTCCAAGGCCCTTGCTATTGTTGTTGACAAGCCTTCGGAACCTATTGTCGAAGAGAAAAGTAAGGAGGGTTCCGTCAATCGCGATGCTGTGCTAGCAAAAGTTGCAACAGAGAAAAGGCTGTCACTTATCAGAGCATGGGAAGAAAGTGAGAGATCAAAGGCAGAGAATAAAGCTCAGAAGAAATTATCTGCCATCGGTTCATGGGAAAACACCAGGAAGGCAATTGTGGAGGCTGAGCTGAAAAAGATTGAGGAAAAATTGGAGAAGCAAAAGGCCGAGTACGTGGAACAGATGAAGAACAAGATTGCTTTAATCCACAAGGCTGCAGAAGAAAAGAGGGCGGTGGTTGAAGCTAAGTGCGGGGAAGATCTTCTCAAGGCGGAGGAAACTGCTGCTAAATACCGTGCCAAAGGGAAAACTCCTAAGAAGCTCCTCGGTTGCTTTTCAAGCTAA

Protein Analysis

215

Amino Acids

23.55

Weight (kDa)

6.81

Isoelectric Point (pI)

55.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48940
fragaria_vesca FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica Prupe.2G293900_v2.0.a1
pyrus_communis pycom01g21040 pycom07g24580
rosa_chinensis RchiOBHm_Chr1g0377211
rosa_laevigata RLG00000026536
rosa_multiflora Rmu_ssc0000155.1_g000010
rosa_roxburghii Rroxscaffold_4G00281380
rosa_rugosa Rorug01G0402100
rosa_samantha Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana Rw1G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 62
AccII CGCG 1 cut(s) 273
AciI CCGC 7 cut(s) 11, 60, 80, 95, 533, 552, 572
AclWI GGATC 2 cut(s) 44, 57
AcsI RAATTY 1 cut(s) 144
AfaI GTAC 1 cut(s) 473
AgsI TTSAA 2 cut(s) 542, 639
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 7 cut(s) 28, 107, 365, 430, 545, 622, 642
AluI AGCT 7 cut(s) 28, 107, 365, 430, 545, 622, 642
AlwI GGATC 2 cut(s) 44, 57
AoxI GGCC 2 cut(s) 198, 465
ApeKI GCWGC 2 cut(s) 515, 584
ApoI RAATTY 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 561
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 33
AsuNHI GCTAGC 1 cut(s) 283
BamHI GGATCC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 502, 571
BccI CCATC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 406
BfaI CTAG 2 cut(s) 29, 284
BfmI CTRYAG 1 cut(s) 516
BglII AGATCT 1 cut(s) 559
BisI GCNGC 3 cut(s) 95, 516, 585
BlpI GCTNAGC 2 cut(s) 180, 426
BlsI GCNGC 3 cut(s) 96, 517, 586
Bme1390I CCNGG 1 cut(s) 406
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 5 cut(s) 18, 51, 75, 231, 262
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 1 cut(s) 265
BmtI GCTAGC 1 cut(s) 287
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu1102I GCTNAGC 2 cut(s) 180, 426
BpuEI CTTGAG 1 cut(s) 551
BsaAI YACGTR 1 cut(s) 475
BsaJI CCNNGG 3 cut(s) 45, 195, 625
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 3 cut(s) 45, 195, 625
BseMII CTCAG 3 cut(s) 171, 380, 417
BseRI GAGGAG 4 cut(s) 147, 150, 153, 614
BseXI GCAGC 2 cut(s) 502, 571
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 2 cut(s) 200, 467
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 2 cut(s) 200, 467
Bsp143I GATC 3 cut(s) 49, 344, 559
Bsp1720I GCTNAGC 2 cut(s) 180, 426
Bsp68I TCGCGA 1 cut(s) 273
BspACI CCGC 7 cut(s) 11, 60, 80, 95, 533, 552, 572
BspANI GGCC 2 cut(s) 200, 467
BspCNI CTCAG 3 cut(s) 172, 379, 418
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 18, 51, 75, 231, 262
BspMAI CTGCAG 1 cut(s) 520
BspOI GCTAGC 1 cut(s) 287
BspPI GGATC 2 cut(s) 44, 57
BsrBI CCGCTC 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 45, 195, 625
BssMI GATC 3 cut(s) 49, 344, 559
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 5 cut(s) 180, 366, 426, 546, 615
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 3 cut(s) 52, 347, 562
BstMBI GATC 3 cut(s) 49, 344, 559
BstMWI GCNNNNNNNGC 3 cut(s) 284, 293, 639
BstNI CCWGG 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 404
BstSFI CTRYAG 1 cut(s) 516
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 502, 571
BstX2I RGATCY 2 cut(s) 49, 559
BstYI RGATCY 2 cut(s) 49, 559
BsuRI GGCC 2 cut(s) 200, 467
BtgZI GCGATG 1 cut(s) 288
BtuMI TCGCGA 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 472
CviAII CATG 2 cut(s) 327, 393
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 5 cut(s) 180, 366, 426, 546, 615
DpnI GATC 3 cut(s) 51, 346, 561
DpnII GATC 3 cut(s) 49, 344, 559
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 237
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 3 cut(s) 26, 95, 587
Eco130I CCWWGG 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 330, 396
FaiI YATR 2 cut(s) 328, 394
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 326, 392
FauI CCCGC 2 cut(s) 67, 545
Fnu4HI GCNGC 3 cut(s) 95, 516, 585
Fsp4HI GCNGC 3 cut(s) 95, 516, 585
FspBI CTAG 2 cut(s) 29, 284
GluI GCNGC 3 cut(s) 95, 516, 585
HaeIII GGCC 2 cut(s) 200, 467
HapII CCGG 1 cut(s) 77
Hin1II CATG 2 cut(s) 330, 396
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 3 cut(s) 32, 38, 191
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 7 cut(s) 37, 49, 66, 142, 229, 323, 369
Hpy188III TCNNGA 2 cut(s) 167, 272
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 2 cut(s) 234, 403
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 2 cut(s) 296, 518
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 293, 639
HpyF3I CTNAG 5 cut(s) 180, 366, 426, 546, 615
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 2 cut(s) 330, 396
Kzo9I GATC 3 cut(s) 49, 344, 559
LmnI GCTCC 4 cut(s) 67, 79, 112, 627
LpnPI CCDG 6 cut(s) 90, 132, 180, 198, 391, 418
Lsp1109I GCAGC 2 cut(s) 502, 571
LweI GCATC 1 cut(s) 265
MaeI CTAG 2 cut(s) 29, 284
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 39, 312
MalI GATC 3 cut(s) 51, 346, 561
MbiI CCGCTC 1 cut(s) 62
MboI GATC 3 cut(s) 49, 344, 559
MboII GAAGA 7 cut(s) 254, 344, 382, 499, 533, 554, 569
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 2 cut(s) 49, 559
MluCI AATT 4 cut(s) 144, 374, 414, 449
MlyI GAGTC 2 cut(s) 47, 200
MmeI TCCRAC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 1 cut(s) 503
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 284, 293, 639
NdeII GATC 3 cut(s) 49, 344, 559
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 2 cut(s) 330, 396
NlaIV GGNNCC 5 cut(s) 18, 51, 75, 231, 262
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 39, 312
NruI TCGCGA 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 3 cut(s) 96, 517, 586
PleI GAGTC 2 cut(s) 46, 199
PpsI GAGTC 2 cut(s) 46, 199
Ppu21I YACGTR 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 404
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 5 cut(s) 18, 51, 75, 231, 262
PspPI GGNCC 1 cut(s) 199
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PstI CTGCAG 1 cut(s) 520
PsuI RGATCY 2 cut(s) 49, 559
RruI TCGCGA 1 cut(s) 273
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 3 cut(s) 95, 516, 585
Sau3AI GATC 3 cut(s) 49, 344, 559
Sau96I GGNCC 1 cut(s) 199
SchI GAGTC 2 cut(s) 47, 200
ScrFI CCNGG 1 cut(s) 406
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 4 cut(s) 144, 374, 414, 449
SsiI CCGC 7 cut(s) 11, 60, 80, 95, 533, 552, 572
SspMI CTAG 2 cut(s) 29, 284
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 240
TasI AATT 4 cut(s) 144, 374, 414, 449
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TseFI GTSAC 2 cut(s) 39, 312
TseI GCWGC 2 cut(s) 515, 584
Tsp45I GTSAC 2 cut(s) 39, 312
TspDTI ATGAA 2 cut(s) 381, 500
TspGWI ACGGA 1 cut(s) 253
XapI RAATTY 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 2 cut(s) 29, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.