Rw1G036800

Remorin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011763
Physical Location & Seq
Reverse (-)
64612753 .. 64614886
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036800.1

Sequence Viewer

Length: 624 bp
ATGGCAGAGGCAGAGGAACCCAAGAAGCAGGTACTAGAATCCGAAAAACCCTCCGATCTTCCTCCAGCTCCGGCCACGGCTACAACATCATCAGAAGAGAAGCCGGTGGTTGTGGAAGCTCCGAAAGAGGAGTACAAAGAGAAATCAGAAGAGAAGGCGCCAAAGCCTGAAGATGAGACGAAAGTTCTTGCTATTGTTGAGAAGCCTTGTGAACCAGCAGAAGAGAAAAGTAAGGAGGGTTCAGTGGATCGAGATGCTGTGCTTGCAAAAGTTGCAACTGAGAAAAGAATATCACTTATCAATGCATGGGAAGAAAGTGAAAAATCAAAAGTAGAGAACAAAGCTCATAAAAAATTATCCGTTGTTGGGTCATGGGAGAACACCAAGAAGGCAGATGTGGAGGCTGAGCTAAAAAAGATTGAGGAAAAATTGGAGAAGAAGAAGGCAGAGTATGTGGAGCAGATGAAAAACAAGATAGCTTTGATCCACAAGGCTGCAGAGGAAAAGAGGGCACTGATTGAAGCTAAGCGTGCTGAAGATCTTCTCAAGGCAGAGGAAACTGCCGCTAAATACCGAGCCACCGGAAAAGCTCCTAAGAAGCTCCTTGGTTTTCTTTCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C Remorin_N

Protein Analysis

207

Amino Acids

23.06

Weight (kDa)

6.0

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_N PF03766 32 - 91 7e-10 Remorin, N-terminal region
Remorin_C PF03763 95 - 200 1.5e-34 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48940
fragaria_vesca FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica Prupe.2G293900_v2.0.a1
pyrus_communis pycom01g21040 pycom07g24580
rosa_chinensis RchiOBHm_Chr1g0377211
rosa_laevigata RLG00000026536
rosa_multiflora Rmu_ssc0000155.1_g000010
rosa_roxburghii Rroxscaffold_4G00281380
rosa_rugosa Rorug01G0402100
rosa_samantha Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana Rw1G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 157
AciI CCGC 1 cut(s) 564
AclWI GGATC 2 cut(s) 255, 478
AcoI YGGCCR 1 cut(s) 72
AcuI CTGAAG 2 cut(s) 189, 555
AcyI GRCGYC 1 cut(s) 158
AfaI GTAC 2 cut(s) 33, 134
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 1 cut(s) 521
AluBI AGCT 8 cut(s) 68, 119, 344, 409, 479, 524, 590, 601
AluI AGCT 8 cut(s) 68, 119, 344, 409, 479, 524, 590, 601
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 255, 478
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 494
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 481
BceAI ACGGC 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 19
BglII AGATCT 1 cut(s) 538
BisI GCNGC 2 cut(s) 495, 564
BlpI GCTNAGC 2 cut(s) 405, 525
BlsI GCNGC 2 cut(s) 496, 565
BmiI GGNNCC 2 cut(s) 18, 159
BmsI GCATC 1 cut(s) 244
BpmI CTGGAG 1 cut(s) 48
Bpu1102I GCTNAGC 2 cut(s) 405, 525
BpuEI CTTGAG 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 75, 604
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse118I RCCGGY 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 75, 604
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 270, 396
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 514
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 157
BsiSI CCGG 3 cut(s) 71, 104, 582
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 4 cut(s) 55, 247, 483, 538
Bsp1720I GCTNAGC 2 cut(s) 405, 525
BspACI CCGC 1 cut(s) 564
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 271, 397
BspLI GGNNCC 2 cut(s) 18, 159
BspMAI CTGCAG 1 cut(s) 499
BspMI ACCTGC 1 cut(s) 19
BspPI GGATC 2 cut(s) 255, 478
BspT107I GGYRCC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 75, 604
BssMI GATC 4 cut(s) 55, 247, 483, 538
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 604
Bst6I CTCTTC 3 cut(s) 90, 144, 216
BstACI GRCGYC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 264, 531
BstDEI CTNAG 4 cut(s) 279, 405, 525, 594
BstDSI CCRYGG 1 cut(s) 75
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 4 cut(s) 58, 250, 486, 541
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 4 cut(s) 55, 247, 483, 538
BstMWI GCNNNNNNNGC 3 cut(s) 263, 272, 530
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 249, 512
BveI ACCTGC 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 264, 531
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 103
Csp6I GTAC 2 cut(s) 32, 133
CviAII CATG 3 cut(s) 306, 372, 618
CviQI GTAC 2 cut(s) 32, 133
DdeI CTNAG 4 cut(s) 279, 405, 525, 594
DinI GGCGCC 1 cut(s) 159
DpnI GATC 4 cut(s) 57, 249, 485, 540
DpnII GATC 4 cut(s) 55, 247, 483, 538
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 3 cut(s) 90, 144, 216
EarI CTCTTC 3 cut(s) 90, 144, 216
Eco130I CCWWGG 1 cut(s) 604
Eco57I CTGAAG 2 cut(s) 189, 555
EcoT14I CCWWGG 1 cut(s) 604
EcoT22I ATGCAT 1 cut(s) 307
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 3 cut(s) 309, 375, 621
FaiI YATR 5 cut(s) 307, 348, 373, 453, 619
FatI CATG 3 cut(s) 305, 371, 617
Fnu4HI GCNGC 2 cut(s) 495, 564
Fsp4HI GCNGC 2 cut(s) 495, 564
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 495, 564
GsuI CTGGAG 1 cut(s) 48
HaeII RGCGCY 1 cut(s) 161
HaeIII GGCC 1 cut(s) 74
HapII CCGG 3 cut(s) 71, 104, 582
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 3 cut(s) 309, 375, 621
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HinfI GANTC 1 cut(s) 38
HpaII CCGG 3 cut(s) 71, 104, 582
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 5 cut(s) 43, 55, 94, 123, 148
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 3 cut(s) 148, 382, 436
HpyCH4V TGCA 4 cut(s) 266, 275, 305, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 272, 530
HpyF3I CTNAG 4 cut(s) 279, 405, 525, 594
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 3 cut(s) 309, 375, 621
HspAI GCGC 1 cut(s) 158
KasI GGCGCC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 55, 247, 483, 538
LmnI GCTCC 5 cut(s) 73, 124, 457, 595, 606
LpnPI CCDG 7 cut(s) 14, 78, 84, 117, 180, 228, 595
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 35
MalI GATC 4 cut(s) 57, 249, 485, 540
MboI GATC 4 cut(s) 55, 247, 483, 538
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 2 cut(s) 353, 428
Mly113I GGCGCC 1 cut(s) 158
Mph1103I ATGCAT 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 540
MspI CCGG 3 cut(s) 71, 104, 582
MwoI GCNNNNNNNGC 3 cut(s) 263, 272, 530
NarI GGCGCC 1 cut(s) 158
NdeII GATC 4 cut(s) 55, 247, 483, 538
NlaIII CATG 3 cut(s) 309, 375, 621
NlaIV GGNNCC 2 cut(s) 18, 159
NsiI ATGCAT 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 496, 565
PluTI GGCGCC 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 18, 159
PsrI GAACNNNNNNTAC 2 cut(s) 223, 255
PstI CTGCAG 1 cut(s) 499
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 33, 134
RsaNI GTAC 2 cut(s) 32, 133
SatI GCNGC 2 cut(s) 495, 564
Sau3AI GATC 4 cut(s) 55, 247, 483, 538
SduI GDGCHC 1 cut(s) 514
SetI ASST 9 cut(s) 33, 70, 121, 346, 411, 481, 526, 592, 603
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 495
SfoI GGCGCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 2 cut(s) 353, 428
SsiI CCGC 1 cut(s) 564
SspDI GGCGCC 1 cut(s) 157
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 604
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 353, 428
TatI WGTACW 1 cut(s) 132
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 2 cut(s) 249, 519
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 2 cut(s) 479, 606
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 2 cut(s) 249, 519
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.