RchiOBHm_Chr1g0383321

cellular response to sulfur starvation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009112
Physical Location & Seq
Reverse (-)
67694723 .. 67695423
701 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60626

Sequence Viewer

Length: 327 bp
ATGGCCGTGACGAAGCAAGTTCCTCAGGTGGAAGACGACAAGTCGCTGAAGAAGAGAAACGAAGAGCTGGAGAGAGAGCTCAGGAAGAGCCAGGAGAGGGAGGAGAGGATGAAGGCCGAGTTACAGAAGACGTTTGAGAGGCTCAGAGTGGCAGAGGAGGCGGAGGAGAGGCTATGCTCACAGCTCGGTGAGCTAGAGGCGGAGGCCGTCGATCAGGCGCGTTCAGATCACGCGAGGATTCTATCCCTTATGAACCAGCTTTCTCAGGCACAGCGTCTCCTCCAGTCCGCCGCCGTTTCTCTTCCATTAGAATTCGCCTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.48

Weight (kDa)

5.35

Isoelectric Point (pI)

57.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSU PF24980 15 - 69 1.2e-09 Response to Low Sulfur (LSU) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 220, 233
AciI CCGC 4 cut(s) 161, 200, 288, 291
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 97
AhdI GACNNNNNGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 5 cut(s) 67, 79, 184, 193, 259
AluI AGCT 5 cut(s) 67, 79, 184, 193, 259
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 3 cut(s) 3, 114, 204
ApoI RAATTY 1 cut(s) 311
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 24
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 2 cut(s) 39, 134
Bbv12I GWGCWC 1 cut(s) 81
BceAI ACGGC 2 cut(s) 191, 278
BciT130I CCWGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 92
BmeRI GACNNNNNGTC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 92
BpiI GAAGAC 2 cut(s) 39, 134
BpmI CTGGAG 2 cut(s) 89, 266
Bpu10I CCTNAGC 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 283
Bse21I CCTNAGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 4 cut(s) 38, 94, 157, 278
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 4 cut(s) 116, 170, 179, 269
Bsh1236I CGCG 2 cut(s) 220, 233
BshFI GGCC 3 cut(s) 5, 116, 206
BsiHKAI GWGCWC 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 281
BsmBI CGTCTC 1 cut(s) 281
BsnI GGCC 3 cut(s) 5, 116, 206
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 2 cut(s) 211, 226
BspACI CCGC 4 cut(s) 161, 200, 288, 291
BspANI GGCC 3 cut(s) 5, 116, 206
BspCNI CTCAG 4 cut(s) 37, 93, 156, 277
BspFNI CGCG 2 cut(s) 220, 233
BspQI GCTCTTC 2 cut(s) 57, 80
BsrI ACTGG 1 cut(s) 283
BssMI GATC 2 cut(s) 211, 226
Bst2UI CCWGG 1 cut(s) 92
Bst6I CTCTTC 4 cut(s) 47, 57, 80, 306
BstDEI CTNAG 4 cut(s) 24, 80, 143, 264
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 2 cut(s) 220, 233
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 214, 229
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 211, 226
BstMWI GCNNNNNNNGC 2 cut(s) 158, 190
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 2 cut(s) 220, 233
BstV2I GAAGAC 2 cut(s) 39, 134
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 3 cut(s) 5, 116, 206
BtsCI GGATG 1 cut(s) 114
CfoI GCGC 1 cut(s) 220
CseI GACGC 1 cut(s) 263
DdeI CTNAG 4 cut(s) 24, 80, 143, 264
DpnI GATC 2 cut(s) 213, 228
DpnII GATC 2 cut(s) 211, 226
DriI GACNNNNNGTC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 47, 57, 80, 306
Eam1105I GACNNNNNGTC 1 cut(s) 40
EarI CTCTTC 4 cut(s) 47, 57, 80, 306
EciI GGCGGA 3 cut(s) 176, 215, 277
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 68
Eco81I CCTNAGG 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 79
EcoRI GAATTC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 281
FaiI YATR 2 cut(s) 175, 251
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 291
GsuI CTGGAG 2 cut(s) 89, 266
HaeIII GGCC 3 cut(s) 5, 116, 206
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 220
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HinfI GANTC 1 cut(s) 238
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 2 cut(s) 146, 226
Hpy188III TCNNGA 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 190
HpyF3I CTNAG 4 cut(s) 24, 80, 143, 264
HpySE526I ACGT 1 cut(s) 131
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 211, 226
LguI GCTCTTC 2 cut(s) 57, 80
LpnPI CCDG 9 cut(s) 11, 53, 67, 77, 104, 200, 251, 269, 296
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 7, 120
MalI GATC 2 cut(s) 213, 228
MboI GATC 2 cut(s) 211, 226
MboII GAAGA 7 cut(s) 44, 61, 64, 74, 97, 139, 293
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 2 cut(s) 220, 233
MwoI GCNNNNNNNGC 2 cut(s) 158, 190
NdeII GATC 2 cut(s) 211, 226
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 7
PciSI GCTCTTC 2 cut(s) 57, 80
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
SacI GAGCTC 1 cut(s) 81
SapI GCTCTTC 2 cut(s) 57, 80
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 2 cut(s) 211, 226
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 81
SetI ASST 7 cut(s) 30, 69, 81, 134, 186, 195, 261
Sse9I AATT 1 cut(s) 311
SsiI CCGC 4 cut(s) 161, 200, 288, 291
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 90
TaiI ACGT 1 cut(s) 134
TaqI TCGA 1 cut(s) 210
TasI AATT 1 cut(s) 311
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 238
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 2 cut(s) 125, 266
XapI RAATTY 1 cut(s) 311
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.