Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009112

Physical Location & Seq

Genomic Coordinates Reverse (-)

29912554 .. 29913344

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G322300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCAAGGGCGTAAGCAGAATCACAAATTCGAAAGCAAGGTAGATACATTGAACCTGGACACACAGTTTTTGCCCTTTATAAACCCCACCACCAGACATACTCTGCAACAACACTTTGTTGTAAGCCTTCCAATTCCAAAGAAAGAAACAAAAATGGCGGTAACAAAGCAAGTGCCGGAGGTTGAAGAAGAGAAACTGCTGAGAAAGAGGAACGAGGAGCTGGAGATAGAGCTGAGAAAGAGCCAGGAGAGAGAGGAGCGCATGAAGGCTGAGCTGCAGAAGGCCCGTGAGAGGCTAAGAGTCGCCGAGGAGGCAGAGGAGCGGCTCTGCTCACAGCTCGGTGAGCTCGAAGCGGAGGCCGTCGATCAGGCTCGTACAGATCACGCTCGGATTCTGGCCCTCATGAACCAGCTCTCTCAGGCCCAACGCCTTCTCCAGGCTTCATCCGTTGCGCAGCCTTTGGGACTCGCTTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.4

Weight (kDa)

7.89

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49570 AT3G49580 AT3G49580 AT3G49580 AT5G24655 AT5G24660
fragaria_vesca	FvH4_7g33340
malus_domestica	MD01G1231600.v1.1 MD07G1303600.v1.1
prunus_persica	Prupe.2G322300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383321
rosa_laevigata	RLG00000026113
rosa_multiflora	Rmu_co8146602.1_g000001 Rmu_sc0007173.1_g000016 Rmu_sc0007173.1_g000017 Rmu_sc0014196.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277400
rosa_samantha	Rh1AG466300 Rh1BG423600 Rh1CG436800 Rh1DG456300
rosa_wichuraiana	Rw1G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
Acc16I	TGCGCA	1 cut(s)	453
AccBSI	CCGCTC	1 cut(s)	322
AciI	CCGC	3 cut(s)	158, 322, 353
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	291, 436
AgsI	TTSAA	2 cut(s)	52, 185
AjnI	CCWGG	3 cut(s)	54, 243, 435
AluBI	AGCT	6 cut(s)	220, 232, 274, 337, 346, 412
AluI	AGCT	6 cut(s)	220, 232, 274, 337, 346, 412
Alw21I	GWGCWC	1 cut(s)	348
AoxI	GGCC	4 cut(s)	282, 357, 396, 420
ApeKI	GCWGC	2 cut(s)	274, 454
ApoI	RAATTY	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	261, 454
AspS9I	GGNCC	3 cut(s)	283, 397, 421
AsuHPI	GGTGA	1 cut(s)	353
AsuII	TTCGAA	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	261, 466
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	3 cut(s)	56, 245, 437
BfmI	CTRYAG	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	311
BisI	GCNGC	3 cut(s)	275, 323, 455
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	3 cut(s)	276, 324, 456
Bme1390I	CCNGG	3 cut(s)	56, 245, 437
BmgT120I	GGNCC	3 cut(s)	283, 397, 421
BmrFI	CCNGG	3 cut(s)	56, 245, 437
BpmI	CTGGAG	2 cut(s)	242, 419
Bpu1102I	GCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	291, 436
BseBI	CCWGG	3 cut(s)	56, 245, 437
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	443
BseLI	CCNNNNNNNGG	2 cut(s)	291, 436
BseMII	CTCAG	4 cut(s)	191, 224, 261, 431
BseRI	GAGGAG	4 cut(s)	230, 269, 323, 332
BseXI	GCAGC	2 cut(s)	261, 466
BshFI	GGCC	4 cut(s)	284, 359, 398, 422
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	291, 436
BsnI	GGCC	4 cut(s)	284, 359, 398, 422
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	364, 379
Bsp1720I	GCTNAGC	1 cut(s)	270
BspACI	CCGC	3 cut(s)	158, 322, 353
BspANI	GGCC	4 cut(s)	284, 359, 398, 422
BspCNI	CTCAG	4 cut(s)	192, 225, 262, 430
BspHI	TCATGA	1 cut(s)	402
BspMAI	CTGCAG	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	364, 379
Bst2UI	CCWGG	3 cut(s)	56, 245, 437
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	30
BstDEI	CTNAG	5 cut(s)	200, 233, 270, 296, 417
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	443
BstHHI	GCGC	2 cut(s)	261, 454
BstKTI	GATC	2 cut(s)	367, 382
BstMBI	GATC	2 cut(s)	364, 379
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 343
BstNI	CCWGG	3 cut(s)	56, 245, 437
BstSCI	CCNGG	3 cut(s)	54, 243, 435
BstSFI	CTRYAG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	261, 466
BsuRI	GGCC	4 cut(s)	284, 359, 398, 422
BtsCI	GGATG	1 cut(s)	443
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	2 cut(s)	261, 454
Cfr13I	GGNCC	3 cut(s)	283, 397, 421
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	2 cut(s)	262, 403
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	5 cut(s)	200, 233, 270, 296, 417
DpnI	GATC	2 cut(s)	366, 381
DpnII	GATC	2 cut(s)	364, 379
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoRII	CCWGG	3 cut(s)	54, 243, 435
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	2 cut(s)	265, 406
FaiI	YATR	4 cut(s)	80, 99, 263, 404
FatI	CATG	2 cut(s)	261, 402
Fnu4HI	GCNGC	3 cut(s)	275, 323, 455
FokI	GGATG	1 cut(s)	430
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	3 cut(s)	275, 323, 455
FspI	TGCGCA	1 cut(s)	453
GlaI	GCGC	2 cut(s)	260, 453
GluI	GCNGC	3 cut(s)	275, 323, 455
GsuI	CTGGAG	2 cut(s)	242, 419
HaeIII	GGCC	4 cut(s)	284, 359, 398, 422
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	2 cut(s)	261, 454
Hin1II	CATG	2 cut(s)	265, 406
Hin6I	GCGC	2 cut(s)	259, 452
HinP1I	GCGC	2 cut(s)	259, 452
HinfI	GANTC	4 cut(s)	19, 300, 391, 465
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	1 cut(s)	403
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	4 cut(s)	137, 259, 274, 440
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	4, 106, 277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 343
HpyF3I	CTNAG	5 cut(s)	200, 233, 270, 296, 417
Hsp92II	CATG	2 cut(s)	265, 406
HspAI	GCGC	2 cut(s)	259, 452
Kzo9I	GATC	2 cut(s)	364, 379
LmnI	GCTCC	3 cut(s)	217, 256, 319
Lsp1109I	GCAGC	2 cut(s)	261, 466
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	366, 381
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	2 cut(s)	364, 379
MboII	GAAGA	2 cut(s)	197, 200
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	2 cut(s)	26, 132
MlyI	GAGTC	2 cut(s)	309, 459
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	3 cut(s)	56, 245, 437
MvaI	CCWGG	3 cut(s)	56, 245, 437
MwoI	GCNNNNNNNGC	2 cut(s)	311, 343
NdeII	GATC	2 cut(s)	364, 379
NlaIII	CATG	2 cut(s)	265, 406
NmeAIII	GCCGAG	1 cut(s)	331
NsbI	TGCGCA	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	30
PagI	TCATGA	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	19, 391
PkrI	GCNGC	3 cut(s)	276, 324, 456
PleI	GAGTC	2 cut(s)	308, 459
PpsI	GAGTC	2 cut(s)	308, 459
PsiI	TTATAA	1 cut(s)	80
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	3 cut(s)	54, 243, 435
PspGI	CCWGG	3 cut(s)	54, 243, 435
PspPI	GGNCC	3 cut(s)	283, 397, 421
PstI	CTGCAG	1 cut(s)	279
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	348
SatI	GCNGC	3 cut(s)	275, 323, 455
Sau3AI	GATC	2 cut(s)	364, 379
Sau96I	GGNCC	3 cut(s)	283, 397, 421
SchI	GAGTC	2 cut(s)	309, 459
ScrFI	CCNGG	3 cut(s)	56, 245, 437
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	9 cut(s)	42, 57, 183, 222, 234, 276, 339, 348, 414
SfcI	CTRYAG	1 cut(s)	275
SfuI	TTCGAA	1 cut(s)	30
Sse9I	AATT	2 cut(s)	26, 132
SsiI	CCGC	3 cut(s)	158, 322, 353
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	54, 243, 435
TaaI	ACNGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	30, 348, 363
TasI	AATT	2 cut(s)	26, 132
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	2 cut(s)	19, 391
TseI	GCWGC	2 cut(s)	274, 454
TspDTI	ATGAA	3 cut(s)	278, 419, 432
TspGWI	ACGGA	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	434
XapI	RAATTY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.