Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010640

Physical Location & Seq

Genomic Coordinates Reverse (-)

18741444 .. 18744174

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATCCGGCGACTAATTCACCGATTATGCCGATTGATTTACCGATTATGCACGACAGTGATCGTTACGACTTCGTTAAAGATATTGGCTCTGGTAATTTCGGCGTTGCTCGTCTCATGACCGATAGAGTCACCAAGGAGCTTGTTGCTGTTAAATACATCGAGAGAGGAGAAAAGATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGTTTAAAGAGGTGATTTTGACGCCTTCCCATTTGGCTATTGTTATGGAATATGCTGCTGGTGGAGAACTTTATGAGCGGATTTGTAATGCCGGACGGTTTAGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTATATCTGGAGTTAGCTATTGTCATGCAATGCAAATATGCCATCGGGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGTCTTCTGTTCTTCATTCCCAACCAAAGTCAACTGTTGGTACTCCTGCATACATTGCACCAGAGATTCTTCTTCGACAGGAATATGATGGCAAGCTTGCAGATGTATGGTCTTGCGGTGTAACATTATATGTAATGTTGGTTGGAGCTTATCCATTCGAGGATCCACAGGAGCCACGAGATTATCGAAAGACAATACAAAGAATCCTTAGTGTCACATACTCGATCCCAGAGGACTTACACCTCTCACCAGAATGTCGCCATCTAATATCGAGGATCTTCGTGGCTGATCCGGCAACAAGAATCACTATTCCGGAGATCACATCCGATAAATGGTTCTTGAAGAATCTACCAGGTGATTTGATGGATGAGAACCGAATGGGAAGTCAGTTTCAAGAGCCTGAGCAGCCAATGCAGAGCCTTGACACGATTATGCAGATAATATCGGAGGCTACGATTCCGACTGTTCGTAATCGTTGCCTCGATGATTTCATGGCGGATAATCTTGATCTAGACGATGACATGGATGACTTTGATTCCGAATCTGAGATTGATGTTGACAGTAGTGGAGAGATAGTTTATGCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

362

Amino Acids

41.21

Weight (kDa)

4.71

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 286	1.3e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 282	1.4e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50500 AT3G50500 AT5G66880 AT5G66880
fragaria_vesca	FvH4_1g15440 FvH4_1g15440 FvH4_1g15440 FvH4_1g15440
malus_domestica	MD02G1166500.v1.1 MD15G1279000.v1.1
prunus_persica	Prupe.7G138200_v2.0.a1 Prupe.7G138200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104671
rosa_laevigata	RLG00000017350
rosa_multiflora	Rmu_sc0002316.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138850
rosa_rugosa	Rorug02G0121700
rosa_samantha	Rh2BG179500 Rh2DG178300
rosa_wichuraiana	Rw2G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	319
AccIII	TCCGGA	1 cut(s)	811
AciI	CCGC	3 cut(s)	319, 615, 995
AclWI	GGATC	7 cut(s)	12, 432, 656, 669, 718, 782, 782
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	831
AgsI	TTSAA	3 cut(s)	475, 841, 893
AjnI	CCWGG	1 cut(s)	850
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	6 cut(s)	142, 376, 393, 433, 595, 647
AluI	AGCT	6 cut(s)	142, 376, 393, 433, 595, 647
Alw26I	GTCTC	2 cut(s)	119, 217
AlwI	GGATC	7 cut(s)	12, 432, 656, 669, 718, 782, 782
Aor13HI	TCCGGA	1 cut(s)	811
ApeKI	GCWGC	3 cut(s)	296, 373, 904
ArsI	GACNNNNNNTTYG	2 cut(s)	868, 900
Asp700I	GAANNNNTTC	1 cut(s)	189
AsuHPI	GGTGA	5 cut(s)	12, 124, 265, 738, 866
BamHI	GGATCC	2 cut(s)	4, 661
BanI	GGYRCC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	3 cut(s)	283, 385, 916
BccI	CCATC	5 cut(s)	426, 446, 581, 768, 856
BciT130I	CCWGG	1 cut(s)	852
BcoDI	GTCTC	2 cut(s)	119, 217
BfaI	CTAG	1 cut(s)	1010
BisI	GCNGC	3 cut(s)	297, 374, 905
BlsI	GCNGC	3 cut(s)	298, 375, 906
Bme1390I	CCNGG	1 cut(s)	852
BmiI	GGNNCC	4 cut(s)	6, 465, 663, 672
BmrFI	CCNGG	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	900
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	1059, 1089
Bsc4I	CCNNNNNNNGG	1 cut(s)	831
Bse3DI	GCAATG	2 cut(s)	411, 552
BseAI	TCCGGA	1 cut(s)	811
BseBI	CCWGG	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	4 cut(s)	226, 821, 871, 1030
BseLI	CCNNNNNNNGG	1 cut(s)	831
BseMI	GCAATG	2 cut(s)	411, 552
BseMII	CTCAG	2 cut(s)	891, 1035
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	3 cut(s)	283, 385, 916
BshNI	GGYRCC	1 cut(s)	463
BsiSI	CCGG	5 cut(s)	8, 333, 461, 791, 812
BslI	CCNNNNNNNGG	1 cut(s)	831
BsmAI	GTCTC	2 cut(s)	119, 217
BsmBI	CGTCTC	1 cut(s)	119
Bsp13I	TCCGGA	1 cut(s)	811
BspACI	CCGC	3 cut(s)	319, 615, 995
BspCNI	CTCAG	2 cut(s)	892, 1036
BspEI	TCCGGA	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	117
BspLI	GGNNCC	4 cut(s)	6, 465, 663, 672
BspPI	GGATC	7 cut(s)	12, 432, 656, 669, 718, 782, 782
BspT107I	GGYRCC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	319
BsrDI	GCAATG	2 cut(s)	411, 552
BssECI	CCNNGG	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	675
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	675
Bst2UI	CCWGG	1 cut(s)	852
Bst4CI	ACNGT	5 cut(s)	59, 339, 535, 964, 1061
BstACI	GRCGYC	1 cut(s)	263
BstAPI	GCANNNNNTGC	2 cut(s)	554, 910
BstC8I	GCNNGC	2 cut(s)	593, 597
BstDEI	CTNAG	3 cut(s)	707, 900, 1044
BstF5I	GGATG	4 cut(s)	226, 821, 871, 1030
BstMAI	GTCTC	2 cut(s)	119, 217
BstMWI	GCNNNNNNNGC	4 cut(s)	554, 791, 904, 910
BstNI	CCWGG	1 cut(s)	852
BstSCI	CCNGG	1 cut(s)	850
BstV1I	GCAGC	3 cut(s)	283, 385, 916
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	4 cut(s)	4, 424, 661, 774
BstYI	RGATCY	4 cut(s)	4, 424, 661, 774
BtsCI	GGATG	4 cut(s)	226, 821, 871, 1030
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	593, 597
CciI	TCATGA	1 cut(s)	117
CseI	GACGC	1 cut(s)	271
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	1 cut(s)	540
CviAII	CATG	4 cut(s)	118, 401, 991, 1021
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	3 cut(s)	707, 900, 1044
DraI	TTTAAA	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	1010
Eco130I	CCWWGG	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	4 cut(s)	121, 404, 994, 1024
FatI	CATG	4 cut(s)	117, 400, 990, 1020
Fnu4HI	GCNGC	3 cut(s)	297, 374, 905
FokI	GGATG	4 cut(s)	213, 808, 878, 1037
Fsp4HI	GCNGC	3 cut(s)	297, 374, 905
FspBI	CTAG	1 cut(s)	1010
GluI	GCNGC	3 cut(s)	297, 374, 905
GsuI	CTGGAG	1 cut(s)	405
HapII	CCGG	5 cut(s)	8, 333, 461, 791, 812
HgaI	GACGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	121, 404, 994, 1024
HincII	GTYRAC	2 cut(s)	531, 1057
HindII	GTYRAC	2 cut(s)	531, 1057
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	8 cut(s)	129, 565, 702, 801, 844, 955, 1034, 1040
HpaII	CCGG	5 cut(s)	8, 333, 461, 791, 812
HphI	GGTGA	5 cut(s)	12, 124, 265, 738, 866
Hpy166II	GTNNAC	2 cut(s)	531, 1057
Hpy188I	TCNGA	8 cut(s)	195, 429, 826, 946, 960, 1039, 1045, 1088
Hpy188III	TCNNGA	9 cut(s)	118, 163, 384, 422, 812, 838, 893, 1004, 1010
Hpy8I	GTNNAC	2 cut(s)	531, 1057
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	5 cut(s)	59, 339, 535, 964, 1061
HpyCH4V	TGCA	8 cut(s)	52, 404, 409, 548, 557, 599, 913, 934
HpyF10VI	GCNNNNNNNGC	4 cut(s)	554, 791, 904, 910
HpyF3I	CTNAG	3 cut(s)	707, 900, 1044
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	121, 404, 994, 1024
Kpn2I	TCCGGA	1 cut(s)	811
LmnI	GCTCC	3 cut(s)	139, 644, 670
Lsp1109I	GCAGC	3 cut(s)	283, 385, 916
MabI	ACCWGGT	1 cut(s)	850
MaeI	CTAG	1 cut(s)	1010
MaeIII	GTNAC	4 cut(s)	65, 130, 619, 712
MbiI	CCGCTC	1 cut(s)	319
MboII	GAAGA	8 cut(s)	355, 359, 495, 503, 560, 563, 769, 853
MflI	RGATCY	4 cut(s)	4, 424, 661, 774
MluCI	AATT	2 cut(s)	16, 97
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	622, 983
MroI	TCCGGA	1 cut(s)	811
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	3 cut(s)	78, 153, 246
MslI	CAYNNNNRTG	3 cut(s)	57, 751, 929
MspI	CCGG	5 cut(s)	8, 333, 461, 791, 812
MspR9I	CCNGG	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	852
MwoI	GCNNNNNNNGC	4 cut(s)	554, 791, 904, 910
NlaIII	CATG	4 cut(s)	121, 404, 994, 1024
NlaIV	GGNNCC	4 cut(s)	6, 465, 663, 672
NmuCI	GTSAC	2 cut(s)	130, 712
OliI	CACNNNNGTG	1 cut(s)	57
PagI	TCATGA	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	2 cut(s)	682, 950
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	7 cut(s)	565, 702, 801, 844, 955, 1034, 1040
PkrI	GCNGC	3 cut(s)	298, 375, 906
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	850
PspGI	CCWGG	1 cut(s)	850
PspN4I	GGNNCC	4 cut(s)	6, 465, 663, 672
PsuI	RGATCY	4 cut(s)	4, 424, 661, 774
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
RseI	CAYNNNNRTG	3 cut(s)	57, 751, 929
SaqAI	TTAA	3 cut(s)	78, 153, 246
SatI	GCNGC	3 cut(s)	297, 374, 905
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	852
SexAI	ACCWGGT	1 cut(s)	850
SmiMI	CAYNNNNRTG	3 cut(s)	57, 751, 929
Sse9I	AATT	2 cut(s)	16, 97
SsiI	CCGC	3 cut(s)	319, 615, 995
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	1010
StyD4I	CCNGG	1 cut(s)	850
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	5 cut(s)	59, 339, 535, 964, 1061
TaqI	TCGA	7 cut(s)	162, 574, 657, 685, 722, 770, 981
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	16, 97
TfiI	GAWTC	7 cut(s)	565, 702, 801, 844, 955, 1034, 1040
Tru1I	TTAA	3 cut(s)	78, 153, 246
Tru9I	TTAA	3 cut(s)	78, 153, 246
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	2 cut(s)	130, 712
TseI	GCWGC	3 cut(s)	296, 373, 904
Tsp45I	GTSAC	2 cut(s)	130, 712
TspDTI	ATGAA	3 cut(s)	198, 503, 979
TspRI	CASTG	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	1009
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.