Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009112

Physical Location & Seq

Genomic Coordinates Reverse (-)

23722259 .. 23722588

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTGTGACGTCGAAGCAGGTTCCTCAGGTGGAAGACGACAAGTCGCTGAAGAAGAGGAACGAGGAGCTGGAGAGGGAGCTGAGGAAGAGCCAGGAGAGAGAGGAGAGGATGAAGGCTGAGTTACAGAAGACGTTTGAGAGGCTTAGAGTGGCGGAAGAGGCGGAGGAGATGCTGTGCTCACAGCTCGGTGAGCTAGAGGCCGAGGCAATCGATCAGGCGCGTTCTGATCACGCGAGGATTCTATCCCTGCTGAACCAGCTAGCTCAGGCGCAGCGTCTTCTTCAGTCTGCTTCGGTTTCTCTACCGTTGGAATTCGCCGCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008544 GO:0009058 GO:0009059 GO:0009330 GO:0009653 GO:0009888 GO:0009913 GO:0009987 GO:0010026 GO:0010090 GO:0016043 GO:0022402 GO:0022622 GO:0030154 GO:0030307 GO:0030855 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0034641 GO:0034645 GO:0040008 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045927 GO:0046483 GO:0048364 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051128 GO:0051276 GO:0060429 GO:0065007 GO:0071704 GO:0071840 GO:0090304 GO:0090558 GO:0090626 GO:0097159 GO:0099402 GO:1901360 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.52

Weight (kDa)

5.18

Isoelectric Point (pI)

57.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSU	PF24980	16 - 70	9.5e-09	Response to Low Sulfur (LSU) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49570 AT3G49580 AT3G49580 AT3G49580 AT5G24655 AT5G24660
fragaria_vesca	FvH4_7g33340
malus_domestica	MD01G1231600.v1.1 MD07G1303600.v1.1
prunus_persica	Prupe.2G322300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383321
rosa_laevigata	RLG00000026113
rosa_multiflora	Rmu_co8146602.1_g000001 Rmu_sc0007173.1_g000016 Rmu_sc0007173.1_g000017 Rmu_sc0014196.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277400
rosa_samantha	Rh1AG466300 Rh1BG423600 Rh1CG436800 Rh1DG456300
rosa_wichuraiana	Rw1G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	10
AccII	CGCG	2 cut(s)	223, 236
AciI	CCGC	3 cut(s)	155, 164, 321
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	2 cut(s)	71, 269
AcyI	GRCGYC	1 cut(s)	11
AhdI	GACNNNNNGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	6 cut(s)	70, 82, 187, 196, 262, 266
AluI	AGCT	6 cut(s)	70, 82, 187, 196, 262, 266
Alw21I	GWGCWC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	314
AspLEI	GCGC	2 cut(s)	223, 274
AsuHPI	GGTGA	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	262
AxyI	CCTNAGG	1 cut(s)	27
BbsI	GAAGAC	3 cut(s)	42, 137, 272
Bbv12I	GWGCWC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	229
BfaI	CTAG	2 cut(s)	197, 263
BfuAI	ACCTGC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	275, 321
BlsI	GCNGC	2 cut(s)	276, 322
Bme1390I	CCNGG	1 cut(s)	95
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	162
BmtI	GCTAGC	1 cut(s)	266
BpiI	GAAGAC	3 cut(s)	42, 137, 272
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	2 cut(s)	83, 267
Bsa29I	ATCGAT	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse21I	CCTNAGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	95
BseCI	ATCGAT	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	117
BseMII	CTCAG	4 cut(s)	41, 74, 111, 281
BseRI	GAGGAG	3 cut(s)	80, 119, 182
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	2 cut(s)	223, 236
BshFI	GGCC	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	214, 229
BspACI	CCGC	3 cut(s)	155, 164, 321
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	4 cut(s)	40, 75, 112, 280
BspDI	ATCGAT	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	223, 236
BspLI	GGNNCC	1 cut(s)	24
BspMI	ACCTGC	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	2 cut(s)	214, 229
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	3 cut(s)	50, 83, 153
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	5 cut(s)	27, 83, 120, 146, 267
BstF5I	GGATG	1 cut(s)	117
BstFNI	CGCG	2 cut(s)	223, 236
BstHHI	GCGC	2 cut(s)	223, 274
BstKTI	GATC	2 cut(s)	217, 232
BstMBI	GATC	2 cut(s)	214, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 193, 259
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstUI	CGCG	2 cut(s)	223, 236
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	3 cut(s)	42, 137, 272
Bsu15I	ATCGAT	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	203
BsuTUI	ATCGAT	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	2 cut(s)	223, 274
ClaI	ATCGAT	1 cut(s)	213
CseI	GACGC	1 cut(s)	266
DdeI	CTNAG	5 cut(s)	27, 83, 120, 146, 267
DpnI	GATC	2 cut(s)	216, 231
DpnII	GATC	2 cut(s)	214, 229
DriI	GACNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	50, 83, 153
Eam1105I	GACNNNNNGTC	1 cut(s)	43
EarI	CTCTTC	3 cut(s)	50, 83, 153
EciI	GGCGGA	2 cut(s)	170, 179
Eco57I	CTGAAG	2 cut(s)	71, 269
Eco81I	CCTNAGG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	93
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	275, 321
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	275, 321
FspBI	CTAG	2 cut(s)	197, 263
GlaI	GCGC	2 cut(s)	222, 273
GluI	GCNGC	2 cut(s)	275, 321
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	203
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	223, 274
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	2 cut(s)	221, 272
HinP1I	GCGC	2 cut(s)	221, 272
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	229
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	2 cut(s)	11, 134
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 193, 259
HpyF3I	CTNAG	5 cut(s)	27, 83, 120, 146, 267
HpySE526I	ACGT	2 cut(s)	11, 134
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	2 cut(s)	221, 272
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	214, 229
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	67, 79
LpnPI	CCDG	9 cut(s)	5, 14, 56, 80, 107, 203, 254, 263, 272
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	2 cut(s)	197, 263
MaeII	ACGT	2 cut(s)	11, 134
MaeIII	GTNAC	2 cut(s)	7, 123
MalI	GATC	2 cut(s)	216, 231
MboI	GATC	2 cut(s)	214, 229
MboII	GAAGA	8 cut(s)	47, 64, 67, 100, 142, 170, 272, 275
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	2 cut(s)	223, 236
MwoI	GCNNNNNNNGC	3 cut(s)	161, 193, 259
NdeII	GATC	2 cut(s)	214, 229
NheI	GCTAGC	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	24
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	7
PciSI	GCTCTTC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	276, 322
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	83
SatI	GCNGC	2 cut(s)	275, 321
Sau3AI	GATC	2 cut(s)	214, 229
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	162
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	3 cut(s)	155, 164, 321
SspMI	CTAG	2 cut(s)	197, 263
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	2 cut(s)	14, 137
TaqI	TCGA	2 cut(s)	14, 213
TasI	AATT	1 cut(s)	314
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	128
XapI	RAATTY	1 cut(s)	314
XspI	CTAG	2 cut(s)	197, 263
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.