Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Reverse (-)

77082222 .. 77086461

Gene Structure 4240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTTATAGTAGGGGAGTTCGTAGGAGGTGCTGCTCTTGGAGCAGCATTTGGGGTATTGTTTGATGTTGTGAATGAAGCAGTTGACAAGCCTACTGCCTTGAAATCCCTCCTTGAGAATATCAAATTTTCGCTACACTTTCTGAAACCAGTGATTGAAAAGATAGGAGAGCATAATGTGGTATTGGGTCTCCCAGATGAAGAAATAAAGTATCTTATAACAGAAATGGAGGAGGGTGTAAAGCTCGTCCGCAAGTCATCAAAGGTTAGTAAGTGGAACTGCATGAAGTTTTACTACACGGATCAACTTATTGAAGTGGACGGGTCTCTCAAAAGACTGATAGAAATACTGAAGGTACAAGGAGTAAGGGATGCAAAGGAGACCTTGATTTTGGCAACAGAAAACCATGACCAACTTATTGACTCGGCAAGAGATACAAAGGCGACCTTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

16.8

Weight (kDa)

5.43

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 138	9.9e-28	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	1 cut(s)	309
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	371
AfaI	GTAC	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	103, 158, 314
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
Alw26I	GTCTC	3 cut(s)	194, 330, 374
AlwI	GGATC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	32, 44
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbvI	GCAGC	2 cut(s)	19, 56
BcoDI	GTCTC	3 cut(s)	194, 330, 374
BisI	GCNGC	2 cut(s)	33, 45
BlsI	GCNGC	2 cut(s)	34, 46
BmsI	GCATC	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	134
BsaI	GGTCTC	3 cut(s)	194, 330, 374
BsaJI	CCNNGG	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	19, 56
BsmAI	GTCTC	3 cut(s)	194, 330, 374
Bso31I	GGTCTC	3 cut(s)	194, 330, 374
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	1 cut(s)	250
BspPI	GGATC	1 cut(s)	309
BspTNI	GGTCTC	3 cut(s)	194, 330, 374
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	3 cut(s)	194, 330, 374
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	19, 56
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	283, 407
CviJI	RGCY	2 cut(s)	91, 244
CviKI_1	RGCY	2 cut(s)	91, 244
CviQI	GTAC	1 cut(s)	356
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	447
Eco31I	GGTCTC	3 cut(s)	194, 330, 374
Eco57I	CTGAAG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	2 cut(s)	286, 410
FaiI	YATR	5 cut(s)	8, 174, 218, 284, 408
FalI	AAGNNNNNCTT	3 cut(s)	368, 400, 431
FatI	CATG	2 cut(s)	282, 406
Fnu4HI	GCNGC	2 cut(s)	33, 45
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	33, 45
GluI	GCNGC	2 cut(s)	33, 45
Hin1II	CATG	2 cut(s)	286, 410
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	422
Hpy166II	GTNNAC	2 cut(s)	85, 319
Hpy188I	TCNGA	1 cut(s)	144
Hpy8I	GTNNAC	2 cut(s)	85, 319
HpyAV	CCTTC	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	282, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	286, 410
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	2 cut(s)	162, 207
Lsp1109I	GCAGC	2 cut(s)	19, 56
LweI	GCATC	1 cut(s)	361
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	1 cut(s)	212
MluCI	AATT	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	416
MnlI	CCTC	4 cut(s)	20, 119, 223, 226
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	2 cut(s)	286, 410
NmeAIII	GCCGAG	1 cut(s)	404
PkrI	GCNGC	2 cut(s)	34, 46
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	218
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SatI	GCNGC	2 cut(s)	33, 45
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	416
SetI	ASST	6 cut(s)	31, 246, 267, 357, 386, 449
SfaNI	GCATC	1 cut(s)	361
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	1 cut(s)	125
SsiI	CCGC	1 cut(s)	250
StyI	CCWWGG	1 cut(s)	447
TasI	AATT	1 cut(s)	125
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	2 cut(s)	32, 44
TspDTI	ATGAA	3 cut(s)	90, 213, 299
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	1 cut(s)	156
XapI	RAATTY	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.