Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

8667029 .. 8668493

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGTTATAGTAGGGGAGTTTGTAGGTGGCGCTGCTCTTGGAGCAGCAATTGGGGTGTTGTTTGATGCTGTTAATAAAGCAGTAGACAAGTCTACTGCCTTCAAATCCCTACTTGAGAACATTAAGTTTTCTCTGGAAATTCTAAAGCCGGTGATCGAAAAGATAGGAGATCATAATCTAGAATTGGGACTCCCAGATGAAGAAATAGAGTATATTTTAACAGAAATGATGGTGGGCGCGAAGCTTGTTCAGAGGGCTTCAAAGGTCAGTAAGTGGAACTGCATAAAGTCTTATTACACGGATCAACTTATTGAATTGGATGCTTCTGTTGAAAGACTGCTCCATATATTGATCATACAAGGAGTAAAGGATGCGAAGGAGATCTTGATATTGGCAAGAAAACACCAAGACCAACTTATTACAACAGCGAAAGACGCAAAGGAGACACTTGTTATGGCACAACAGAACACTAGCCAGCTTACTGAATCGGTAAAGGATGGAAAGAAGACCTTAGAATTGGCAACAAAGTACGCTGAACAATCAGCAAGAGATCGCAAGGAGACCTTGGTTTTGGCTAGGAAAATCAAAAGGTTGCTTAAACGAATGGTGTCTTGTACTAACAAAGGAAAAACCAGATACAGCAGGAACAAAATTCCAAAAGCGAGCAGAAGGTCAGGTATAGAGACATCCGATTTGAGAGTTTTCTGGCTTGCAGAGTTGCAGGCTGCTACTGAGAATTTCAGAGGCAAAACGTTTGGTGGGATCAATGGGATGACGTATGAGGGTTGGTTGCATGAGAAGACACTTTCACCGTCTAAGTATGGCACCGGAATGATGGTGGTTATCCAGAGATATCCGAAGAGTTCAACAAGAGAGTGGACGGTGCCGTCATTGCCATATGTGATTGTTATGCTATCATCAGTATCATGCGAACTTCCTAGTATGTCTCTCTCTCATCCCAACTTTGTCAAGCTATTAGGCTACTGCTGCAAGGAGAGGGAGATGTGGTTGGTTTATGAGTTTGTGCAGCGAGGAAGCTTGCATGATAATCTTTTTGAAAGTATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

357

Amino Acids

40.14

Weight (kDa)

9.19

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 135	1e-23	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	886
AccB1I	GGYRCC	2 cut(s)	824, 883
AccI	GTMKAC	2 cut(s)	84, 92
AccII	CGCG	1 cut(s)	239
AclI	AACGTT	1 cut(s)	752
AclWI	GGATC	2 cut(s)	309, 770
AcsI	RAATTY	3 cut(s)	138, 651, 736
AfaI	GTAC	2 cut(s)	530, 616
AgsI	TTSAA	6 cut(s)	103, 261, 314, 332, 867, 1058
AluBI	AGCT	4 cut(s)	244, 478, 973, 1038
AluI	AGCT	4 cut(s)	244, 478, 973, 1038
Alw26I	GTCTC	4 cut(s)	437, 554, 677, 951
AlwI	GGATC	2 cut(s)	309, 770
ApeKI	GCWGC	5 cut(s)	32, 44, 725, 987, 1027
ApoI	RAATTY	3 cut(s)	138, 651, 736
ArsI	GACNNNNNNTTYG	4 cut(s)	553, 585, 676, 708
AspLEI	GCGC	2 cut(s)	32, 239
AsuHPI	GGTGA	2 cut(s)	163, 801
BanI	GGYRCC	2 cut(s)	824, 883
BbsI	GAAGAC	2 cut(s)	512, 806
BbvI	GCAGC	5 cut(s)	19, 56, 712, 974, 1039
BccI	CCATC	3 cut(s)	223, 491, 829
BceAI	ACGGC	1 cut(s)	871
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	4 cut(s)	437, 554, 677, 951
BfaI	CTAG	4 cut(s)	179, 471, 576, 939
BfoI	RGCGCY	1 cut(s)	33
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	5 cut(s)	33, 45, 726, 988, 1028
BlsI	GCNGC	5 cut(s)	34, 46, 727, 989, 1029
BmiI	GGNNCC	2 cut(s)	826, 885
BmsI	GCATC	3 cut(s)	55, 310, 361
BpiI	GAAGAC	2 cut(s)	512, 806
BpuEI	CTTGAG	1 cut(s)	134
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	827
BsaXI	ACNNNNNCTCC	2 cut(s)	992, 1022
Bse118I	RCCGGY	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	890
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	6 cut(s)	325, 376, 502, 686, 777, 955
BseJI	GATNNNNATC	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	890
BseMII	CTCAG	1 cut(s)	723
BseXI	GCAGC	5 cut(s)	19, 56, 712, 974, 1039
BsgI	GTGCAG	1 cut(s)	1046
Bsh1236I	CGCG	1 cut(s)	239
BshNI	GGYRCC	2 cut(s)	824, 883
BsiSI	CCGG	2 cut(s)	149, 828
BslFI	GGGAC	1 cut(s)	201
BsmAI	GTCTC	4 cut(s)	437, 554, 677, 951
BsmFI	GGGAC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	554
Bsp143I	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
BspCNI	CTCAG	1 cut(s)	724
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	1067
BspLI	GGNNCC	2 cut(s)	826, 885
BspPI	GGATC	2 cut(s)	309, 770
BspT107I	GGYRCC	2 cut(s)	824, 883
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	890
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
BssT1I	CCWWGG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	813, 883
Bst6I	CTCTTC	1 cut(s)	854
BstC8I	GCNNGC	5 cut(s)	476, 664, 711, 723, 1040
BstDEI	CTNAG	3 cut(s)	511, 732, 816
BstF5I	GGATG	6 cut(s)	325, 376, 502, 686, 777, 955
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	32, 239
BstKTI	GATC	7 cut(s)	156, 172, 304, 354, 384, 553, 765
BstMAI	GTCTC	4 cut(s)	437, 554, 677, 951
BstMBI	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 434, 892, 987
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	5 cut(s)	19, 56, 712, 974, 1039
BstV2I	GAAGAC	2 cut(s)	512, 806
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BtsCI	GGATG	6 cut(s)	325, 376, 502, 686, 777, 955
Cac8I	GCNNGC	5 cut(s)	476, 664, 711, 723, 1040
CciI	TCATGA	1 cut(s)	1067
CfoI	GCGC	2 cut(s)	32, 239
Cfr10I	RCCGGY	1 cut(s)	148
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	529, 615
CviAII	CATG	4 cut(s)	794, 927, 1043, 1068
CviQI	GTAC	2 cut(s)	529, 615
DdeI	CTNAG	3 cut(s)	511, 732, 816
DpnI	GATC	7 cut(s)	155, 171, 303, 353, 383, 552, 764
DpnII	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
DrdI	GACNNNNNNGTC	1 cut(s)	886
DseDI	GACNNNNNNGTC	1 cut(s)	886
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Eco130I	CCWWGG	1 cut(s)	564
Eco31I	GGTCTC	1 cut(s)	554
Eco32I	GATATC	1 cut(s)	854
EcoRV	GATATC	1 cut(s)	854
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	4 cut(s)	797, 930, 1046, 1071
FalI	AAGNNNNNCTT	8 cut(s)	368, 400, 399, 431, 494, 526, 548, 580
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	4 cut(s)	793, 926, 1042, 1067
FauNDI	CATATG	1 cut(s)	898
FbaI	TGATCA	1 cut(s)	351
FblI	GTMKAC	2 cut(s)	84, 92
Fnu4HI	GCNGC	5 cut(s)	33, 45, 726, 988, 1028
FokI	GGATG	6 cut(s)	332, 383, 509, 673, 784, 942
Fsp4HI	GCNGC	5 cut(s)	33, 45, 726, 988, 1028
FspBI	CTAG	4 cut(s)	179, 471, 576, 939
GlaI	GCGC	2 cut(s)	31, 238
GluI	GCNGC	5 cut(s)	33, 45, 726, 988, 1028
HaeII	RGCGCY	1 cut(s)	33
HapII	CCGG	2 cut(s)	149, 828
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	2 cut(s)	32, 239
Hin1II	CATG	4 cut(s)	797, 930, 1046, 1071
Hin6I	GCGC	2 cut(s)	30, 237
HinP1I	GCGC	2 cut(s)	30, 237
HindIII	AAGCTT	2 cut(s)	242, 1036
HinfI	GANTC	2 cut(s)	189, 485
HpaII	CCGG	2 cut(s)	149, 828
HphI	GGTGA	2 cut(s)	163, 801
Hpy166II	GTNNAC	3 cut(s)	85, 93, 879
Hpy188I	TCNGA	4 cut(s)	252, 691, 743, 858
Hpy188III	TCNNGA	5 cut(s)	134, 179, 385, 847, 1068
Hpy8I	GTNNAC	3 cut(s)	85, 93, 879
HpyAV	CCTTC	3 cut(s)	109, 370, 663
HpyCH4III	ACNGT	2 cut(s)	813, 883
HpyCH4IV	ACGT	2 cut(s)	752, 776
HpyCH4V	TGCA	7 cut(s)	282, 713, 721, 793, 990, 1027, 1042
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 434, 892, 987
HpyF3I	CTNAG	3 cut(s)	511, 732, 816
HpySE526I	ACGT	2 cut(s)	752, 776
Hsp92II	CATG	4 cut(s)	797, 930, 1046, 1071
HspAI	GCGC	2 cut(s)	30, 237
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
LmnI	GCTCC	2 cut(s)	41, 345
Lsp1109I	GCAGC	5 cut(s)	19, 56, 712, 974, 1039
LweI	GCATC	3 cut(s)	55, 310, 361
MaeI	CTAG	4 cut(s)	179, 471, 576, 939
MaeII	ACGT	2 cut(s)	752, 776
MalI	GATC	7 cut(s)	155, 171, 303, 353, 383, 552, 764
MboI	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
MboII	GAAGA	4 cut(s)	212, 517, 811, 871
MfeI	CAATTG	1 cut(s)	48
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	7 cut(s)	48, 138, 182, 314, 515, 651, 736
MlyI	GAGTC	1 cut(s)	183
MnlI	CCTC	5 cut(s)	246, 737, 775, 990, 1025
MseI	TTAA	4 cut(s)	72, 123, 218, 597
MslI	CAYNNNNRTG	1 cut(s)	830
MspI	CCGG	2 cut(s)	149, 828
MunI	CAATTG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	4 cut(s)	41, 434, 892, 987
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
NlaIII	CATG	4 cut(s)	797, 930, 1046, 1071
NlaIV	GGNNCC	2 cut(s)	826, 885
PagI	TCATGA	1 cut(s)	1067
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	5 cut(s)	34, 46, 727, 989, 1029
PleI	GAGTC	1 cut(s)	183
PpsI	GAGTC	1 cut(s)	183
Psp1406I	AACGTT	1 cut(s)	752
PspN4I	GGNNCC	2 cut(s)	826, 885
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	2 cut(s)	530, 616
RsaNI	GTAC	2 cut(s)	529, 615
RseI	CAYNNNNRTG	1 cut(s)	830
SaqAI	TTAA	4 cut(s)	72, 123, 218, 597
SatI	GCNGC	5 cut(s)	33, 45, 726, 988, 1028
Sau3AI	GATC	7 cut(s)	153, 169, 301, 351, 381, 550, 762
SchI	GAGTC	1 cut(s)	183
SfaNI	GCATC	3 cut(s)	55, 310, 361
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	7 cut(s)	48, 138, 182, 314, 515, 651, 736
SspMI	CTAG	4 cut(s)	179, 471, 576, 939
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	813, 883
TaiI	ACGT	2 cut(s)	755, 779
TaqI	TCGA	1 cut(s)	156
TasI	AATT	7 cut(s)	48, 138, 182, 314, 515, 651, 736
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	4 cut(s)	72, 123, 218, 597
Tru9I	TTAA	4 cut(s)	72, 123, 218, 597
TseI	GCWGC	5 cut(s)	32, 44, 725, 987, 1027
TspDTI	ATGAA	1 cut(s)	213
TspGWI	ACGGA	1 cut(s)	314
XapI	RAATTY	3 cut(s)	138, 651, 736
XbaI	TCTAGA	1 cut(s)	178
XmiI	GTMKAC	2 cut(s)	84, 92
XspI	CTAG	4 cut(s)	179, 471, 576, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.