MD01G1200400.v1.1

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0011763
Physical Location & Seq
Reverse (-)
29716471 .. 29718952
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1200400.v1.1.491

Sequence Viewer

Length: 636 bp
ATGACAGAGGCAGAGGAACCCAAGAAGCTAGAACCCGAGTCACCCTCAGATCCTCCACCTGCTCCGACTCCGGCTCCGGTGGAGGAAGAGAAGCCGGTTGTGGAAGCTCCAAAAGATCCTGAGTCCCACAAGGACAAATCTGAAATTCTACCACCACCTCCTGAAAACAAGGCTGAGCCTGATGAGTCCAAAGCTCTTGCTATTGTTGAGAAGCCTTCTGAACCTGCTGCAGAAGAGAAAAGCAAGGAGGATTCCGTCGATCGGGATGCTGTGCTAGCAAGAGTTGCAACAGAAAAAAAGCTGTCACTTATCAGAGCATGGGAAGAAAGTGAAAAATCAAAGGCAGAGAATAAAGCTCACAAGAAACTATCTGCCATCGGTTCATGGGAAAACACCAAGAAGGCAACTGTGGAGGCTGAGCTGAAAAAGATCGAGGAACAATTGGAGAAGAAGAAGGCCGAGTATGTGGAACAGATGAAGAACAAGATAGCTTTAATCCACAAGGCTGCGGAAGAAAAGAGGGCGGTGATTGAAGCTAAGCGCGGGGAAGATCTTCTCAAGGCGGAGGAAACTGCTGCGAAGTACCGTGCCACGGGGTATGCTCCTAAGAAGCTCCTTGGTTGCTTTCCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C Remorin_N

Protein Analysis

212

Amino Acids

23.35

Weight (kDa)

5.46

Isoelectric Point (pI)

67.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_N PF03766 44 - 95 6.3e-15 Remorin, N-terminal region
Remorin_C PF03763 99 - 204 4.7e-35 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48940
fragaria_vesca FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica Prupe.2G293900_v2.0.a1
pyrus_communis pycom01g21040 pycom07g24580
rosa_chinensis RchiOBHm_Chr1g0377211
rosa_laevigata RLG00000026536
rosa_multiflora Rmu_ssc0000155.1_g000010
rosa_roxburghii Rroxscaffold_4G00281380
rosa_rugosa Rorug01G0402100
rosa_samantha Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana Rw1G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 67
Acc36I ACCTGC 2 cut(s) 67, 232
AccII CGCG 1 cut(s) 543
AciI CCGC 4 cut(s) 509, 524, 543, 563
AclWI GGATC 2 cut(s) 44, 110
AcsI RAATTY 1 cut(s) 144
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 2 cut(s) 261, 592
AgsI TTSAA 1 cut(s) 533
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 9 cut(s) 28, 107, 194, 301, 356, 421, 491, 536, 613
AluI AGCT 9 cut(s) 28, 107, 194, 301, 356, 421, 491, 536, 613
AlwI GGATC 2 cut(s) 44, 110
Ama87I CYCGRG 1 cut(s) 35
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 227, 506, 575
ApoI RAATTY 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 552
AspLEI GCGC 1 cut(s) 543
AsuHPI GGTGA 2 cut(s) 33, 538
AsuNHI GCTAGC 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 35
BbvI GCAGC 3 cut(s) 214, 493, 562
BccI CCATC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BciT130I CCWGG 1 cut(s) 630
BfaI CTAG 2 cut(s) 29, 275
BfmI CTRYAG 1 cut(s) 228
BfuAI ACCTGC 2 cut(s) 67, 232
BglII AGATCT 1 cut(s) 550
BisI GCNGC 3 cut(s) 228, 507, 576
BlpI GCTNAGC 3 cut(s) 174, 417, 537
BlsI GCNGC 3 cut(s) 229, 508, 577
Bme1390I CCNGG 1 cut(s) 630
BmeT110I CYCGRG 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 18, 75
BmrFI CCNGG 1 cut(s) 630
BmsI GCATC 1 cut(s) 256
BmtI GCTAGC 1 cut(s) 278
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu1102I GCTNAGC 3 cut(s) 174, 417, 537
BpuEI CTTGAG 1 cut(s) 542
BsaJI CCNNGG 2 cut(s) 591, 616
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 592
Bse118I RCCGGY 1 cut(s) 94
BseBI CCWGG 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 591, 616
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 2 cut(s) 261, 592
BseMII CTCAG 4 cut(s) 60, 111, 165, 408
BseXI GCAGC 3 cut(s) 214, 493, 562
Bsh1236I CGCG 1 cut(s) 543
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 1 cut(s) 458
BsiEI CGRYCG 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 71, 77, 95
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 261, 592
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 35
Bsp143I GATC 5 cut(s) 49, 115, 259, 429, 550
Bsp1720I GCTNAGC 3 cut(s) 174, 417, 537
BspACI CCGC 4 cut(s) 509, 524, 543, 563
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 4 cut(s) 59, 112, 166, 409
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 18, 75
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 2 cut(s) 67, 232
BspOI GCTAGC 1 cut(s) 278
BspPI GGATC 2 cut(s) 44, 110
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 591, 616
BssMI GATC 5 cut(s) 49, 115, 259, 429, 550
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 2 cut(s) 409, 587
Bst6I CTCTTC 2 cut(s) 81, 228
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 6 cut(s) 46, 120, 174, 417, 537, 606
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 543
BstHHI GCGC 1 cut(s) 543
BstKTI GATC 5 cut(s) 52, 118, 262, 432, 553
BstMBI GATC 5 cut(s) 49, 115, 259, 429, 550
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 2 cut(s) 275, 284
BstNI CCWGG 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 3 cut(s) 214, 493, 562
BstX2I RGATCY 3 cut(s) 49, 115, 550
BstYI RGATCY 3 cut(s) 49, 115, 550
BsuRI GGCC 1 cut(s) 458
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 271
BveI ACCTGC 2 cut(s) 67, 232
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 94
Csp6I GTAC 1 cut(s) 583
CviAII CATG 2 cut(s) 318, 384
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 6 cut(s) 46, 120, 174, 417, 537, 606
DpnI GATC 5 cut(s) 51, 117, 261, 431, 552
DpnII GATC 5 cut(s) 49, 115, 259, 429, 550
Eam1104I CTCTTC 2 cut(s) 81, 228
EarI CTCTTC 2 cut(s) 81, 228
EciI GGCGGA 1 cut(s) 578
Eco130I CCWWGG 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 2 cut(s) 321, 387
FaiI YATR 4 cut(s) 319, 385, 465, 600
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 317, 383
FauI CCCGC 1 cut(s) 536
Fnu4HI GCNGC 3 cut(s) 228, 507, 576
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 228, 507, 576
FspBI CTAG 2 cut(s) 29, 275
GlaI GCGC 1 cut(s) 542
GluI GCNGC 3 cut(s) 228, 507, 576
HaeIII GGCC 1 cut(s) 458
HapII CCGG 3 cut(s) 71, 77, 95
HhaI GCGC 1 cut(s) 543
Hin1II CATG 2 cut(s) 321, 387
Hin6I GCGC 1 cut(s) 541
HinP1I GCGC 1 cut(s) 541
HinfI GANTC 5 cut(s) 38, 67, 122, 185, 251
HpaII CCGG 3 cut(s) 71, 77, 95
HphI GGTGA 2 cut(s) 33, 538
Hpy188I TCNGA 5 cut(s) 49, 66, 142, 220, 314
Hpy188III TCNNGA 3 cut(s) 119, 161, 263
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 3 cut(s) 225, 394, 448
HpyCH4III ACNGT 2 cut(s) 409, 587
HpyCH4V TGCA 2 cut(s) 230, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 284
HpyF3I CTNAG 6 cut(s) 46, 120, 174, 417, 537, 606
Hsp92II CATG 2 cut(s) 321, 387
HspAI GCGC 1 cut(s) 541
Kzo9I GATC 5 cut(s) 49, 115, 259, 429, 550
LmnI GCTCC 5 cut(s) 67, 79, 112, 607, 618
LpnPI CCDG 9 cut(s) 72, 84, 90, 108, 132, 174, 192, 237, 615
Lsp1109I GCAGC 3 cut(s) 214, 493, 562
LweI GCATC 1 cut(s) 256
MaeI CTAG 2 cut(s) 29, 275
MaeIII GTNAC 2 cut(s) 39, 303
MalI GATC 5 cut(s) 51, 117, 261, 431, 552
MboI GATC 5 cut(s) 49, 115, 259, 429, 550
MboII GAAGA 9 cut(s) 98, 245, 335, 460, 463, 490, 524, 545, 560
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 3 cut(s) 49, 115, 550
MluCI AATT 2 cut(s) 144, 440
MlyI GAGTC 4 cut(s) 47, 61, 131, 194
MmeI TCCRAC 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 552
MseI TTAA 1 cut(s) 494
MspI CCGG 3 cut(s) 71, 77, 95
MspR9I CCNGG 1 cut(s) 630
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 630
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 275, 284
NdeII GATC 5 cut(s) 49, 115, 259, 429, 550
NheI GCTAGC 1 cut(s) 274
NlaIII CATG 2 cut(s) 321, 387
NlaIV GGNNCC 2 cut(s) 18, 75
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 39, 303
PaqCI CACCTGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 1 cut(s) 251
PkrI GCNGC 3 cut(s) 229, 508, 577
Ple19I CGATCG 1 cut(s) 262
PleI GAGTC 4 cut(s) 46, 61, 130, 193
PpsI GAGTC 4 cut(s) 46, 61, 130, 193
Psp6I CCWGG 1 cut(s) 628
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 2 cut(s) 18, 75
PstI CTGCAG 1 cut(s) 232
PsuI RGATCY 3 cut(s) 49, 115, 550
PvuI CGATCG 1 cut(s) 262
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 3 cut(s) 228, 507, 576
Sau3AI GATC 5 cut(s) 49, 115, 259, 429, 550
SchI GAGTC 4 cut(s) 47, 61, 131, 194
ScrFI CCNGG 1 cut(s) 630
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 557
SmoI CTYRAG 1 cut(s) 557
Sse9I AATT 2 cut(s) 144, 440
SsiI CCGC 4 cut(s) 509, 524, 543, 563
SspMI CTAG 2 cut(s) 29, 275
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 409, 587
TaqI TCGA 2 cut(s) 258, 432
TasI AATT 2 cut(s) 144, 440
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TseFI GTSAC 2 cut(s) 39, 303
TseI GCWGC 3 cut(s) 227, 506, 575
Tsp45I GTSAC 2 cut(s) 39, 303
TspDTI ATGAA 2 cut(s) 372, 491
TspGWI ACGGA 1 cut(s) 244
XapI RAATTY 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 2 cut(s) 29, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.