Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014196.1

Orthogroup ID

OG0009112

Physical Location & Seq

Genomic Coordinates Forward (+)

2493 .. 2819

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014196.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggccgtgacgaagcaagttcctcaggtggaagacgacaagtcgctgaagaagagaaacgaagagctggagagagagctcaggaagagccaggagagagaggagaggatgaaggccgagttacagaagacgtttgagaggctcagagtggcagaggaggcggaggagaggctatgctcacagctcggtgagctagaggcggaggccgtcgatcaggcgcgttcagatcacgcgaggattctatcccttatgaaccagctttctcaggcacagcgtctcctccagtccgccgccgtttctcttccattagaattcgcctccaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.48

Weight (kDa)

5.35

Isoelectric Point (pI)

57.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49570 AT3G49580 AT3G49580 AT3G49580 AT5G24655 AT5G24660
fragaria_vesca	FvH4_7g33340
malus_domestica	MD01G1231600.v1.1 MD07G1303600.v1.1
prunus_persica	Prupe.2G322300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383321
rosa_laevigata	RLG00000026113
rosa_multiflora	Rmu_co8146602.1_g000001 Rmu_sc0007173.1_g000016 Rmu_sc0007173.1_g000017 Rmu_sc0014196.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277400
rosa_samantha	Rh1AG466300 Rh1BG423600 Rh1CG436800 Rh1DG456300
rosa_wichuraiana	Rw1G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	220, 233
AciI	CCGC	4 cut(s)	161, 200, 288, 291
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	68
AhdI	GACNNNNNGTC	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	5 cut(s)	67, 79, 184, 193, 259
AluI	AGCT	5 cut(s)	67, 79, 184, 193, 259
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	281
AoxI	GGCC	3 cut(s)	3, 114, 204
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	2 cut(s)	39, 134
Bbv12I	GWGCWC	1 cut(s)	81
BceAI	ACGGC	2 cut(s)	191, 278
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	92
BmeRI	GACNNNNNGTC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	92
BpiI	GAAGAC	2 cut(s)	39, 134
BpmI	CTGGAG	2 cut(s)	89, 266
Bpu10I	CCTNAGC	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse1I	ACTGG	1 cut(s)	283
Bse21I	CCTNAGG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	4 cut(s)	38, 94, 157, 278
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	4 cut(s)	116, 170, 179, 269
Bsh1236I	CGCG	2 cut(s)	220, 233
BshFI	GGCC	3 cut(s)	5, 116, 206
BsiHKAI	GWGCWC	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	281
BsmBI	CGTCTC	1 cut(s)	281
BsnI	GGCC	3 cut(s)	5, 116, 206
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	211, 226
BspACI	CCGC	4 cut(s)	161, 200, 288, 291
BspANI	GGCC	3 cut(s)	5, 116, 206
BspCNI	CTCAG	4 cut(s)	37, 93, 156, 277
BspFNI	CGCG	2 cut(s)	220, 233
BspQI	GCTCTTC	2 cut(s)	57, 80
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	2 cut(s)	211, 226
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	4 cut(s)	47, 57, 80, 306
BstDEI	CTNAG	4 cut(s)	24, 80, 143, 264
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	2 cut(s)	220, 233
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	2 cut(s)	214, 229
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	2 cut(s)	211, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 190
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	2 cut(s)	220, 233
BstV2I	GAAGAC	2 cut(s)	39, 134
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	5, 116, 206
BtsCI	GGATG	1 cut(s)	114
CfoI	GCGC	1 cut(s)	220
CseI	GACGC	1 cut(s)	263
DdeI	CTNAG	4 cut(s)	24, 80, 143, 264
DpnI	GATC	2 cut(s)	213, 228
DpnII	GATC	2 cut(s)	211, 226
DriI	GACNNNNNGTC	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	47, 57, 80, 306
Eam1105I	GACNNNNNGTC	1 cut(s)	40
EarI	CTCTTC	4 cut(s)	47, 57, 80, 306
EciI	GGCGGA	3 cut(s)	176, 215, 277
Ecl136II	GAGCTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	68
Eco81I	CCTNAGG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	90
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	281
FaiI	YATR	2 cut(s)	175, 251
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	2 cut(s)	89, 266
HaeIII	GGCC	3 cut(s)	5, 116, 206
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	146, 226
Hpy188III	TCNNGA	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 190
HpyF3I	CTNAG	4 cut(s)	24, 80, 143, 264
HpySE526I	ACGT	1 cut(s)	131
HspAI	GCGC	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	211, 226
LguI	GCTCTTC	2 cut(s)	57, 80
LpnPI	CCDG	9 cut(s)	11, 53, 67, 77, 104, 200, 251, 269, 296
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	7, 120
MalI	GATC	2 cut(s)	213, 228
MboI	GATC	2 cut(s)	211, 226
MboII	GAAGA	7 cut(s)	44, 61, 64, 74, 97, 139, 293
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	2 cut(s)	220, 233
MwoI	GCNNNNNNNGC	2 cut(s)	158, 190
NdeII	GATC	2 cut(s)	211, 226
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	7
PciSI	GCTCTTC	2 cut(s)	57, 80
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	81
SapI	GCTCTTC	2 cut(s)	57, 80
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	2 cut(s)	211, 226
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	7 cut(s)	30, 69, 81, 134, 186, 195, 261
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	4 cut(s)	161, 200, 288, 291
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	90
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	311
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	125, 266
XapI	RAATTY	1 cut(s)	311
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.