Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011763

Physical Location & Seq

Genomic Coordinates Reverse (-)

33591153 .. 33593447

Gene Structure 2295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1268200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCAGAGGCAGAGGAACCCAAGAAGCTAGAATCTGAGTCACCCTCGGATCCTCCACCCGCTCCGATTACGGCTCCGGCGGAGAAAGAGAAGCCGCTTGTGGAAGCTCCAAAAGACCCTGTGTCCCACAAGGACAAATCTGAAATTCCACCACCTCCTCCTCCTGAAAGCAAGGCTGAGCTTGATGAGTCCAAAGCCCTTGCTACTGTTGTTGACAAGCCTTCGGAACCTATTGCCGAAGAGAAAAGTAAGGAGGGTTCCATCAATCGCGATGCTGTGCTAGCAAAAGTTGCAACAGAGAAAAGGCTGTCACTTATCAGAGCATGGGAAGAAAGTGAGAAATCAAGGGCACAGAATAAAGCTCAGAAGAAATTATCTGCCATCGGTTCATGGGAAAACACCAGGAAGGCAATTGTGGAGGCTGAGCTGAAAAAGATTGAGGAAAAATTGGAGAAGCAAAAGGCTGAGTACATGGAACAGATGAAGAACAAGATTGCTTTAATCCACAAGGCTGCAGAAGAAAAGAGGGCGGTGGTTGAAGCCAAGCGCGGGGAAGATCTTCTCAAGGCGGAGGAAGCTGCTGCAAAATACCGTGCCACAGGGAAAACTCCTAAGAAGCTCCTCGGTTGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0030246 GO:0031406 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0044464 GO:0048029 GO:0048032 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

212

Amino Acids

23.3

Weight (kDa)

7.7

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	44 - 97	1.7e-13	Remorin, N-terminal region
Remorin_C	PF03763	101 - 206	3.6e-34	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48940
fragaria_vesca	FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica	MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica	Prupe.2G293900_v2.0.a1
pyrus_communis	pycom01g21040 pycom07g24580
rosa_chinensis	RchiOBHm_Chr1g0377211
rosa_laevigata	RLG00000026536
rosa_multiflora	Rmu_ssc0000155.1_g000010
rosa_roxburghii	Rroxscaffold_4G00281380
rosa_rugosa	Rorug01G0402100
rosa_samantha	Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana	Rw1G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	2 cut(s)	270, 549
AciI	CCGC	6 cut(s)	60, 80, 95, 530, 549, 569
AclWI	GGATC	2 cut(s)	44, 57
AcsI	RAATTY	1 cut(s)	144
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	539
AhdI	GACNNNNNGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	401
AluBI	AGCT	7 cut(s)	28, 107, 181, 362, 427, 578, 619
AluI	AGCT	7 cut(s)	28, 107, 181, 362, 427, 578, 619
AlwI	GGATC	2 cut(s)	44, 57
ApeKI	GCWGC	3 cut(s)	512, 578, 581
ApoI	RAATTY	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	549
AsuHPI	GGTGA	1 cut(s)	33
AsuNHI	GCTAGC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	352
BamHI	GGATCC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	499, 565, 568
BccI	CCATC	2 cut(s)	269, 389
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	1 cut(s)	403
BfaI	CTAG	2 cut(s)	29, 281
BfmI	CTRYAG	1 cut(s)	513
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	4 cut(s)	95, 513, 579, 582
BlpI	GCTNAGC	2 cut(s)	177, 423
BlsI	GCNGC	4 cut(s)	96, 514, 580, 583
Bme1390I	CCNGG	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	121
BmiI	GGNNCC	5 cut(s)	18, 51, 75, 228, 259
BmrFI	CCNGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	262
BmtI	GCTAGC	1 cut(s)	284
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu1102I	GCTNAGC	2 cut(s)	177, 423
BpuEI	CTTGAG	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	45, 622
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
BseBI	CCWGG	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	45, 622
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	5 cut(s)	27, 168, 377, 414, 456
BseRI	GAGGAG	3 cut(s)	147, 150, 611
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	499, 565, 568
Bsh1236I	CGCG	2 cut(s)	270, 549
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	49, 556
Bsp1720I	GCTNAGC	2 cut(s)	177, 423
Bsp68I	TCGCGA	1 cut(s)	270
BspACI	CCGC	6 cut(s)	60, 80, 95, 530, 549, 569
BspCNI	CTCAG	5 cut(s)	28, 169, 376, 415, 457
BspFNI	CGCG	2 cut(s)	270, 549
BspLI	GGNNCC	5 cut(s)	18, 51, 75, 228, 259
BspMAI	CTGCAG	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	284
BspPI	GGATC	2 cut(s)	44, 57
BsrBI	CCGCTC	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	45, 622
BssMI	GATC	2 cut(s)	49, 556
Bst2UI	CCWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	208, 593
Bst6I	CTCTTC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	6 cut(s)	36, 177, 363, 423, 465, 612
BstFNI	CGCG	2 cut(s)	270, 549
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	2 cut(s)	52, 559
BstMBI	GATC	2 cut(s)	49, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 290, 575
BstNI	CCWGG	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	352
BstUI	CGCG	2 cut(s)	270, 549
BstV1I	GCAGC	3 cut(s)	499, 565, 568
BstX2I	RGATCY	2 cut(s)	49, 556
BstYI	RGATCY	2 cut(s)	49, 556
BtgZI	GCGATG	1 cut(s)	285
BtuMI	TCGCGA	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	282
CfoI	GCGC	1 cut(s)	549
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	3 cut(s)	324, 390, 472
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	6 cut(s)	36, 177, 363, 423, 465, 612
DpnI	GATC	2 cut(s)	51, 558
DpnII	GATC	2 cut(s)	49, 556
DriI	GACNNNNNGTC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	234
Eam1105I	GACNNNNNGTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	2 cut(s)	95, 584
EcoRII	CCWGG	1 cut(s)	401
FaeI	CATG	3 cut(s)	327, 393, 475
FaiI	YATR	3 cut(s)	325, 391, 473
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	3 cut(s)	323, 389, 471
FauI	CCCGC	2 cut(s)	67, 542
Fnu4HI	GCNGC	4 cut(s)	95, 513, 579, 582
Fsp4HI	GCNGC	4 cut(s)	95, 513, 579, 582
FspBI	CTAG	2 cut(s)	29, 281
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	4 cut(s)	95, 513, 579, 582
HapII	CCGG	1 cut(s)	77
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	3 cut(s)	327, 393, 475
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	32, 38, 188
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	7 cut(s)	37, 49, 66, 142, 226, 320, 366
Hpy188III	TCNNGA	2 cut(s)	164, 269
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	231, 400
HpyCH4III	ACNGT	2 cut(s)	208, 593
HpyCH4V	TGCA	3 cut(s)	293, 515, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 290, 575
HpyF3I	CTNAG	6 cut(s)	36, 177, 363, 423, 465, 612
Hsp92II	CATG	3 cut(s)	327, 393, 475
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	49, 556
LmnI	GCTCC	4 cut(s)	67, 79, 112, 624
LpnPI	CCDG	6 cut(s)	90, 132, 177, 388, 415, 585
Lsp1109I	GCAGC	3 cut(s)	499, 565, 568
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	2 cut(s)	29, 281
MaeIII	GTNAC	2 cut(s)	39, 309
MalI	GATC	2 cut(s)	51, 558
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	2 cut(s)	49, 556
MboII	GAAGA	7 cut(s)	251, 341, 379, 496, 530, 551, 566
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	2 cut(s)	49, 556
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	4 cut(s)	144, 371, 411, 446
MlyI	GAGTC	2 cut(s)	47, 197
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	2 cut(s)	500, 634
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	1 cut(s)	403
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	1 cut(s)	403
MvnI	CGCG	2 cut(s)	270, 549
MwoI	GCNNNNNNNGC	3 cut(s)	281, 290, 575
NdeII	GATC	2 cut(s)	49, 556
NheI	GCTAGC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	327, 393, 475
NlaIV	GGNNCC	5 cut(s)	18, 51, 75, 228, 259
NmuCI	GTSAC	2 cut(s)	39, 309
NruI	TCGCGA	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	96, 514, 580, 583
PleI	GAGTC	2 cut(s)	46, 196
PpsI	GAGTC	2 cut(s)	46, 196
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	5 cut(s)	18, 51, 75, 228, 259
PsrI	GAACNNNNNNTAC	2 cut(s)	241, 273
PstI	CTGCAG	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	49, 556
RruI	TCGCGA	1 cut(s)	270
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	500, 634
SatI	GCNGC	4 cut(s)	95, 513, 579, 582
Sau3AI	GATC	2 cut(s)	49, 556
SchI	GAGTC	2 cut(s)	47, 197
ScrFI	CCNGG	1 cut(s)	403
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	9 cut(s)	30, 109, 157, 183, 232, 364, 429, 580, 621
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	4 cut(s)	144, 371, 411, 446
SsiI	CCGC	6 cut(s)	60, 80, 95, 530, 549, 569
SspMI	CTAG	2 cut(s)	29, 281
StyD4I	CCNGG	1 cut(s)	401
TaaI	ACNGT	2 cut(s)	208, 593
TasI	AATT	4 cut(s)	144, 371, 411, 446
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	500, 634
Tru9I	TTAA	2 cut(s)	500, 634
TseFI	GTSAC	2 cut(s)	39, 309
TseI	GCWGC	3 cut(s)	512, 578, 581
Tsp45I	GTSAC	2 cut(s)	39, 309
TspDTI	ATGAA	2 cut(s)	378, 497
XapI	RAATTY	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	2 cut(s)	29, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.