Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009112

Physical Location & Seq

Genomic Coordinates Reverse (-)

18374908 .. 18375940

Gene Structure 1033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCGAACCGAGGAGGATGCGTGACGGTGGCGGCGGAAGAGATGGATGAGCTAAGGAGGAGGAACATAGAGCTCTCGAGAGAAGTGGCGGAGATGAAGACAGAAATGATTAAGTTGTGGCAGCGAACGGTTGTGGCGGAGGAGGCGGAAGAGCAACTCTGCTCGCAGCTGGCGGAGCTGGAGGTCGAGTCTTTAGAACAGGCACGTGACTATCACGATCGCATGCTCTTCCTCATGGATCAAATCTCTCGTCTCTCTTCTTCTTCTGTCGTCTCTTCCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0006996 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009987 GO:0009991 GO:0010438 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0042742 GO:0043207 GO:0045893 GO:0045935 GO:0047484 GO:0048518 GO:0048522 GO:0048580 GO:0048583 GO:0048587 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071496 GO:0071840 GO:0080090 GO:0080134 GO:0098542 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.78

Weight (kDa)

4.61

Isoelectric Point (pI)

71.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSU	PF24980	28 - 46	5.3e-07	Response to Low Sulfur (LSU) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49570 AT3G49580 AT3G49580 AT3G49580 AT5G24655 AT5G24660
fragaria_vesca	FvH4_7g33340
malus_domestica	MD01G1231600.v1.1 MD07G1303600.v1.1
prunus_persica	Prupe.2G322300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0383321
rosa_laevigata	RLG00000026113
rosa_multiflora	Rmu_co8146602.1_g000001 Rmu_sc0007173.1_g000016 Rmu_sc0007173.1_g000017 Rmu_sc0014196.1_g000001
rosa_roxburghii	Rroxscaffold_4G00277400
rosa_samantha	Rh1AG466300 Rh1BG423600 Rh1CG436800 Rh1DG456300
rosa_wichuraiana	Rw1G040620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	32, 35, 89, 137, 146, 173
AclWI	GGATC	1 cut(s)	246
AcvI	CACGTG	1 cut(s)	206
AluBI	AGCT	4 cut(s)	52, 73, 169, 178
AluI	AGCT	4 cut(s)	52, 73, 169, 178
Alw21I	GWGCWC	1 cut(s)	75
Alw26I	GTCTC	2 cut(s)	257, 277
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	121, 166
ArsI	GACNNNNNNTTYG	2 cut(s)	235, 267
AvaI	CYCGRG	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	75
BbrPI	CACGTG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	133, 178
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	257, 277
BisI	GCNGC	3 cut(s)	33, 122, 167
BlsI	GCNGC	3 cut(s)	34, 123, 168
BmeT110I	CYCGRG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	8
BpiI	GAAGAC	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	53
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	10
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 173, 203
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	2 cut(s)	23, 52
BseRI	GAGGAG	3 cut(s)	27, 73, 155
BseXI	GCAGC	2 cut(s)	133, 178
Bsh1285I	CGRYCG	1 cut(s)	220
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	75
BsiHKCI	CYCGRG	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	257, 277
BsmBI	CGTCTC	2 cut(s)	257, 277
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	217, 238
BspACI	CCGC	6 cut(s)	32, 35, 89, 137, 146, 173
BspPI	GGATC	1 cut(s)	246
BspQI	GCTCTTC	2 cut(s)	144, 233
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	217, 238
Bst4CI	ACNGT	2 cut(s)	28, 130
Bst6I	CTCTTC	5 cut(s)	33, 144, 233, 262, 280
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	164, 171, 224
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	23, 52
BstKTI	GATC	2 cut(s)	220, 241
BstMAI	GTCTC	2 cut(s)	257, 277
BstMBI	GATC	2 cut(s)	217, 238
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 175
BstNSI	RCATGY	1 cut(s)	226
BstV1I	GCAGC	2 cut(s)	133, 178
BstV2I	GAAGAC	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	23, 52
Cac8I	GCNNGC	3 cut(s)	164, 171, 224
CviAII	CATG	2 cut(s)	223, 235
CviJI	RGCY	4 cut(s)	52, 73, 169, 178
CviKI_1	RGCY	4 cut(s)	52, 73, 169, 178
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	219, 240
DpnII	GATC	2 cut(s)	217, 238
Eam1104I	CTCTTC	5 cut(s)	33, 144, 233, 262, 280
EarI	CTCTTC	5 cut(s)	33, 144, 233, 262, 280
EciI	GGCGGA	5 cut(s)	50, 104, 152, 161, 188
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
Esp3I	CGTCTC	2 cut(s)	257, 277
FaeI	CATG	2 cut(s)	226, 238
FaiI	YATR	3 cut(s)	68, 224, 236
FatI	CATG	2 cut(s)	222, 234
Fnu4HI	GCNGC	3 cut(s)	33, 122, 167
FokI	GGATG	2 cut(s)	30, 59
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	3 cut(s)	33, 122, 167
GluI	GCNGC	3 cut(s)	33, 122, 167
GsuI	CTGGAG	1 cut(s)	200
Hin1II	CATG	2 cut(s)	226, 238
HinfI	GANTC	1 cut(s)	188
Hpy188III	TCNNGA	3 cut(s)	76, 78, 215
HpyCH4III	ACNGT	2 cut(s)	28, 130
HpyCH4IV	ACGT	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 175
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	226, 238
Kzo9I	GATC	2 cut(s)	217, 238
LguI	GCTCTTC	2 cut(s)	144, 233
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	3 cut(s)	155, 164, 185
Lsp1109I	GCAGC	2 cut(s)	133, 178
LweI	GCATC	1 cut(s)	8
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	22, 206
MalI	GATC	2 cut(s)	219, 240
MboI	GATC	2 cut(s)	217, 238
MboII	GAAGA	8 cut(s)	50, 109, 161, 220, 249, 252, 255, 267
MhlI	GDGCHC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	8 cut(s)	5, 8, 51, 54, 133, 136, 175, 242
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	143, 175
NdeII	GATC	2 cut(s)	217, 238
NlaIII	CATG	2 cut(s)	226, 238
NmuCI	GTSAC	2 cut(s)	22, 206
NspI	RCATGY	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	76
PciSI	GCTCTTC	2 cut(s)	144, 233
PkrI	GCNGC	3 cut(s)	34, 123, 168
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	1 cut(s)	196
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	75
PspCI	CACGTG	1 cut(s)	206
PvuI	CGATCG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	169
SacI	GAGCTC	1 cut(s)	75
SapI	GCTCTTC	2 cut(s)	144, 233
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	33, 122, 167
Sau3AI	GATC	2 cut(s)	217, 238
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	6 cut(s)	54, 75, 171, 180, 186, 208
SfaNI	GCATC	1 cut(s)	8
Sfr274I	CTCGAG	1 cut(s)	76
SlaI	CTCGAG	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SphI	GCATGC	1 cut(s)	226
SsiI	CCGC	6 cut(s)	32, 35, 89, 137, 146, 173
SstI	GAGCTC	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	28, 130
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	77, 186
TauI	GCSGC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	22, 206
TseI	GCWGC	2 cut(s)	121, 166
Tsp45I	GTSAC	2 cut(s)	22, 206
TspDTI	ATGAA	1 cut(s)	110
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.