Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

10476961 .. 10481598

Gene Structure 4638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1836 bp

ATGGGGAAGAGGAGCTCTCTGGTAGTCTTGTCATCGGACGACGAAGAGACCGATCGTTCTCTGAGCTCAAATCGTGGCCGTACAAGGTCGTCGTCGGCGTCGAGATTGATCTCGTCGGCTCCGGCGAAGAACCCCGGGCGAGCGAAGAAGGCTCGGGTTTCGGGCTCTCGCTCTAGCTTGGGCTCAGTGTCCACTAATTGGGATGAGGTCAGATTGTCCTTTGGAGATTTTGATGAAGTGTTCAGTGGTGGTTCCAAGGTAGCTGCTGGTTCTGGAAGGAGCAATGTGAAGGAGTTATGGGTTGAGAAATACAAACCCCATTCGCTTGAGGAGCTTGCTGTTCACAAGAAAAAGGTCCAAGAAGTTAAGGGGTGGTTTGAAGAACGATTGACAGATTCAAAGGGTAAATCTAGTAATCACGCTCTTGTCATCACTGGGCAAGCTGGAGTTGGAAAATCTGCAACTATTCATGTGATTGCATCTCAGCTTGCTGCTACATTGTGTGAATGGAACACGCCAACTCCAATAGTTTGGCAAGAACATTTATATAACTCTAGTACAGGAGTACAATACATGTCAAAGTTGGAGGAATTTGAAAATTTTGTGGAGAGAGTACGGAAGTACGGTTTGATTCCATCATCCCTTAGTGAGGGTTCAAAATCATCAATCATACTCTTAATTGACGACCTTCCAGTGACAAATGGTAAAGTTGCTTTTCAAAGACTTCAAAACTGTTTGCGCCTTCTTGTGCAATCAACTCGTACACCAACTGCTATTTTGATCACCGACCATGGTAAAGCTGATTCAGAAGATCACACTGCTGGATACTTGGATGAACTTCAGTTGTCTCTTCAAAGTGCCGGGGCTTGTAAGGTCTCCTTCAATCCTATAACATCTAATTCCATAAAAAAAGTACTGTCTAGAATATGTAAAGAAGAGCAGTGTAATGTGACTGCTGAACAGGTTGATCTAATTGCAAAAGCAAGTGGAGGTGACATAAGAAATGCAATTACATCTTTACAGTTCTTCTTTCTGAAACCAACTCCGATGCATTCGCTTCCTTCATCGATTACTCCTCCCAGGTATGCTAAAGGGAAACAAGCACCCTGTTCTGCTAAAGGGAAATCAGATATGGTAAATGCTTTGGACAATAGTGGTTCCTTACAATTTGGAAGAGATGATACACTTTCTCTATTCCATGCCCTTGGGAAGTTTCTGCATAACAAAAGAGAAACTGAAGATAGCATGGAATTGGATGGAGCTGCATTTCATGTGCGAGAAGGTTTGTCTAGACTACCACTGAAAATGGATGCTCCGGAAAAGATTCTCTGTCAAGCACACGGACAAGCCAGGCCTATTGCTGATTTTCTACATGAAAATGTTCTAGATTTCGTGAGTGAGGAGGCAATGGATGATGCCTGGTCGGTTGCTTCATATTTAAGTGATGCTGATTTGCTTCTTGCTACTTTCCGCGGAATGCTAAGTAGACAGTATGAGGCAGAGAATGTTCTACAGTCAGCCGGTGCTTCAGTTGCCGTTCGTGGTGTGCTATTTGGAAATTTTCATCCATTGCCGTCCAGGTGGCATGCTGTTCGCCGGCCCAAGCTCTGGCAGGTTGAGAAGTCATCATTTTACAACAAGAAGGAGATGGTAAATCGGAGATTCGGTGATTATAGTGGTACTTGTTCATCTGATTTGACGGTTATAGCTACTGAGTACTCGCCTGTGTATAAATGGCTTGGATTTAGGGCACAGGGAGGTCTTGAAGACAATGTTGAAAGGATGAGTTTGGGTGATCAAGAAAGTGAAATTGATGACGATATAGAAGAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

611

Amino Acids

67.37

Weight (kDa)

6.59

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	97 - 264	1e-24	Rad17 P-loop domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1603
AccB7I	CCANNNNNTGG	2 cut(s)	198, 1608
AccI	GTMKAC	1 cut(s)	1486
AccII	CGCG	1 cut(s)	1473
AccIII	TCCGGA	1 cut(s)	1315
AciI	CCGC	2 cut(s)	1471, 1473
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	3 cut(s)	590, 598, 1558
AcuI	CTGAAG	3 cut(s)	824, 1257, 1512
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	9 cut(s)	82, 559, 567, 615, 623, 763, 915, 1681, 1718
AfiI	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
AflIII	ACRYGT	1 cut(s)	573
AjnI	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
Alw21I	GWGCWC	2 cut(s)	17, 68
Alw26I	GTCTC	3 cut(s)	41, 852, 880
Ama87I	CYCGRG	2 cut(s)	134, 153
Aor13HI	TCCGGA	1 cut(s)	1315
AoxI	GGCC	3 cut(s)	76, 1352, 1598
ApeKI	GCWGC	3 cut(s)	263, 491, 1262
ApoI	RAATTY	3 cut(s)	590, 598, 1558
Asp700I	GAANNNNTTC	2 cut(s)	1323, 1380
AspLEI	GCGC	1 cut(s)	741
AspS9I	GGNCC	2 cut(s)	355, 1599
AsuC2I	CCSGG	3 cut(s)	135, 136, 862
AsuHPI	GGTGA	4 cut(s)	775, 1004, 1679, 1805
AvaI	CYCGRG	2 cut(s)	134, 153
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	1753
BanII	GRGCYC	4 cut(s)	17, 68, 167, 185
BarI	GAAGNNNNNNTAC	2 cut(s)	1165, 1197
BbsI	GAAGAC	1 cut(s)	1773
Bbv12I	GWGCWC	2 cut(s)	17, 68
BbvI	GCAGC	3 cut(s)	250, 478, 1249
BccI	CCATC	3 cut(s)	643, 1250, 1642
BceAI	ACGGC	3 cut(s)	63, 1520, 1558
BcgI	CGANNNNNNTGC	4 cut(s)	740, 774, 1574, 1608
BciT130I	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
BciVI	GTATCC	1 cut(s)	818
BclI	TGATCA	2 cut(s)	780, 1795
BcnI	CCSGG	3 cut(s)	135, 136, 862
BcoDI	GTCTC	3 cut(s)	41, 852, 880
BfaI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
BfmI	CTRYAG	1 cut(s)	1511
BfuAI	ACCTGC	1 cut(s)	1603
BfuI	GTATCC	1 cut(s)	818
BisI	GCNGC	3 cut(s)	264, 492, 1263
BlsI	GCNGC	3 cut(s)	265, 493, 1264
BmcAI	AGTACT	2 cut(s)	915, 1718
Bme1390I	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	2 cut(s)	134, 153
BmgT120I	GGNCC	2 cut(s)	355, 1599
BmiI	GGNNCC	3 cut(s)	120, 253, 1159
BmrFI	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	5 cut(s)	488, 1038, 1300, 1405, 1435
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	1773
BplI	GAGNNNNNCTC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	3 cut(s)	135, 136, 862
Bsa29I	ATCGAT	1 cut(s)	1067
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	41, 880
BsaJI	CCNNGG	8 cut(s)	133, 134, 255, 790, 861, 1079, 1204, 1471
BsaWI	WCCGGW	1 cut(s)	1315
BsaXI	ACNNNNNCTCC	4 cut(s)	505, 535, 1651, 1681
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
Bse118I	RCCGGY	2 cut(s)	1520, 1596
Bse1I	ACTGG	2 cut(s)	439, 692
Bse3DI	GCAATG	3 cut(s)	289, 1413, 1568
BseAI	TCCGGA	1 cut(s)	1315
BseBI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
BseCI	ATCGAT	1 cut(s)	1067
BseDI	CCNNGG	8 cut(s)	133, 134, 255, 790, 861, 1079, 1204, 1471
BseGI	GGATG	8 cut(s)	208, 638, 838, 1261, 1315, 1417, 1564, 1788
BseLI	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
BseMI	GCAATG	3 cut(s)	289, 1413, 1568
BseMII	CTCAG	4 cut(s)	53, 198, 497, 1704
BseNI	ACTGG	2 cut(s)	439, 692
BseRI	GAGGAG	4 cut(s)	25, 344, 1065, 1415
BseSI	GKGCMC	1 cut(s)	1753
BseXI	GCAGC	3 cut(s)	250, 478, 1249
Bsh1236I	CGCG	1 cut(s)	1473
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	78, 1354, 1600
BshVI	ATCGAT	1 cut(s)	1067
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	2 cut(s)	17, 68
BsiHKCI	CYCGRG	2 cut(s)	134, 153
BsiSI	CCGG	6 cut(s)	122, 135, 861, 1316, 1521, 1597
BslI	CCNNNNNNNGG	3 cut(s)	198, 649, 1608
BsmAI	GTCTC	3 cut(s)	41, 852, 880
BsmI	GAATGC	2 cut(s)	1051, 1482
BsnI	GGCC	3 cut(s)	78, 1354, 1600
Bso31I	GGTCTC	2 cut(s)	41, 880
BsoBI	CYCGRG	2 cut(s)	134, 153
Bsp1286I	GDGCHC	5 cut(s)	17, 68, 167, 185, 1753
Bsp13I	TCCGGA	1 cut(s)	1315
Bsp143I	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
Bsp19I	CCATGG	1 cut(s)	790
BspACI	CCGC	2 cut(s)	1471, 1473
BspANI	GGCC	3 cut(s)	78, 1354, 1600
BspCNI	CTCAG	4 cut(s)	54, 197, 496, 1705
BspDI	ATCGAT	1 cut(s)	1067
BspEI	TCCGGA	1 cut(s)	1315
BspFNI	CGCG	1 cut(s)	1473
BspLI	GGNNCC	3 cut(s)	120, 253, 1159
BspMI	ACCTGC	1 cut(s)	1603
BspQI	GCTCTTC	1 cut(s)	930
BspTNI	GGTCTC	2 cut(s)	41, 880
BsrDI	GCAATG	3 cut(s)	289, 1413, 1568
BsrFI	RCCGGY	2 cut(s)	1520, 1596
BsrI	ACTGG	2 cut(s)	439, 692
BssAI	RCCGGY	2 cut(s)	1520, 1596
BssECI	CCNNGG	8 cut(s)	133, 134, 255, 790, 861, 1079, 1204, 1471
BssMI	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	3 cut(s)	255, 790, 1204
Bst2UI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
Bst4CI	ACNGT	7 cut(s)	626, 734, 918, 1023, 1491, 1515, 1702
Bst6I	CTCTTC	5 cut(s)	2, 39, 855, 930, 1168
BstACI	GRCGYC	1 cut(s)	98
BstC8I	GCNNGC	6 cut(s)	141, 336, 441, 489, 1587, 1598
BstDEI	CTNAG	6 cut(s)	62, 184, 483, 644, 1481, 1713
BstDSI	CCRYGG	2 cut(s)	790, 1471
BstENI	CCTNNNNNAGG	1 cut(s)	647
BstF5I	GGATG	8 cut(s)	208, 638, 838, 1261, 1315, 1417, 1564, 1788
BstFNI	CGCG	1 cut(s)	1473
BstHHI	GCGC	1 cut(s)	741
BstKTI	GATC	6 cut(s)	55, 111, 783, 814, 970, 1798
BstMAI	GTCTC	3 cut(s)	41, 852, 880
BstMBI	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 331, 1532
BstNI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
BstNSI	RCATGY	2 cut(s)	577, 1589
BstSCI	CCNGG	7 cut(s)	133, 134, 860, 1079, 1349, 1418, 1577
BstSFI	CTRYAG	1 cut(s)	1511
BstSLI	GKGCMC	1 cut(s)	1753
BstUI	CGCG	1 cut(s)	1473
BstV1I	GCAGC	3 cut(s)	250, 478, 1249
BstV2I	GAAGAC	1 cut(s)	1773
BstXI	CCANNNNNNTGG	2 cut(s)	531, 1205
Bsu15I	ATCGAT	1 cut(s)	1067
BsuI	GTATCC	1 cut(s)	818
BsuRI	GGCC	3 cut(s)	78, 1354, 1600
BsuTUI	ATCGAT	1 cut(s)	1067
BtgI	CCRYGG	2 cut(s)	790, 1471
BtsCI	GGATG	8 cut(s)	208, 638, 838, 1261, 1315, 1417, 1564, 1788
BtsI	GCAGTG	2 cut(s)	816, 947
BtsIMutI	CAGTG	7 cut(s)	192, 250, 432, 699, 816, 947, 1298
BveI	ACCTGC	1 cut(s)	1603
Cac8I	GCNNGC	6 cut(s)	141, 336, 441, 489, 1587, 1598
CfoI	GCGC	1 cut(s)	741
Cfr10I	RCCGGY	2 cut(s)	1520, 1596
Cfr13I	GGNCC	2 cut(s)	355, 1599
Cfr42I	CCGCGG	1 cut(s)	1474
Cfr9I	CCCGGG	1 cut(s)	134
ClaI	ATCGAT	1 cut(s)	1067
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	9 cut(s)	81, 558, 566, 614, 622, 762, 914, 1680, 1717
CviAII	CATG	8 cut(s)	470, 574, 791, 1199, 1246, 1271, 1373, 1586
CviQI	GTAC	9 cut(s)	81, 558, 566, 614, 622, 762, 914, 1680, 1717
DdeI	CTNAG	6 cut(s)	62, 184, 483, 644, 1481, 1713
DpnI	GATC	6 cut(s)	54, 110, 782, 813, 969, 1797
DpnII	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
EaeI	YGGCCR	1 cut(s)	76
Eam1104I	CTCTTC	5 cut(s)	2, 39, 855, 930, 1168
EarI	CTCTTC	5 cut(s)	2, 39, 855, 930, 1168
Ecl136II	GAGCTC	2 cut(s)	15, 66
Eco130I	CCWWGG	3 cut(s)	255, 790, 1204
Eco147I	AGGCCT	1 cut(s)	1354
Eco24I	GRGCYC	4 cut(s)	17, 68, 167, 185
Eco31I	GGTCTC	2 cut(s)	41, 880
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	2 cut(s)	15, 66
Eco57I	CTGAAG	3 cut(s)	824, 1257, 1512
Eco88I	CYCGRG	2 cut(s)	134, 153
EcoICRI	GAGCTC	2 cut(s)	15, 66
EcoNI	CCTNNNNNAGG	1 cut(s)	647
EcoRII	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
EcoT14I	CCWWGG	3 cut(s)	255, 790, 1204
EcoT22I	ATGCAT	1 cut(s)	1053
EcoT38I	GRGCYC	4 cut(s)	17, 68, 167, 185
ErhI	CCWWGG	3 cut(s)	255, 790, 1204
FaeI	CATG	8 cut(s)	473, 577, 794, 1202, 1249, 1274, 1376, 1589
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FatI	CATG	8 cut(s)	469, 573, 790, 1198, 1245, 1270, 1372, 1585
FbaI	TGATCA	2 cut(s)	780, 1795
FblI	GTMKAC	1 cut(s)	1486
Fnu4HI	GCNGC	3 cut(s)	264, 492, 1263
FokI	GGATG	8 cut(s)	215, 625, 845, 1268, 1322, 1424, 1551, 1795
FriOI	GRGCYC	4 cut(s)	17, 68, 167, 185
Fsp4HI	GCNGC	3 cut(s)	264, 492, 1263
FspBI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
GlaI	GCGC	1 cut(s)	740
GluI	GCNGC	3 cut(s)	264, 492, 1263
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	78, 1354, 1600
HapII	CCGG	6 cut(s)	122, 135, 861, 1316, 1521, 1597
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	741
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	8 cut(s)	473, 577, 794, 1202, 1249, 1274, 1376, 1589
Hin6I	GCGC	1 cut(s)	739
HinP1I	GCGC	1 cut(s)	739
HinfI	GANTC	5 cut(s)	395, 631, 803, 1324, 1662
HpaII	CCGG	6 cut(s)	122, 135, 861, 1316, 1521, 1597
HphI	GGTGA	4 cut(s)	775, 1004, 1679, 1805
Hpy166II	GTNNAC	4 cut(s)	192, 343, 764, 1487
Hpy188I	TCNGA	9 cut(s)	37, 63, 212, 808, 1035, 1047, 1129, 1659, 1693
Hpy188III	TCNNGA	9 cut(s)	102, 273, 921, 1290, 1316, 1385, 1393, 1763, 1799
Hpy8I	GTNNAC	4 cut(s)	192, 343, 764, 1487
Hpy99I	CGWCG	5 cut(s)	44, 94, 97, 103, 118
HpyAV	CCTTC	9 cut(s)	142, 270, 283, 698, 752, 889, 1071, 1274, 1636
HpyCH4III	ACNGT	7 cut(s)	626, 734, 918, 1023, 1491, 1515, 1702
HpyCH4V	TGCA	8 cut(s)	461, 479, 751, 977, 1007, 1051, 1219, 1265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 331, 1532
HpyF3I	CTNAG	6 cut(s)	62, 184, 483, 644, 1481, 1713
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	8 cut(s)	473, 577, 794, 1202, 1249, 1274, 1376, 1589
HspAI	GCGC	1 cut(s)	739
Kpn2I	TCCGGA	1 cut(s)	1315
KroI	GCCGGC	1 cut(s)	1596
KroNI	GCCGGC	1 cut(s)	1598
Ksp22I	TGATCA	2 cut(s)	780, 1795
KspI	CCGCGG	1 cut(s)	1474
Kzo9I	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	6 cut(s)	12, 124, 279, 331, 1259, 1318
Lsp1109I	GCAGC	3 cut(s)	250, 478, 1249
LweI	GCATC	5 cut(s)	488, 1038, 1300, 1405, 1435
MaeI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
MaeIII	GTNAC	3 cut(s)	694, 949, 992
MalI	GATC	6 cut(s)	54, 110, 782, 813, 969, 1797
MboI	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
MhlI	GDGCHC	5 cut(s)	17, 68, 167, 185, 1753
MmeI	TCCRAC	2 cut(s)	430, 564
Mph1103I	ATGCAT	1 cut(s)	1053
MroI	TCCGGA	1 cut(s)	1315
MroNI	GCCGGC	1 cut(s)	1596
MroXI	GAANNNNTTC	2 cut(s)	1323, 1380
MseI	TTAA	3 cut(s)	366, 677, 1439
MslI	CAYNNNNRTG	1 cut(s)	1377
MspA1I	CMGCKG	1 cut(s)	1473
MspI	CCGG	6 cut(s)	122, 135, 861, 1316, 1521, 1597
MspR9I	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
Mva1269I	GAATGC	2 cut(s)	1051, 1482
MvaI	CCWGG	4 cut(s)	1081, 1351, 1420, 1579
MvnI	CGCG	1 cut(s)	1473
MwoI	GCNNNNNNNGC	3 cut(s)	149, 331, 1532
NaeI	GCCGGC	1 cut(s)	1598
NciI	CCSGG	3 cut(s)	135, 136, 862
NcoI	CCATGG	1 cut(s)	790
NdeII	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
NgoMIV	GCCGGC	1 cut(s)	1596
NlaIII	CATG	8 cut(s)	473, 577, 794, 1202, 1249, 1274, 1376, 1589
NlaIV	GGNNCC	3 cut(s)	120, 253, 1159
NmuCI	GTSAC	3 cut(s)	694, 949, 992
NsiI	ATGCAT	1 cut(s)	1053
NspI	RCATGY	2 cut(s)	577, 1589
PaeI	GCATGC	1 cut(s)	1589
PceI	AGGCCT	1 cut(s)	1354
PciI	ACATGT	1 cut(s)	573
PciSI	GCTCTTC	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 95, 98, 122
PctI	GAATGC	2 cut(s)	1051, 1482
PdiI	GCCGGC	1 cut(s)	1598
PdmI	GAANNNNTTC	2 cut(s)	1323, 1380
PfeI	GAWTC	5 cut(s)	395, 631, 803, 1324, 1662
PflMI	CCANNNNNTGG	2 cut(s)	198, 1608
PkrI	GCNGC	3 cut(s)	265, 493, 1264
Ple19I	CGATCG	1 cut(s)	55
PscI	ACATGT	1 cut(s)	573
Psp124BI	GAGCTC	2 cut(s)	17, 68
Psp6I	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
PspGI	CCWGG	4 cut(s)	1079, 1349, 1418, 1577
PspN4I	GGNNCC	3 cut(s)	120, 253, 1159
PspPI	GGNCC	2 cut(s)	355, 1599
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	9 cut(s)	82, 559, 567, 615, 623, 763, 915, 1681, 1718
RsaNI	GTAC	9 cut(s)	81, 558, 566, 614, 622, 762, 914, 1680, 1717
RseI	CAYNNNNRTG	1 cut(s)	1377
SacI	GAGCTC	2 cut(s)	17, 68
SacII	CCGCGG	1 cut(s)	1474
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	366, 677, 1439
SatI	GCNGC	3 cut(s)	264, 492, 1263
Sau3AI	GATC	6 cut(s)	52, 108, 780, 811, 967, 1795
Sau96I	GGNCC	2 cut(s)	355, 1599
ScaI	AGTACT	2 cut(s)	915, 1718
ScrFI	CCNGG	7 cut(s)	135, 136, 862, 1081, 1351, 1420, 1579
SduI	GDGCHC	5 cut(s)	17, 68, 167, 185, 1753
SfaNI	GCATC	5 cut(s)	488, 1038, 1300, 1405, 1435
SfcI	CTRYAG	1 cut(s)	1511
Sfr303I	CCGCGG	1 cut(s)	1474
SgrBI	CCGCGG	1 cut(s)	1474
SinI	GGWCC	1 cut(s)	355
SmaI	CCCGGG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	1377
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SphI	GCATGC	1 cut(s)	1589
SseBI	AGGCCT	1 cut(s)	1354
SsiI	CCGC	2 cut(s)	1471, 1473
SspMI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
SstI	GAGCTC	2 cut(s)	17, 68
StuI	AGGCCT	1 cut(s)	1354
StyD4I	CCNGG	7 cut(s)	133, 134, 860, 1079, 1349, 1418, 1577
StyI	CCWWGG	3 cut(s)	255, 790, 1204
TaaI	ACNGT	7 cut(s)	626, 734, 918, 1023, 1491, 1515, 1702
TaqI	TCGA	2 cut(s)	101, 1067
TaqII	GACCGA	1 cut(s)	65
TatI	WGTACW	4 cut(s)	557, 565, 913, 1716
TfiI	GAWTC	5 cut(s)	395, 631, 803, 1324, 1662
Tru1I	TTAA	3 cut(s)	366, 677, 1439
Tru9I	TTAA	3 cut(s)	366, 677, 1439
TscAI	CASTG	7 cut(s)	192, 250, 439, 699, 823, 947, 1305
TseFI	GTSAC	3 cut(s)	694, 949, 992
TseI	GCWGC	3 cut(s)	263, 491, 1262
Tsp45I	GTSAC	3 cut(s)	694, 949, 992
TspDTI	ATGAA	9 cut(s)	249, 458, 849, 1053, 1259, 1389, 1422, 1553, 1677
TspGWI	ACGGA	2 cut(s)	631, 1356
TspMI	CCCGGG	1 cut(s)	134
TspRI	CASTG	7 cut(s)	192, 250, 439, 699, 823, 947, 1305
Van91I	CCANNNNNTGG	2 cut(s)	198, 1608
VpaK11BI	GGWCC	1 cut(s)	355
XagI	CCTNNNNNAGG	1 cut(s)	647
XapI	RAATTY	3 cut(s)	590, 598, 1558
XbaI	TCTAGA	3 cut(s)	920, 1289, 1384
XceI	RCATGY	2 cut(s)	577, 1589
XmaI	CCCGGG	1 cut(s)	134
XmiI	GTMKAC	1 cut(s)	1486
XmnI	GAANNNNTTC	2 cut(s)	1323, 1380
XspI	CTAG	6 cut(s)	174, 411, 555, 921, 1290, 1385
ZrmI	AGTACT	2 cut(s)	915, 1718
Zsp2I	ATGCAT	1 cut(s)	1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.