Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009112

Physical Location & Seq

Genomic Coordinates Reverse (-)

18372404 .. 18373147

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGGAAAAGGAGGAGGTTATGTGACGGTGGCGGCGGAAGAAGTGGAGGAGTTACGGAGGAGGAACGGAGAGTTGGAGAGAGAAATGGAGGAGATGAAGAAAGAGATGGTTCAGCTGTGGCGGCGTACGGTGGTGGCGGAGGAGGCCGAGGAGAGACTCTGCTCGCAACTGGCGGAGCTAGAGGTCGAGTCTTTAGATCAGGCGCGTGACTATCACTCTCGTATAGTCTTTCTCATGGACCAAATCTCTCGTCTCTCTTCTTCCTCTCTTGAAGTCGTTGTTACGAATTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009987 GO:0009991 GO:0010438 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042742 GO:0043207 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:0080134 GO:0098542 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

11.18

Weight (kDa)

4.7

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSU	PF24980	13 - 65	2.7e-31	Response to Low Sulfur (LSU) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49570 AT3G49580 AT3G49580 AT3G49580 AT5G24655 AT5G24660
fragaria_vesca	FvH4_7g33340
malus_domestica	MD01G1231600.v1.1 MD07G1303600.v1.1
prunus_persica	Prupe.2G322300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383321
rosa_laevigata	RLG00000026113
rosa_multiflora	Rmu_co8146602.1_g000001 Rmu_sc0007173.1_g000016 Rmu_sc0007173.1_g000017 Rmu_sc0014196.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277400
rosa_samantha	Rh1AG466300 Rh1BG423600 Rh1CG436800 Rh1DG456300
rosa_wichuraiana	Rw1G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AciI	CCGC	5 cut(s)	32, 35, 121, 137, 173
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	272
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	115, 178
AluI	AGCT	2 cut(s)	115, 178
Alw26I	GTCTC	2 cut(s)	148, 257
AoxI	GGCC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	238
BccI	CCATC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	148, 257
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	2 cut(s)	33, 122
BlsI	GCNGC	2 cut(s)	34, 123
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bse1I	ACTGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	6 cut(s)	27, 62, 73, 104, 155, 164
Bsh1236I	CGCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	146
BsiWI	CGTACG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	148, 257
BsmBI	CGTCTC	1 cut(s)	257
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	5 cut(s)	32, 35, 121, 137, 173
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	28, 130
Bst6I	CTCTTC	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	2 cut(s)	148, 257
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 143
BstUI	CGCG	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	3 cut(s)	115, 146, 178
CviKI_1	RGCY	3 cut(s)	115, 146, 178
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
EciI	GGCGGA	3 cut(s)	50, 152, 188
Eco47I	GGWCC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	21, 224, 236
FatI	CATG	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	33, 122
Fsp4HI	GCNGC	2 cut(s)	33, 122
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	33, 122
HaeIII	GGCC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	156, 188
Hpy188III	TCNNGA	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	28, 130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 143
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	196
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	2 cut(s)	155, 185
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	4 cut(s)	22, 51, 206, 280
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	50, 109, 249, 252
MluCI	AATT	1 cut(s)	286
MlyI	GAGTC	2 cut(s)	150, 197
MmeI	TCCRAC	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	121, 143
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	1 cut(s)	238
NmeAIII	GCCGAG	1 cut(s)	172
NmuCI	GTSAC	2 cut(s)	22, 206
Pfl23II	CGTACG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	34, 123
PleI	GAGTC	2 cut(s)	150, 196
PpsI	GAGTC	2 cut(s)	150, 196
PspLI	CGTACG	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SatI	GCNGC	2 cut(s)	33, 122
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	2 cut(s)	150, 197
SetI	ASST	4 cut(s)	19, 117, 180, 186
SinI	GGWCC	1 cut(s)	238
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	5 cut(s)	32, 35, 121, 137, 173
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	28, 130
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	286
TauI	GCSGC	2 cut(s)	35, 124
TseFI	GTSAC	2 cut(s)	22, 206
Tsp45I	GTSAC	2 cut(s)	22, 206
TspDTI	ATGAA	1 cut(s)	110
TspGWI	ACGGA	2 cut(s)	70, 81
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	286
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.