Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010640

Physical Location & Seq

Genomic Coordinates Reverse (-)

15936786 .. 15939698

Gene Structure 2913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG179500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGAATTGGGGTGGCAACTTATTTGGATTTGTTTTTTGCCTTGATGAAGCAAGTATGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGTCCAGCTCCTCGCTTAAAGATATGTGATTTTGGGTACTCAAAGTCTTCAGTGCTTCATTCACAACCAAAATCTACAGTAGGAACTCCGGCATACATTGCTCCCGAAGTATTACTGAGGCAAGAGTATGATGGAAAGACGGCAGATGTATGGTCATGTGGAGTAACTTTATATGTGATGTTGATGGGATCATATCCTTTTGAAGATCCTGATGAACCAAAGGATTTCCGGAAGACGATACAAAGAATTCTCAGTGTCCAGTATGCCATTCCAGATTCTGTGCCATTATCTCGTGAATGTCTTGAACTGATATCAAGAATTTTTGTGCCAGACCCTGCTGCGAGAATTACCATTCCTGAAATAAAGAACCACCCATGGTTCTTGAAGAATCTTCCCGCAGATTTGATGGATGAGATGACGATGGGCAACCATTTCGAAGAGCCTGATCAACCGATGCAGAGCATTGATACAATCATGCAAATAATTGCTGAGGCCACTATACCAGCAGTTGGAATCCACAATCTTAGCCCGTACCTGAATGACAATTTTGACATGGACGATGATATGGATGACTTAGATTCGGAATCTGAACTAGATGTTGATAGCAGTGGGGAAATAGTCTATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

243

Amino Acids

27.29

Weight (kDa)

4.34

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 160	5.1e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 156	4.6e-13	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50500 AT3G50500 AT5G66880 AT5G66880
fragaria_vesca	FvH4_1g15440 FvH4_1g15440 FvH4_1g15440 FvH4_1g15440
malus_domestica	MD02G1166500.v1.1 MD15G1279000.v1.1
prunus_persica	Prupe.7G138200_v2.0.a1 Prupe.7G138200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104671
rosa_laevigata	RLG00000017350
rosa_multiflora	Rmu_sc0002316.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138850
rosa_rugosa	Rorug02G0121700
rosa_samantha	Rh2BG179500 Rh2DG178300
rosa_wichuraiana	Rw2G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	608
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	1 cut(s)	495
AclWI	GGATC	2 cut(s)	295, 299
AcsI	RAATTY	2 cut(s)	345, 417
AcuI	CTGAAG	1 cut(s)	132
AfaI	GTAC	2 cut(s)	137, 632
AfiI	CCNNNNNNNGG	1 cut(s)	608
AgsI	TTSAA	4 cut(s)	73, 302, 404, 484
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
AlwI	GGATC	2 cut(s)	295, 299
AlwNI	CAGNNNCTG	2 cut(s)	377, 434
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	1 cut(s)	591
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	2 cut(s)	345, 417
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	534
BauI	CACGAG	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	138, 338
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	5 cut(s)	89, 224, 277, 499, 514
BceAI	ACGGC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	65
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	2 cut(s)	138, 338
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	608
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	3 cut(s)	100, 514, 673
BseLI	CCNNNNNNNGG	1 cut(s)	608
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	3 cut(s)	206, 364, 579
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	593
BsiSI	CCGG	3 cut(s)	64, 188, 328
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	593
Bsp119I	TTCGAA	1 cut(s)	534
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	287, 304, 544
Bsp19I	CCATGG	1 cut(s)	473
BspACI	CCGC	1 cut(s)	495
BspANI	GGCC	1 cut(s)	593
BspCNI	CTCAG	3 cut(s)	207, 363, 580
BspEI	TCCGGA	1 cut(s)	327
BspPI	GGATC	2 cut(s)	295, 299
BspQI	GCTCTTC	1 cut(s)	531
BspT104I	TTCGAA	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	3 cut(s)	287, 304, 544
BssSI	CACGAG	1 cut(s)	390
BssT1I	CCWWGG	1 cut(s)	473
Bst2BI	CACGAG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstBI	TTCGAA	1 cut(s)	534
BstDEI	CTNAG	5 cut(s)	215, 350, 588, 623, 673
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	100, 514, 673
BstKTI	GATC	3 cut(s)	290, 307, 547
BstMBI	GATC	3 cut(s)	287, 304, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	2 cut(s)	138, 338
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	593
BtgI	CCRYGG	1 cut(s)	473
BtsCI	GGATG	3 cut(s)	100, 514, 673
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	3 cut(s)	156, 358, 712
CaiI	CAGNNNCTG	2 cut(s)	377, 434
Csp6I	GTAC	2 cut(s)	136, 631
CviAII	CATG	4 cut(s)	255, 474, 574, 652
CviJI	RGCY	4 cut(s)	107, 541, 593, 627
CviKI_1	RGCY	4 cut(s)	107, 541, 593, 627
CviQI	GTAC	2 cut(s)	136, 631
DdeI	CTNAG	5 cut(s)	215, 350, 588, 623, 673
DpnI	GATC	3 cut(s)	289, 306, 546
DpnII	GATC	3 cut(s)	287, 304, 544
Eam1104I	CTCTTC	1 cut(s)	531
EarI	CTCTTC	1 cut(s)	531
Eco130I	CCWWGG	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	411
Eco57I	CTGAAG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	345
EcoRV	GATATC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	4 cut(s)	258, 477, 577, 655
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	4 cut(s)	254, 473, 573, 651
FauI	CCCGC	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	3 cut(s)	107, 521, 680
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	593
HapII	CCGG	3 cut(s)	64, 188, 328
Hin1II	CATG	4 cut(s)	258, 477, 577, 655
HinfI	GANTC	5 cut(s)	374, 487, 612, 677, 683
HpaII	CCGG	3 cut(s)	64, 188, 328
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	2 cut(s)	682, 688
Hpy188III	TCNNGA	9 cut(s)	203, 308, 328, 371, 392, 401, 414, 455, 481
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	556, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	5 cut(s)	215, 350, 588, 623, 673
Hsp92II	CATG	4 cut(s)	258, 477, 577, 655
Kpn2I	TCCGGA	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	287, 304, 544
LguI	GCTCTTC	1 cut(s)	531
LmnI	GCTCC	2 cut(s)	112, 205
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	543
MaeI	CTAG	1 cut(s)	692
MaeIII	GTNAC	2 cut(s)	59, 262
MalI	GATC	3 cut(s)	289, 306, 546
MboI	GATC	3 cut(s)	287, 304, 544
MboII	GAAGA	6 cut(s)	138, 314, 343, 482, 496, 548
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	6 cut(s)	6, 345, 417, 444, 582, 643
MmeI	TCCRAC	3 cut(s)	57, 72, 589
MnlI	CCTC	3 cut(s)	120, 210, 583
MroI	TCCGGA	1 cut(s)	327
MseI	TTAA	2 cut(s)	116, 730
MspI	CCGG	3 cut(s)	64, 188, 328
MspR9I	CCNGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	65
NcoI	CCATGG	1 cut(s)	473
NdeII	GATC	3 cut(s)	287, 304, 544
NlaIII	CATG	4 cut(s)	258, 477, 577, 655
NmuCI	GTSAC	1 cut(s)	59
NspV	TTCGAA	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	531
PfeI	GAWTC	5 cut(s)	374, 487, 612, 677, 683
PflMI	CCANNNNNTGG	1 cut(s)	608
PkrI	GCNGC	1 cut(s)	439
PstNI	CAGNNNCTG	2 cut(s)	377, 434
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	137, 632
RsaNI	GTAC	2 cut(s)	136, 631
SapI	GCTCTTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	116, 730
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	3 cut(s)	287, 304, 544
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	2 cut(s)	109, 636
SfaNI	GCATC	1 cut(s)	543
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	534
Sse9I	AATT	6 cut(s)	6, 345, 417, 444, 582, 643
SsiI	CCGC	1 cut(s)	495
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	534
TasI	AATT	6 cut(s)	6, 345, 417, 444, 582, 643
TfiI	GAWTC	5 cut(s)	374, 487, 612, 677, 683
Tru1I	TTAA	2 cut(s)	116, 730
Tru9I	TTAA	2 cut(s)	116, 730
TscAI	CASTG	3 cut(s)	156, 358, 712
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	62, 146, 327
TspRI	CASTG	3 cut(s)	156, 358, 712
Van91I	CCANNNNNTGG	1 cut(s)	608
XapI	RAATTY	2 cut(s)	345, 417
XspI	CTAG	1 cut(s)	692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.