Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

10483188 .. 10484925

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCAAGCCATGTTACTCGGTCGAGGGTGCAGCCACAGCTTCAGGAGCATCAATCAAGGGCTAGGTGGACAACACATCTTACTAAGATTCTTGCAAGCTTAATGGTTGATCAGGTACACCAAGGGAATAGAAAAAACAATTACTTTGGCAAGAAAGCATGGAAGTATATCTGCGATGAATTCTATAAGAGAACGGGTCTGAAATGGGACAAGGAACAACTGAAGAACCGATGTGCAGTTATGAAGAGGATGTATATTATAATCAAGTCACTTCTTGATCGTAGTGATTTCAGTTGGGATGAAGCCACAGGGACCATCACAGCCAGTGATGAAGTATGGGCTGAATACACGAAGGAACATGCTGATGCAGAGACTCTAAGAAGCAGTGGCTGCCCAATTTACAAAGAGCTATGCATAATATTTTCAGAACCAGCAACCAATGGGAATCATGATCATCCAGCTGAACACGAGGAAGGGACTACAAATTTTCATCAATTGGAGCCATTGTCCATCCCGCAAGAAGTACTGTCCTCATCGGAATCTGAGGAAGCAGATGATGCTGTAGATGATAAAGAAACAGTTCAACCTATTACTCCCAGCACTGCTGGCATCCGCAAAAGAGGGCGCAAGGGCATTGATGATGCCATTGCAGGAGCTATTTTAGAGATGGCAGCTGCATCAAAGCTGAGAACGGCTGCTATACAGCAACGAGATGCCAGATATACCATAGCTAATTGTATTAAAGCACTGGATGAGATGAAAGGCGTTGATGAGCAACTCTATTTTGCTGCTCTTGATCTGTTCAACAAGCCCACTGCAAGGGAGATGTTCTTGTCTCTCAAACACGACAAGCGCTTGATCTGGTTGCAGGGCAAGTGCAGAGCAGCTGGTCCTGTTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

300

Amino Acids

34.02

Weight (kDa)

6.8

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	22 - 116	2.2e-26	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AciI	CCGC	2 cut(s)	515, 613
AcsI	RAATTY	2 cut(s)	179, 484
AcuI	CTGAAG	2 cut(s)	26, 242
AfaI	GTAC	2 cut(s)	117, 525
AfeI	AGCGCT	1 cut(s)	854
AfiI	CCNNNNNNNGG	1 cut(s)	819
AgsI	TTSAA	2 cut(s)	584, 805
AluBI	AGCT	9 cut(s)	40, 99, 409, 461, 656, 674, 685, 731, 887
AluI	AGCT	9 cut(s)	40, 99, 409, 461, 656, 674, 685, 731, 887
Alw26I	GTCTC	2 cut(s)	365, 840
AlwNI	CAGNNNCTG	1 cut(s)	390
Aor51HI	AGCGCT	1 cut(s)	854
ApeKI	GCWGC	7 cut(s)	31, 390, 671, 674, 695, 788, 884
ApoI	RAATTY	2 cut(s)	179, 484
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	2 cut(s)	627, 855
AspS9I	GGNCC	2 cut(s)	312, 890
AvaII	GGWCC	2 cut(s)	312, 890
BauI	CACGAG	1 cut(s)	467
BbvI	GCAGC	7 cut(s)	43, 377, 661, 682, 683, 775, 896
BccI	CCATC	3 cut(s)	323, 518, 661
BceAI	ACGGC	1 cut(s)	708
BclI	TGATCA	2 cut(s)	109, 451
BcoDI	GTCTC	2 cut(s)	365, 840
BfaI	CTAG	2 cut(s)	63, 901
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	856
BisI	GCNGC	7 cut(s)	32, 391, 672, 675, 696, 789, 885
BlsI	GCNGC	7 cut(s)	33, 392, 673, 676, 697, 790, 886
BmcAI	AGTACT	1 cut(s)	525
Bme18I	GGWCC	2 cut(s)	312, 890
BmgT120I	GGNCC	2 cut(s)	312, 890
BmiI	GGNNCC	2 cut(s)	313, 501
BmsI	GCATC	7 cut(s)	58, 355, 547, 618, 631, 686, 703
BsaJI	CCNNGG	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	819
Bse1I	ACTGG	2 cut(s)	324, 753
Bse3DI	GCAATG	1 cut(s)	645
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	6 cut(s)	255, 304, 454, 510, 609, 757
BseLI	CCNNNNNNNGG	1 cut(s)	819
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	534, 677
BseNI	ACTGG	2 cut(s)	324, 753
BseXI	GCAGC	7 cut(s)	43, 377, 661, 682, 683, 775, 896
BseYI	CCCAGC	1 cut(s)	596
BsgI	GTGCAG	3 cut(s)	50, 255, 898
Bsh1285I	CGRYCG	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	23
BslFI	GGGAC	3 cut(s)	221, 325, 490
BslI	CCNNNNNNNGG	1 cut(s)	819
BsmAI	GTCTC	2 cut(s)	365, 840
BsmFI	GGGAC	3 cut(s)	221, 325, 490
Bsp143I	GATC	5 cut(s)	109, 277, 451, 796, 858
BspACI	CCGC	2 cut(s)	515, 613
BspCNI	CTCAG	2 cut(s)	535, 678
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	2 cut(s)	313, 501
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	324, 753
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	5 cut(s)	109, 277, 451, 796, 858
BssSI	CACGAG	1 cut(s)	467
BssT1I	CCWWGG	1 cut(s)	121
Bst2BI	CACGAG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	528, 580
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	2 cut(s)	390, 557
BstC8I	GCNNGC	3 cut(s)	7, 97, 607
BstDEI	CTNAG	4 cut(s)	84, 377, 543, 686
BstF5I	GGATG	6 cut(s)	255, 304, 454, 510, 609, 757
BstH2I	RGCGCY	1 cut(s)	856
BstHHI	GCGC	2 cut(s)	627, 855
BstKTI	GATC	5 cut(s)	112, 280, 454, 799, 861
BstMAI	GTCTC	2 cut(s)	365, 840
BstMBI	GATC	5 cut(s)	109, 277, 451, 796, 858
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 46, 390, 557, 606
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	7 cut(s)	43, 377, 661, 682, 683, 775, 896
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	6 cut(s)	255, 304, 454, 510, 609, 757
BtsI	GCAGTG	3 cut(s)	391, 600, 813
BtsIMutI	CAGTG	5 cut(s)	331, 391, 600, 746, 813
Cac8I	GCNNGC	3 cut(s)	7, 97, 607
CaiI	CAGNNNCTG	1 cut(s)	390
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	2 cut(s)	627, 855
Cfr13I	GGNCC	2 cut(s)	312, 890
Csp6I	GTAC	2 cut(s)	116, 524
CviAII	CATG	4 cut(s)	11, 159, 359, 449
CviQI	GTAC	2 cut(s)	116, 524
DdeI	CTNAG	4 cut(s)	84, 377, 543, 686
DpnI	GATC	5 cut(s)	111, 279, 453, 798, 860
DpnII	GATC	5 cut(s)	109, 277, 451, 796, 858
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	312, 890
Eco47III	AGCGCT	1 cut(s)	854
Eco57I	CTGAAG	2 cut(s)	26, 242
EcoRI	GAATTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	14, 162, 362, 452
FaqI	GGGAC	3 cut(s)	221, 325, 490
FatI	CATG	4 cut(s)	10, 158, 358, 448
FauI	CCCGC	1 cut(s)	522
FbaI	TGATCA	2 cut(s)	109, 451
Fnu4HI	GCNGC	7 cut(s)	32, 391, 672, 675, 696, 789, 885
FokI	GGATG	6 cut(s)	262, 311, 441, 497, 596, 764
Fsp4HI	GCNGC	7 cut(s)	32, 391, 672, 675, 696, 789, 885
FspBI	CTAG	2 cut(s)	63, 901
GlaI	GCGC	2 cut(s)	626, 854
GluI	GCNGC	7 cut(s)	32, 391, 672, 675, 696, 789, 885
GsaI	CCCAGC	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	856
HhaI	GCGC	2 cut(s)	627, 855
Hin1II	CATG	4 cut(s)	14, 162, 362, 452
Hin6I	GCGC	2 cut(s)	625, 853
HinP1I	GCGC	2 cut(s)	625, 853
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	4 cut(s)	88, 373, 445, 539
Hpy166II	GTNNAC	2 cut(s)	69, 118
Hpy188I	TCNGA	4 cut(s)	201, 427, 538, 544
Hpy188III	TCNNGA	4 cut(s)	44, 275, 449, 794
Hpy8I	GTNNAC	2 cut(s)	69, 118
HpyAV	CCTTC	2 cut(s)	346, 467
HpyCH4III	ACNGT	2 cut(s)	528, 580
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 46, 390, 557, 606
HpyF3I	CTNAG	4 cut(s)	84, 377, 543, 686
Hsp92II	CATG	4 cut(s)	14, 162, 362, 452
HspAI	GCGC	2 cut(s)	625, 853
Ksp22I	TGATCA	2 cut(s)	109, 451
Kzo9I	GATC	5 cut(s)	109, 277, 451, 796, 858
LmnI	GCTCC	3 cut(s)	46, 499, 653
Lsp1109I	GCAGC	7 cut(s)	43, 377, 661, 682, 683, 775, 896
LweI	GCATC	7 cut(s)	58, 355, 547, 618, 631, 686, 703
MaeI	CTAG	2 cut(s)	63, 901
MaeIII	GTNAC	2 cut(s)	13, 267
MalI	GATC	5 cut(s)	111, 279, 453, 798, 860
MboI	GATC	5 cut(s)	109, 277, 451, 796, 858
MboII	GAAGA	2 cut(s)	235, 256
MfeI	CAATTG	1 cut(s)	494
MluCI	AATT	6 cut(s)	139, 179, 396, 484, 494, 733
MlyI	GAGTC	1 cut(s)	367
MnlI	CCTC	6 cut(s)	18, 240, 463, 538, 541, 614
Mph1103I	ATGCAT	1 cut(s)	416
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	2 cut(s)	101, 741
MslI	CAYNNNNRTG	1 cut(s)	363
MspA1I	CMGCKG	3 cut(s)	461, 674, 887
MunI	CAATTG	1 cut(s)	494
MwoI	GCNNNNNNNGC	5 cut(s)	37, 46, 390, 557, 606
NdeII	GATC	5 cut(s)	109, 277, 451, 796, 858
NlaIII	CATG	4 cut(s)	14, 162, 362, 452
NlaIV	GGNNCC	2 cut(s)	313, 501
NmuCI	GTSAC	1 cut(s)	267
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	362
PagI	TCATGA	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	3 cut(s)	88, 445, 539
PkrI	GCNGC	7 cut(s)	33, 392, 673, 676, 697, 790, 886
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	260
PspFI	CCCAGC	1 cut(s)	596
PspN4I	GGNNCC	2 cut(s)	313, 501
PspPI	GGNCC	2 cut(s)	312, 890
PstNI	CAGNNNCTG	1 cut(s)	390
PvuII	CAGCTG	3 cut(s)	461, 674, 887
RsaI	GTAC	2 cut(s)	117, 525
RsaNI	GTAC	2 cut(s)	116, 524
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	2 cut(s)	101, 741
SatI	GCNGC	7 cut(s)	32, 391, 672, 675, 696, 789, 885
Sau3AI	GATC	5 cut(s)	109, 277, 451, 796, 858
Sau96I	GGNCC	2 cut(s)	312, 890
ScaI	AGTACT	1 cut(s)	525
SchI	GAGTC	1 cut(s)	367
SfaNI	GCATC	7 cut(s)	58, 355, 547, 618, 631, 686, 703
SfcI	CTRYAG	1 cut(s)	561
SinI	GGWCC	2 cut(s)	312, 890
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	6 cut(s)	139, 179, 396, 484, 494, 733
SsiI	CCGC	2 cut(s)	515, 613
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	2 cut(s)	63, 901
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	528, 580
TaqI	TCGA	1 cut(s)	23
TaqII	GACCGA	1 cut(s)	9
TasI	AATT	6 cut(s)	139, 179, 396, 484, 494, 733
TatI	WGTACW	1 cut(s)	523
TfiI	GAWTC	3 cut(s)	88, 445, 539
Tru1I	TTAA	2 cut(s)	101, 741
Tru9I	TTAA	2 cut(s)	101, 741
TscAI	CASTG	5 cut(s)	331, 391, 607, 753, 820
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	7 cut(s)	31, 390, 671, 674, 695, 788, 884
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	6 cut(s)	192, 257, 315, 345, 479, 773
TspRI	CASTG	5 cut(s)	331, 391, 607, 753, 820
VpaK11BI	GGWCC	2 cut(s)	312, 890
XapI	RAATTY	2 cut(s)	179, 484
XceI	RCATGY	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	2 cut(s)	63, 901
ZrmI	AGTACT	1 cut(s)	525
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.