Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

15949048 .. 15953024

Gene Structure 3977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGAAGGAGACCTTGGATTTGGCAAAACAAAACAATGACCAGCTTGTTGAATCCGCAAGAGATGGGAAGGAGACCTTGGTTTTGGCCAAGGAAATTAAAAGGTTGCTCAAACGAATTAAACATCTGGCGCCTTGTACGGAAATTCAGATATCACAGTGGGAAGAGAGGTTCAAAAGTGAGCAGAACTGCAGGAAGAAGTCGAACATTGGAGACATTCAACTTAAGAGTTTTCCGTTTTGCAGAATTAAAGGCTGCTACTGGGAATTTCAGGCTTGATGCCATTCTTCGTAAAGGTGGCTTTGGGACGGTTTTCAAAGGTTGGGTGGATGAGACGACACTTACACCTTCTAAGCTGGTTGGCACTGGAATGGCTATTGCTGTCAAGAGATTGAACACAGAAAGTATCCAAGGCGTTGAACAGTGGGAGTTGGGGATGAACTTCCTAGGGCTTTCTCACCCCAACCTTGTCAAGCTTTTGGGATATTGTAGTGAGAAAAAGGAGAAGCTCTTTGTTTACGAGTTCATGCCAAATGGAAGCTTACATGATCATCTTTTCAGGAGGATCCCTGATGAGGAACCATTATCTTGGGACAACAGACTCAAGATAGCTACTGGAGCTGCTCAGGGCTTAGCTTTCTTGCACAGTTTTCAAATCATAGACAGAGATGTCAAACCCTCTAATATACTGCTTGATGAAGTACTATTTTTTCTACTTTTCTTTCCTTTCTCTCTCTCATTTAGTTTAATGCTCTGTTTTGTTCATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

256

Amino Acids

29.66

Weight (kDa)

10.17

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	92 - 233	2.4e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	120 - 233	1.5e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	668
AccB1I	GGYRCC	1 cut(s)	129
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	2 cut(s)	559, 572
AcoI	YGGCCR	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	143, 265
AcyI	GRCGYC	1 cut(s)	130
AfaI	GTAC	2 cut(s)	138, 702
AfiI	CCNNNNNNNGG	1 cut(s)	574
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	7 cut(s)	52, 174, 220, 316, 394, 419, 653
AjuI	GAANNNNNNNTTGG	3 cut(s)	30, 61, 93
AloI	GAACNNNNNNTCC	2 cut(s)	154, 186
AluBI	AGCT	8 cut(s)	45, 355, 475, 508, 540, 611, 620, 635
AluI	AGCT	8 cut(s)	45, 355, 475, 508, 540, 611, 620, 635
Alw26I	GTCTC	4 cut(s)	4, 67, 206, 326
AlwI	GGATC	2 cut(s)	559, 572
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	2 cut(s)	254, 620
ApoI	RAATTY	2 cut(s)	143, 265
ArsI	GACNNNNNNTTYG	3 cut(s)	35, 66, 98
AspA2I	CCTAGG	1 cut(s)	445
AspLEI	GCGC	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	449
AvrII	CCTAGG	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	88
BamHI	GGATCC	1 cut(s)	564
BanI	GGYRCC	1 cut(s)	129
BbvI	GCAGC	2 cut(s)	241, 607
BccI	CCATC	1 cut(s)	58
BciVI	GTATCC	1 cut(s)	416
BclI	TGATCA	1 cut(s)	547
BcoDI	GTCTC	4 cut(s)	4, 67, 206, 326
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	133
BfrI	CTTAAG	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	2 cut(s)	255, 621
BlnI	CCTAGG	1 cut(s)	445
BlpI	GCTNAGC	1 cut(s)	631
BlsI	GCNGC	2 cut(s)	256, 622
BmcAI	AGTACT	1 cut(s)	702
BmiI	GGNNCC	3 cut(s)	131, 566, 579
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	631
BpuEI	CTTGAG	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	130
BsaI	GGTCTC	2 cut(s)	4, 67
BsaJI	CCNNGG	5 cut(s)	14, 77, 89, 409, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	265, 370, 619
BseDI	CCNNGG	5 cut(s)	14, 77, 89, 409, 445
BseGI	GGATG	2 cut(s)	334, 441
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	3 cut(s)	265, 370, 619
BseXI	GCAGC	2 cut(s)	241, 607
BshFI	GGCC	1 cut(s)	88
BshNI	GGYRCC	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	319, 605
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	4 cut(s)	4, 67, 206, 326
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	319, 605
BsnI	GGCC	1 cut(s)	88
Bso31I	GGTCTC	2 cut(s)	4, 67
Bsp143I	GATC	2 cut(s)	547, 564
Bsp1720I	GCTNAGC	1 cut(s)	631
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	637
BspLI	GGNNCC	3 cut(s)	131, 566, 579
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	559, 572
BspT107I	GGYRCC	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	223
BspTNI	GGTCTC	2 cut(s)	4, 67
BsrI	ACTGG	3 cut(s)	265, 370, 619
BssECI	CCNNGG	5 cut(s)	14, 77, 89, 409, 445
BssMI	GATC	2 cut(s)	547, 564
BssNI	GRCGYC	1 cut(s)	130
BssT1I	CCWWGG	5 cut(s)	14, 77, 89, 409, 445
Bst4CI	ACNGT	4 cut(s)	158, 310, 423, 647
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	130
BstAFI	CTTAAG	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	351, 624, 631
BstF5I	GGATG	2 cut(s)	334, 441
BstH2I	RGCGCY	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	550, 567
BstMAI	GTCTC	4 cut(s)	4, 67, 206, 326
BstMBI	GATC	2 cut(s)	547, 564
BstMWI	GCNNNNNNNGC	1 cut(s)	617
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	241, 607
BstX2I	RGATCY	1 cut(s)	564
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	564
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	334, 441
BtsIMutI	CAGTG	3 cut(s)	163, 363, 428
CfoI	GCGC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	137, 701
CviAII	CATG	2 cut(s)	526, 545
CviQI	GTAC	2 cut(s)	137, 701
DdeI	CTNAG	3 cut(s)	351, 624, 631
DinI	GGCGCC	1 cut(s)	131
DpnI	GATC	2 cut(s)	549, 566
DpnII	GATC	2 cut(s)	547, 564
DrdI	GACNNNNNNGTC	1 cut(s)	668
DseDI	GACNNNNNNGTC	1 cut(s)	668
EaeI	YGGCCR	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	5 cut(s)	14, 77, 89, 409, 445
Eco31I	GGTCTC	2 cut(s)	4, 67
Eco32I	GATATC	1 cut(s)	152
EcoRV	GATATC	1 cut(s)	152
EcoT14I	CCWWGG	5 cut(s)	14, 77, 89, 409, 445
EgeI	GGCGCC	1 cut(s)	131
EheI	GGCGCC	1 cut(s)	131
ErhI	CCWWGG	5 cut(s)	14, 77, 89, 409, 445
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	2 cut(s)	529, 548
FaiI	YATR	4 cut(s)	527, 546, 659, 686
FalI	AAGNNNNNCTT	3 cut(s)	30, 61, 93
FaqI	GGGAC	2 cut(s)	319, 605
FatI	CATG	2 cut(s)	525, 544
FbaI	TGATCA	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	255, 621
FokI	GGATG	2 cut(s)	341, 448
Fsp4HI	GCNGC	2 cut(s)	255, 621
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	255, 621
GsuI	CTGGAG	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	88
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	529, 548
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	473, 538
HinfI	GANTC	2 cut(s)	52, 600
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	2 cut(s)	149, 770
Hpy188III	TCNNGA	3 cut(s)	385, 559, 604
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	2 cut(s)	63, 357
HpyCH4III	ACNGT	4 cut(s)	158, 310, 423, 647
HpyCH4V	TGCA	3 cut(s)	191, 242, 643
HpyF10VI	GCNNNNNNNGC	1 cut(s)	617
HpyF3I	CTNAG	3 cut(s)	351, 624, 631
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	2 cut(s)	529, 548
HspAI	GCGC	1 cut(s)	130
KasI	GGCGCC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	2 cut(s)	547, 564
LmnI	GCTCC	1 cut(s)	617
Lsp1109I	GCAGC	2 cut(s)	241, 607
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	446
MalI	GATC	2 cut(s)	549, 566
MboI	GATC	2 cut(s)	547, 564
MboII	GAAGA	3 cut(s)	175, 207, 278
MflI	RGATCY	1 cut(s)	564
MlsI	TGGCCA	1 cut(s)	88
MluCI	AATT	5 cut(s)	95, 116, 143, 245, 265
MluNI	TGGCCA	1 cut(s)	88
Mly113I	GGCGCC	1 cut(s)	130
MlyI	GAGTC	1 cut(s)	594
MnlI	CCTC	4 cut(s)	161, 555, 568, 688
Mox20I	TGGCCA	1 cut(s)	88
MscI	TGGCCA	1 cut(s)	88
MseI	TTAA	5 cut(s)	98, 119, 224, 248, 746
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	88
MspCI	CTTAAG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	617
NarI	GGCGCC	1 cut(s)	130
NdeII	GATC	2 cut(s)	547, 564
NlaIII	CATG	2 cut(s)	529, 548
NlaIV	GGNNCC	3 cut(s)	131, 566, 579
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	256, 622
PleI	GAGTC	1 cut(s)	594
PluTI	GGCGCC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	594
PspN4I	GGNNCC	3 cut(s)	131, 566, 579
PstI	CTGCAG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	564
RsaI	GTAC	2 cut(s)	138, 702
RsaNI	GTAC	2 cut(s)	137, 701
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	5 cut(s)	98, 119, 224, 248, 746
SatI	GCNGC	2 cut(s)	255, 621
Sau3AI	GATC	2 cut(s)	547, 564
ScaI	AGTACT	1 cut(s)	702
SchI	GAGTC	1 cut(s)	594
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	189
SfoI	GGCGCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	223, 602
SmoI	CTYRAG	2 cut(s)	223, 602
Sse9I	AATT	5 cut(s)	95, 116, 143, 245, 265
SsiI	CCGC	1 cut(s)	56
SspDI	GGCGCC	1 cut(s)	129
SspMI	CTAG	1 cut(s)	446
StyI	CCWWGG	5 cut(s)	14, 77, 89, 409, 445
TaaI	ACNGT	4 cut(s)	158, 310, 423, 647
TaqI	TCGA	1 cut(s)	202
TasI	AATT	5 cut(s)	95, 116, 143, 245, 265
TatI	WGTACW	1 cut(s)	700
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	5 cut(s)	98, 119, 224, 248, 746
Tru9I	TTAA	5 cut(s)	98, 119, 224, 248, 746
TscAI	CASTG	3 cut(s)	163, 370, 428
TseI	GCWGC	2 cut(s)	254, 620
TspDTI	ATGAA	4 cut(s)	452, 514, 711, 752
TspGWI	ACGGA	2 cut(s)	154, 224
TspRI	CASTG	3 cut(s)	163, 370, 428
Vha464I	CTTAAG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	143, 265
XmaJI	CCTAGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	446
ZrmI	AGTACT	1 cut(s)	702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.