FvH4_7g29430

Remorin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011763
Physical Location & Seq
Reverse (-)
21651372 .. 21653534
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29430.t2

Sequence Viewer

Length: 612 bp
ATGGCACAGTCAGAGGAGCCCAAGAAGCTAGAATCAGAAACACCCTCGGATCCTCCTCCAGCTCCGGCCACACCTGCAACATCATCAGAAGAGAAGCCGGCGGTTGAAGAAGCTCCGAAAGAGGAGTGTAAGGAGAAATCACAAGAGAAGGCGCCAGAGCCTGCAGATGAGTCGAAGGCTGTTGCTATTGTTGAGAAACCTTGTGAACCAGCAGAAGAGAAGAAGAGCAAGGAGGTTTCGGATCGAGATGCTGTGCTTGCAAGAGTTGAAACAGAGAAAAAGATATCACTAATCAATGCATGGGAAGAAAGTGAGAAATCGAAAGTAGAGAACAAAGCTCATAAGAAGTTATCTGTTGTTGGATCATGGGAGAACACCAAGAAGGCAAGTGTGGAGGCTGAGCTAAAAATAATTGAGGAAAAATTGGAGAAGAAGAAGGCAGAGGCTGTGGAGCAGATGAAGAACAAGATAGCTTTGATCCACAAGGCTGCAGAGGAAAAGAGGGCACTGATTGAAGCTAAGCGTGCCGAAGATCTTCTCAAGGCAGAGGAAAATGCTGCTAAATACCGAGCCACTGGAAAAGCTCCTAAAAAGCTCCTAAGTTTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C Remorin_N

Protein Analysis

204

Amino Acids

22.51

Weight (kDa)

5.78

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 87 - 192 3.6e-33 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48940
fragaria_vesca FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica Prupe.2G293900_v2.0.a1
pyrus_communis pycom01g21040 pycom07g24580
rosa_chinensis RchiOBHm_Chr1g0377211
rosa_laevigata RLG00000026536
rosa_multiflora Rmu_ssc0000155.1_g000010
rosa_roxburghii Rroxscaffold_4G00281380
rosa_rugosa Rorug01G0402100
rosa_samantha Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana Rw1G036800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 82
Acc36I ACCTGC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 151
AciI CCGC 1 cut(s) 101
AclWI GGATC 5 cut(s) 44, 57, 249, 370, 472
AcoI YGGCCR 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 152
AgsI TTSAA 3 cut(s) 107, 269, 515
AluBI AGCT 9 cut(s) 28, 62, 113, 338, 403, 473, 518, 584, 595
AluI AGCT 9 cut(s) 28, 62, 113, 338, 403, 473, 518, 584, 595
AlwI GGATC 5 cut(s) 44, 57, 249, 370, 472
AlwNI CAGNNNCTG 2 cut(s) 161, 446
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 488, 557
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 508
BamHI GGATCC 1 cut(s) 49
BanI GGYRCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 475, 544
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 162, 489
BfoI RGCGCY 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 82
BglII AGATCT 1 cut(s) 532
BisI GCNGC 2 cut(s) 489, 558
BlpI GCTNAGC 2 cut(s) 399, 519
BlsI GCNGC 2 cut(s) 490, 559
BmiI GGNNCC 3 cut(s) 18, 51, 153
BmsI GCATC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 42
Bpu1102I GCTNAGC 2 cut(s) 399, 519
BpuEI CTTGAG 1 cut(s) 524
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 45
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 580
BseRI GAGGAG 3 cut(s) 29, 45, 137
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 2 cut(s) 475, 544
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 65, 98
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 21, 508
Bsp143I GATC 5 cut(s) 49, 241, 362, 477, 532
Bsp1720I GCTNAGC 2 cut(s) 399, 519
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 391
BspLI GGNNCC 3 cut(s) 18, 51, 153
BspMAI CTGCAG 2 cut(s) 166, 493
BspMI ACCTGC 1 cut(s) 82
BspPI GGATC 5 cut(s) 44, 57, 249, 370, 472
BspQI GCTCTTC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 1 cut(s) 580
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 5 cut(s) 49, 241, 362, 477, 532
BssNI GRCGYC 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 9
Bst6I CTCTTC 3 cut(s) 84, 210, 218
BstACI GRCGYC 1 cut(s) 152
BstC8I GCNNGC 4 cut(s) 99, 162, 258, 525
BstDEI CTNAG 3 cut(s) 399, 519, 599
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 5 cut(s) 52, 244, 365, 480, 535
BstMBI GATC 5 cut(s) 49, 241, 362, 477, 532
BstMWI GCNNNNNNNGC 4 cut(s) 25, 74, 257, 524
BstSFI CTRYAG 2 cut(s) 162, 489
BstSLI GKGCMC 1 cut(s) 508
BstV1I GCAGC 2 cut(s) 475, 544
BstX2I RGATCY 2 cut(s) 49, 532
BstYI RGATCY 2 cut(s) 49, 532
BsuRI GGCC 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 506, 573
BveI ACCTGC 1 cut(s) 82
Cac8I GCNNGC 4 cut(s) 99, 162, 258, 525
CaiI CAGNNNCTG 2 cut(s) 161, 446
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 97
CviAII CATG 2 cut(s) 300, 366
DdeI CTNAG 3 cut(s) 399, 519, 599
DinI GGCGCC 1 cut(s) 153
DpnI GATC 5 cut(s) 51, 243, 364, 479, 534
DpnII GATC 5 cut(s) 49, 241, 362, 477, 532
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 3 cut(s) 84, 210, 218
EarI CTCTTC 3 cut(s) 84, 210, 218
Eco24I GRGCYC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 285
EcoRV GATATC 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 301
EcoT38I GRGCYC 1 cut(s) 21
EgeI GGCGCC 1 cut(s) 153
EheI GGCGCC 1 cut(s) 153
FaeI CATG 2 cut(s) 303, 369
FaiI YATR 3 cut(s) 301, 342, 367
FatI CATG 2 cut(s) 299, 365
Fnu4HI GCNGC 2 cut(s) 489, 558
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 489, 558
FspBI CTAG 1 cut(s) 29
GlaI GCGC 1 cut(s) 153
GluI GCNGC 2 cut(s) 489, 558
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 65, 98
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 2 cut(s) 303, 369
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 2 cut(s) 32, 170
HpaII CCGG 2 cut(s) 65, 98
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 7 cut(s) 13, 37, 49, 88, 117, 241, 611
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 4 cut(s) 142, 169, 376, 430
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4V TGCA 5 cut(s) 77, 164, 260, 299, 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 74, 257, 524
HpyF3I CTNAG 3 cut(s) 399, 519, 599
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 2 cut(s) 303, 369
HspAI GCGC 1 cut(s) 152
KasI GGCGCC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 97
KroNI GCCGGC 1 cut(s) 99
Kzo9I GATC 5 cut(s) 49, 241, 362, 477, 532
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 6 cut(s) 16, 67, 118, 451, 589, 600
LpnPI CCDG 8 cut(s) 72, 78, 87, 111, 168, 174, 222, 561
Lsp1109I GCAGC 2 cut(s) 475, 544
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 29
MalI GATC 5 cut(s) 51, 243, 364, 479, 534
MboI GATC 5 cut(s) 49, 241, 362, 477, 532
MflI RGATCY 2 cut(s) 49, 532
MhlI GDGCHC 2 cut(s) 21, 508
MluCI AATT 2 cut(s) 411, 422
Mly113I GGCGCC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 340
Mph1103I ATGCAT 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 534
MspI CCGG 2 cut(s) 65, 98
MwoI GCNNNNNNNGC 4 cut(s) 25, 74, 257, 524
NaeI GCCGGC 1 cut(s) 99
NarI GGCGCC 1 cut(s) 152
NdeII GATC 5 cut(s) 49, 241, 362, 477, 532
NgoMIV GCCGGC 1 cut(s) 97
NlaIII CATG 2 cut(s) 303, 369
NlaIV GGNNCC 3 cut(s) 18, 51, 153
NsiI ATGCAT 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 490, 559
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 178
PspN4I GGNNCC 3 cut(s) 18, 51, 153
PstI CTGCAG 2 cut(s) 166, 493
PstNI CAGNNNCTG 2 cut(s) 161, 446
PsuI RGATCY 2 cut(s) 49, 532
SapI GCTCTTC 1 cut(s) 218
SatI GCNGC 2 cut(s) 489, 558
Sau3AI GATC 5 cut(s) 49, 241, 362, 477, 532
SchI GAGTC 1 cut(s) 179
SduI GDGCHC 2 cut(s) 21, 508
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 2 cut(s) 162, 489
SfoI GGCGCC 1 cut(s) 153
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 2 cut(s) 411, 422
SsiI CCGC 1 cut(s) 101
SspDI GGCGCC 1 cut(s) 151
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 9
TaqI TCGA 3 cut(s) 173, 244, 320
TasI AATT 2 cut(s) 411, 422
TfiI GAWTC 1 cut(s) 32
TscAI CASTG 2 cut(s) 513, 580
TseI GCWGC 2 cut(s) 488, 557
TspDTI ATGAA 1 cut(s) 473
TspRI CASTG 2 cut(s) 513, 580
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.