Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Reverse (-)

77149270 .. 77150451

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGATTATAGTAGGGGAGTTTGTAGGGGGTGCTGTTTTTGGAGCAGCATTTGGGGTGTTGTTTGTTGTCGTCAAGAAAGCATTTGACAAGCCTACTGCCTTTAAATCCCTCCTTGAGAACATCAAGTTTTCTCTGGAGTTTCTAAAGCCGGTGATTGAGAAGATAGGAGAGCATAACGTGGAATTGGATCTCCCAGATGAAGAAATAAAGCATCTTATAACAGAAATGAAAGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAAGTCAGTAAGTGGAACTGCATGAAGTCTTATTACACGGATCAACTTATTGAATTCGATGGTGCTCTTAAAAGACTGTTCCAAATATTGATGGTACAAGGAGTAAGGGATGCGAAGGAGACCTTGATTTTGGCCAGAAAACACCAAGACCAACTTATTGAAACGGCAAAAGATGCAAAGGAGACACTAGTTTTGGCACAAAAGGACACTAGCCAGCTTACTGAATCGGTAAAGGATGGGAAGGAGACCATAGAATTGGCAAGAAAAAATGCTGACCAATCGGCAAAGAAGGGGAAGGAGACCTTGGTTTTGGCTAGGAAAACTAGAAGGTTGCTTAAGCGAATTGAACGACTGGTGACTTGCACTTCCAAAGGTGACTTGGTCAATGCTACTGAGAATTTCAAGTCTAGTGAGGGAGACTTTGCGGGGACTTTCAAGGGTTGGGTGGATGAGAATACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGAGATTGAACCCAGAAAGTGTCGAAGACTTTAAACAGTGGCAGTTACGTAGTATTACTGCTTTCAACTCTGGTACATTGTCGAACATTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

286

Amino Acids

31.96

Weight (kDa)

9.08

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 136	1.4e-27	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AciI	CCGC	1 cut(s)	686
AclWI	GGATC	2 cut(s)	195, 309
AcoI	YGGCCR	2 cut(s)	393, 750
AcsI	RAATTY	2 cut(s)	314, 658
AfaI	GTAC	2 cut(s)	357, 838
AflII	CTTAAG	1 cut(s)	596
AgsI	TTSAA	7 cut(s)	314, 422, 608, 664, 697, 772, 829
AhlI	ACTAGT	1 cut(s)	448
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	2 cut(s)	244, 478
AluI	AGCT	2 cut(s)	244, 478
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	5 cut(s)	374, 437, 500, 554, 672
AlwI	GGATC	2 cut(s)	195, 309
AoxI	GGCC	2 cut(s)	393, 750
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	314, 658
ArsI	GACNNNNNNTTYG	6 cut(s)	373, 405, 436, 468, 553, 585
AsuHPI	GGTGA	3 cut(s)	163, 628, 647
BalI	TGGCCA	1 cut(s)	395
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	3 cut(s)	314, 346, 491
BceAI	ACGGC	2 cut(s)	441, 737
BcoDI	GTCTC	5 cut(s)	374, 437, 500, 554, 672
BcuI	ACTAGT	1 cut(s)	448
BfaI	CTAG	5 cut(s)	449, 471, 576, 585, 669
BfrI	CTTAAG	1 cut(s)	596
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
BmsI	GCATC	3 cut(s)	220, 361, 424
BpiI	GAAGAC	1 cut(s)	795
BpmI	CTGGAG	1 cut(s)	155
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	812
BsaI	GGTCTC	3 cut(s)	374, 500, 554
BsaJI	CCNNGG	1 cut(s)	564
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	618, 748
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	3 cut(s)	376, 502, 715
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	2 cut(s)	618, 748
BseXI	GCAGC	1 cut(s)	56
BshFI	GGCC	2 cut(s)	395, 752
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	703
BsmAI	GTCTC	5 cut(s)	374, 437, 500, 554, 672
BsmFI	GGGAC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	395, 752
Bso31I	GGTCTC	3 cut(s)	374, 500, 554
Bsp1286I	GDGCHC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	187, 301
BspACI	CCGC	1 cut(s)	686
BspANI	GGCC	2 cut(s)	395, 752
BspCNI	CTCAG	1 cut(s)	646
BspPI	GGATC	2 cut(s)	195, 309
BspTI	CTTAAG	1 cut(s)	596
BspTNI	GGTCTC	3 cut(s)	374, 500, 554
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	618, 748
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	2 cut(s)	187, 301
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	339, 801
BstAFI	CTTAAG	1 cut(s)	596
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstBAI	YACGTR	1 cut(s)	812
BstC8I	GCNNGC	2 cut(s)	476, 723
BstDEI	CTNAG	2 cut(s)	654, 732
BstF5I	GGATG	3 cut(s)	376, 502, 715
BstKTI	GATC	2 cut(s)	190, 304
BstMAI	GTCTC	5 cut(s)	374, 437, 500, 554, 672
BstMBI	GATC	2 cut(s)	187, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstSNI	TACGTA	1 cut(s)	812
BstV1I	GCAGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	395, 752
BtsCI	GGATG	3 cut(s)	376, 502, 715
BtsIMutI	CAGTG	2 cut(s)	741, 806
Cac8I	GCNNGC	2 cut(s)	476, 723
Cfr10I	RCCGGY	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	356, 837
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	8 cut(s)	91, 148, 244, 395, 474, 478, 575, 752
CviKI_1	RGCY	8 cut(s)	91, 148, 244, 395, 474, 478, 575, 752
CviQI	GTAC	2 cut(s)	356, 837
DdeI	CTNAG	2 cut(s)	654, 732
DpnI	GATC	2 cut(s)	189, 303
DpnII	GATC	2 cut(s)	187, 301
DraI	TTTAAA	2 cut(s)	103, 796
EaeI	YGGCCR	2 cut(s)	393, 750
Eco105I	TACGTA	1 cut(s)	812
Eco130I	CCWWGG	1 cut(s)	564
Eco31I	GGTCTC	3 cut(s)	374, 500, 554
EcoRI	GAATTC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	1 cut(s)	286
FaiI	YATR	5 cut(s)	8, 174, 218, 284, 512
FalI	AAGNNNNNCTT	6 cut(s)	368, 400, 399, 431, 548, 580
FaqI	GGGAC	1 cut(s)	703
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	679
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	3 cut(s)	383, 509, 722
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	5 cut(s)	449, 471, 576, 585, 669
GluI	GCNGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	395, 752
HapII	CCGG	1 cut(s)	149
Hin1II	CATG	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	485
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	3 cut(s)	163, 628, 647
Hpy188III	TCNNGA	4 cut(s)	73, 134, 250, 763
HpyAV	CCTTC	6 cut(s)	370, 496, 544, 550, 582, 738
HpyCH4III	ACNGT	2 cut(s)	339, 801
HpyCH4IV	ACGT	2 cut(s)	177, 811
HpyCH4V	TGCA	4 cut(s)	282, 437, 624, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
HpyF3I	CTNAG	2 cut(s)	654, 732
HpySE526I	ACGT	2 cut(s)	177, 811
Hsp92II	CATG	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	187, 301
LmnI	GCTCC	1 cut(s)	41
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	3 cut(s)	220, 361, 424
MaeI	CTAG	5 cut(s)	449, 471, 576, 585, 669
MaeII	ACGT	2 cut(s)	177, 811
MaeIII	GTNAC	3 cut(s)	616, 635, 807
MalI	GATC	2 cut(s)	189, 303
MboI	GATC	2 cut(s)	187, 301
MboII	GAAGA	3 cut(s)	172, 212, 800
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	328
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	5 cut(s)	182, 314, 515, 603, 658
MluNI	TGGCCA	1 cut(s)	395
MnlI	CCTC	3 cut(s)	119, 226, 667
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	4 cut(s)	102, 330, 597, 795
MslI	CAYNNNNRTG	1 cut(s)	746
Msp20I	TGGCCA	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	596
MspI	CCGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	434
NdeII	GATC	2 cut(s)	187, 301
NlaIII	CATG	1 cut(s)	286
NmuCI	GTSAC	2 cut(s)	616, 635
PfeI	GAWTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	641
PkrI	GCNGC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	812
PsiI	TTATAA	1 cut(s)	218
PsuI	RGATCY	1 cut(s)	187
PsyI	GACNNNGTC	1 cut(s)	641
RsaI	GTAC	2 cut(s)	357, 838
RsaNI	GTAC	2 cut(s)	356, 837
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	4 cut(s)	102, 330, 597, 795
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	187, 301
SduI	GDGCHC	1 cut(s)	328
SfaNI	GCATC	3 cut(s)	220, 361, 424
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	2 cut(s)	113, 596
SmoI	CTYRAG	2 cut(s)	113, 596
SnaBI	TACGTA	1 cut(s)	812
SpeI	ACTAGT	1 cut(s)	448
Sse9I	AATT	5 cut(s)	182, 314, 515, 603, 658
SsiI	CCGC	1 cut(s)	686
SspI	AATATT	1 cut(s)	348
SspMI	CTAG	5 cut(s)	449, 471, 576, 585, 669
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	339, 801
TaiI	ACGT	2 cut(s)	180, 814
TaqI	TCGA	3 cut(s)	318, 786, 845
TasI	AATT	5 cut(s)	182, 314, 515, 603, 658
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	4 cut(s)	102, 330, 597, 795
Tru9I	TTAA	4 cut(s)	102, 330, 597, 795
TscAI	CASTG	2 cut(s)	748, 806
TseFI	GTSAC	2 cut(s)	616, 635
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	2 cut(s)	616, 635
TspDTI	ATGAA	3 cut(s)	213, 242, 299
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	748, 806
Tth111I	GACNNNGTC	1 cut(s)	641
Vha464I	CTTAAG	1 cut(s)	596
XapI	RAATTY	2 cut(s)	314, 658
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XspI	CTAG	5 cut(s)	449, 471, 576, 585, 669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.