Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009112

Physical Location & Seq

Genomic Coordinates Reverse (-)

8440601 .. 8441364

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24655.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGGAAAAGGAGGAAACTATGTGATGGTGGCGGCTTCGGAGGTAGAGGAGCTACGACAGAAGAACGGAGAGATGGAGAAAGCGGTGGAGGAGATGAGGAAAGAGATGTTGCAGTTGTGGAGGAGGACACAGGTGGCTGAGGAGGCTGAGGAGCATCTTTGCTCTCAGCTTGCCGAGCTTGAAGCCGAATCTTTAGACCAGGCTCGTGATTACCACACTCGCATCATCTTTCTAACAAACCAGCTCTCTCGTTTCTCCTCCGACTCTGCCTCTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009987 GO:0009991 GO:0010438 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042742 GO:0043207 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:0080134 GO:0098542 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.56

Weight (kDa)

4.8

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSU	PF24980	14 - 65	4.3e-31	Response to Low Sulfur (LSU) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49570 AT3G49580 AT3G49580 AT3G49580 AT5G24655 AT5G24660
fragaria_vesca	FvH4_7g33340
malus_domestica	MD01G1231600.v1.1 MD07G1303600.v1.1
prunus_persica	Prupe.2G322300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383321
rosa_laevigata	RLG00000026113
rosa_multiflora	Rmu_co8146602.1_g000001 Rmu_sc0007173.1_g000016 Rmu_sc0007173.1_g000017 Rmu_sc0014196.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277400
rosa_samantha	Rh1AG466300 Rh1BG423600 Rh1CG436800 Rh1DG456300
rosa_wichuraiana	Rw1G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 83
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	4 cut(s)	52, 169, 178, 244
AluI	AGCT	4 cut(s)	52, 169, 178, 244
BauI	CACGAG	1 cut(s)	204
BbvCI	CCTCAGC	2 cut(s)	138, 147
BccI	CCATC	2 cut(s)	19, 67
BciT130I	CCWGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	277
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	163, 231
Bpu10I	CCTNAGC	2 cut(s)	138, 147
BseBI	CCWGG	1 cut(s)	200
BseMII	CTCAG	3 cut(s)	129, 138, 179
BseRI	GAGGAG	6 cut(s)	62, 104, 136, 155, 164, 247
BspACI	CCGC	2 cut(s)	32, 83
BspCNI	CTCAG	3 cut(s)	130, 139, 178
BssSI	CACGAG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	3 cut(s)	138, 147, 165
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 175
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	171
CviJI	RGCY	9 cut(s)	35, 52, 137, 146, 169, 178, 185, 203, 244
CviKI_1	RGCY	9 cut(s)	35, 52, 137, 146, 169, 178, 185, 203, 244
DdeI	CTNAG	3 cut(s)	138, 147, 165
EcoRII	CCWGG	1 cut(s)	198
FaiI	YATR	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	277
GluI	GCNGC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	188, 263
Hpy188I	TCNGA	2 cut(s)	40, 262
Hpy188III	TCNNGA	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 175
HpyF3I	CTNAG	3 cut(s)	138, 147, 165
LmnI	GCTCC	2 cut(s)	49, 151
LpnPI	CCDG	4 cut(s)	116, 185, 212, 254
LweI	GCATC	2 cut(s)	163, 231
MaeI	CTAG	1 cut(s)	277
MboII	GAAGA	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	257
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	143, 175
NmeAIII	GCCGAG	1 cut(s)	199
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
SatI	GCNGC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	6 cut(s)	45, 54, 135, 171, 180, 246
SfaNI	GCATC	2 cut(s)	163, 231
SsiI	CCGC	2 cut(s)	32, 83
SspMI	CTAG	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	198
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	188
TspGWI	ACGGA	1 cut(s)	81
XspI	CTAG	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.