Rorug01G0402100

Remorin-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
50984495 .. 50985096
602 bp
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UTR
Exon/CDS
Intron
Rorug01G0402100.1

Sequence Viewer

Length: 240 bp
ATGCAAAAGTTGCTTGAAGCAAAAGTCTTGAATCAAAATAAATTGAAAGTCTATGATGATGGAGATGATGTGCTGCTTCAAGATTTGGGAACTTGGGATCCATGTATATCTTCTAATGAAAAATGGTTCCTATTTGGCGCAGAAACAAACGAAGCAGTTGAGAAATACTGCTCTTCTGTAAGGACAAGAAGGCTTTTGACTCCAACCGTGTCTCAAACACTCCATTCGAGTTCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

8.95

Weight (kDa)

5.21

Isoelectric Point (pI)

29.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011763)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 92, 105
AgsI TTSAA 4 cut(s) 17, 31, 46, 80
AloI GAACNNNNNNTCC 2 cut(s) 82, 114
AluBI AGCT 1 cut(s) 237
AluI AGCT 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 2 cut(s) 92, 105
ApeKI GCWGC 1 cut(s) 73
AspLEI GCGC 1 cut(s) 140
BamHI GGATCC 1 cut(s) 97
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 2 cut(s) 234, 238
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 99, 128
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
BseXI GCAGC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 99, 128
BspPI GGATC 2 cut(s) 92, 105
BspQI GCTCTTC 1 cut(s) 178
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 10
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
CfoI GCGC 1 cut(s) 140
CviAII CATG 1 cut(s) 102
CviJI RGCY 2 cut(s) 193, 237
CviKI_1 RGCY 2 cut(s) 193, 237
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
FaeI CATG 1 cut(s) 105
FaiI YATR 3 cut(s) 54, 103, 107
FatI CATG 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 2 cut(s) 234, 238
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 2 cut(s) 31, 199
Hpy188III TCNNGA 2 cut(s) 28, 80
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 97
LguI GCTCTTC 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 60
MaeI CTAG 2 cut(s) 234, 238
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 102, 165
MflI RGATCY 1 cut(s) 97
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 2 cut(s) 99, 128
PciSI GCTCTTC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 99, 128
PsuI RGATCY 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 178
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 193
SetI ASST 1 cut(s) 239
SgeI CNNG 7 cut(s) 26, 40, 92, 105, 114, 198, 220
Sse9I AATT 1 cut(s) 41
SspMI CTAG 2 cut(s) 234, 238
TaaI ACNGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 41
TfiI GAWTC 1 cut(s) 31
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 132
XspI CTAG 2 cut(s) 234, 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.