Rmu_sc0002316.1_g000045
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
Physical Location & Seq
Reverse (-)
206181 .. 209948
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000045.1.cds

Sequence Viewer

Length: 1290 bp
atgattatagtaggggagtttgtagggggtgctgttgtcgtcaagaaagcagttgacaagcctactgcctttaaatccctccttgagaacatcaagttttctctggagtttctaaagccggtgattgagaagataggagagcataacgtggaattgggtctcccagatgaagaaataaagcatcttataacagaaatgaaggagggcgtaaagcttgtccagaagtcatcaaaagtcagtaagtcgaactgcatgaagtcttattacacggatcaacttattgaattggatggtgctcttaaaagactgttccatatattgatggtacaaggagtaagggatgcgaaggagatcttgattttggccagaaaacaccaagaccaacttattgaaacggcaaaagatgcaaaggagacacttgctttggcacaaaagaacactagccagcttactgaatcggtaaaggatgggaacgagaccatagaattggcaagaaaaaacgctgaccaatcggcaaaaaaggagaaagagaccttggtcacggctcacaatgggaacaaaattcccaaagcgagcagaagggtagagagaattcgagttttggaggcatccaacttaatagtctaccgttttgccgagttggtcaatgctactgagaatttcaagtctagtgagggagactttgcggggactttcaagggttgggtggatgagaatacgcttgcaccttctaaggttggcactggaatggccgttgctgtcaagagattgaacccagaaagtgtggaagactttaaacagtggcaggttcgtagtattactgctttcaactctgggactgacctgctgcatcaaaccaaggtgtccatccgtccagatcacagtcgctactcagctgcctggatcgacttcgcgtccgaaaacccagctgcccagatcgacttcgtgtccgacgacgccgtcgtttcccagatcgaccaaccagccagcgaacctctccagatctccagtttccggctctgcttcagtcagtttggcccgaacgctggtcgctcagtccataccagtttgcggtgtcactcagttcgcgcaacccgacccgtcccgtgcttccgtcgcccggatcaccagcccgtcgtcctagccgactgcttttgttcaccgtacatccgagaacgacccagtccggtcgtctattcgatccttcagtctctggcttcctctattcaatcctccagtctccggcttcgttcagttccctttgattaccagcaacaagtcaacccgtaa

Protein Analysis

429

Amino Acids

47.85

Weight (kDa)

8.72

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AasI GACNNNNNNGTC 1 cut(s) 959
Acc36I ACCTGC 2 cut(s) 796, 852
AccI GTMKAC 1 cut(s) 624
AccII CGCG 2 cut(s) 914, 1089
AciI CCGC 2 cut(s) 686, 1072
AclWI GGATC 4 cut(s) 279, 911, 1131, 1195
AcoI YGGCCR 2 cut(s) 363, 750
AcsI RAATTY 3 cut(s) 561, 591, 658
AcuI CTGAAG 2 cut(s) 1009, 1190
AcyI GRCGYC 1 cut(s) 957
AfaI GTAC 2 cut(s) 327, 1166
AfiI CCNNNNNNNGG 5 cut(s) 1014, 1046, 1071, 1120, 1242
AgsI TTSAA 7 cut(s) 284, 392, 664, 697, 772, 829, 1229
AhdI GACNNNNNGTC 2 cut(s) 913, 946
AjnI CCWGG 1 cut(s) 899
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 4 cut(s) 214, 448, 896, 929
AluI AGCT 4 cut(s) 214, 448, 896, 929
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 7 cut(s) 164, 407, 470, 524, 672, 1215, 1244
AlwI GGATC 4 cut(s) 279, 911, 1131, 1195
AlwNI CAGNNNCTG 1 cut(s) 1213
AoxI GGCC 3 cut(s) 363, 750, 1036
ApeKI GCWGC 3 cut(s) 847, 896, 929
ApoI RAATTY 3 cut(s) 561, 591, 658
ArsI GACNNNNNNTTYG 2 cut(s) 406, 438
AspLEI GCGC 1 cut(s) 1091
AspS9I GGNCC 1 cut(s) 1037
AsuC2I CCSGG 1 cut(s) 1121
AsuHPI GGTGA 3 cut(s) 133, 1118, 1152
BalI TGGCCA 1 cut(s) 365
BarI GAAGNNNNNNTAC 2 cut(s) 248, 280
BbsI GAAGAC 1 cut(s) 795
Bbv12I GWGCWC 1 cut(s) 298
BbvI GCAGC 3 cut(s) 834, 883, 916
BccI CCATC 4 cut(s) 284, 316, 461, 875
BceAI ACGGC 4 cut(s) 411, 558, 737, 944
BciT130I CCWGG 1 cut(s) 901
BcnI CCSGG 1 cut(s) 1121
BcoDI GTCTC 7 cut(s) 164, 407, 470, 524, 672, 1215, 1244
BfaI CTAG 3 cut(s) 441, 669, 1142
BfuAI ACCTGC 2 cut(s) 796, 852
BglII AGATCT 2 cut(s) 351, 1002
BisI GCNGC 3 cut(s) 848, 897, 930
BlsI GCNGC 3 cut(s) 849, 898, 931
Bme1390I CCNGG 2 cut(s) 901, 1121
BmeRI GACNNNNNGTC 2 cut(s) 913, 946
BmgT120I GGNCC 1 cut(s) 1037
BmrFI CCNGG 2 cut(s) 901, 1121
BmrI ACTGGG 1 cut(s) 1176
BmsI GCATC 5 cut(s) 190, 331, 394, 617, 859
BmuI ACTGGG 1 cut(s) 1176
BoxI GACNNNNGTC 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 795
BpmI CTGGAG 4 cut(s) 125, 983, 991, 1219
BpuEI CTTGAG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 1121
BsaHI GRCGYC 1 cut(s) 957
BsaI GGTCTC 3 cut(s) 164, 470, 524
BsaJI CCNNGG 2 cut(s) 534, 858
BsaWI WCCGGW 1 cut(s) 1186
Bsc4I CCNNNNNNNGG 5 cut(s) 1014, 1046, 1071, 1120, 1242
Bse118I RCCGGY 1 cut(s) 118
Bse1I ACTGG 5 cut(s) 748, 1008, 1065, 1182, 1236
BseBI CCWGG 1 cut(s) 901
BseDI CCNNGG 2 cut(s) 534, 858
BseGI GGATG 7 cut(s) 295, 346, 472, 608, 715, 867, 1167
BseLI CCNNNNNNNGG 5 cut(s) 1014, 1046, 1071, 1120, 1242
BseMII CTCAG 4 cut(s) 645, 906, 1068, 1095
BseNI ACTGG 5 cut(s) 748, 1008, 1065, 1182, 1236
BseXI GCAGC 3 cut(s) 834, 883, 916
BseYI CCCAGC 1 cut(s) 925
Bsh1236I CGCG 2 cut(s) 914, 1089
Bsh1285I CGRYCG 1 cut(s) 1191
BshFI GGCC 3 cut(s) 365, 752, 1038
BsiEI CGRYCG 1 cut(s) 1191
BsiHKAI GWGCWC 1 cut(s) 298
BsiSI CCGG 5 cut(s) 119, 1015, 1121, 1187, 1243
BslFI GGGAC 3 cut(s) 703, 850, 1088
BslI CCNNNNNNNGG 5 cut(s) 1014, 1046, 1071, 1120, 1242
BsmAI GTCTC 7 cut(s) 164, 407, 470, 524, 672, 1215, 1244
BsmFI GGGAC 3 cut(s) 703, 850, 1088
BsnI GGCC 3 cut(s) 365, 752, 1038
Bso31I GGTCTC 3 cut(s) 164, 470, 524
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
BspACI CCGC 2 cut(s) 686, 1072
BspANI GGCC 3 cut(s) 365, 752, 1038
BspCNI CTCAG 4 cut(s) 646, 905, 1067, 1094
BspFNI CGCG 2 cut(s) 914, 1089
BspMI ACCTGC 2 cut(s) 796, 852
BspPI GGATC 4 cut(s) 279, 911, 1131, 1195
BspTNI GGTCTC 3 cut(s) 164, 470, 524
BsrFI RCCGGY 1 cut(s) 118
BsrI ACTGG 5 cut(s) 748, 1008, 1065, 1182, 1236
BssAI RCCGGY 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 534, 858
BssMI GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
BssNI GRCGYC 1 cut(s) 957
BssT1I CCWWGG 2 cut(s) 534, 858
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 5 cut(s) 309, 629, 801, 884, 1164
BstACI GRCGYC 1 cut(s) 957
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 4 cut(s) 446, 574, 723, 988
BstDEI CTNAG 5 cut(s) 654, 732, 892, 1054, 1081
BstF5I GGATG 7 cut(s) 295, 346, 472, 608, 715, 867, 1167
BstFNI CGCG 2 cut(s) 914, 1089
BstHHI GCGC 1 cut(s) 1091
BstKTI GATC 9 cut(s) 274, 354, 880, 906, 939, 975, 1005, 1126, 1203
BstMAI GTCTC 7 cut(s) 164, 407, 470, 524, 672, 1215, 1244
BstMBI GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
BstMCI CGRYCG 1 cut(s) 1191
BstMWI GCNNNNNNNGC 2 cut(s) 404, 1116
BstNI CCWGG 1 cut(s) 901
BstPAI GACNNNNGTC 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 899, 1119
BstUI CGCG 2 cut(s) 914, 1089
BstV1I GCAGC 3 cut(s) 834, 883, 916
BstV2I GAAGAC 1 cut(s) 795
BstX2I RGATCY 2 cut(s) 351, 1002
BstXI CCANNNNNNTGG 1 cut(s) 487
BstYI RGATCY 2 cut(s) 351, 1002
BsuRI GGCC 3 cut(s) 365, 752, 1038
BtsCI GGATG 7 cut(s) 295, 346, 472, 608, 715, 867, 1167
BtsIMutI CAGTG 2 cut(s) 741, 806
BveI ACCTGC 2 cut(s) 796, 852
Cac8I GCNNGC 4 cut(s) 446, 574, 723, 988
CaiI CAGNNNCTG 1 cut(s) 1213
CfoI GCGC 1 cut(s) 1091
Cfr10I RCCGGY 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 1037
CseI GACGC 2 cut(s) 903, 965
Csp6I GTAC 2 cut(s) 326, 1165
CviAII CATG 1 cut(s) 253
CviQI GTAC 2 cut(s) 326, 1165
DdeI CTNAG 5 cut(s) 654, 732, 892, 1054, 1081
DpnI GATC 9 cut(s) 273, 353, 879, 905, 938, 974, 1004, 1125, 1202
DpnII GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
DraI TTTAAA 2 cut(s) 73, 796
DrdI GACNNNNNNGTC 1 cut(s) 959
DriI GACNNNNNGTC 2 cut(s) 913, 946
DseDI GACNNNNNNGTC 1 cut(s) 959
EaeI YGGCCR 2 cut(s) 363, 750
Eam1105I GACNNNNNGTC 2 cut(s) 913, 946
Eco130I CCWWGG 2 cut(s) 534, 858
Eco31I GGTCTC 3 cut(s) 164, 470, 524
Eco57I CTGAAG 2 cut(s) 1009, 1190
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 899
EcoT14I CCWWGG 2 cut(s) 534, 858
ErhI CCWWGG 2 cut(s) 534, 858
FaeI CATG 1 cut(s) 256
FaiI YATR 8 cut(s) 8, 144, 188, 254, 315, 317, 482, 1062
FalI AAGNNNNNCTT 4 cut(s) 338, 370, 369, 401
FaqI GGGAC 3 cut(s) 703, 850, 1088
FatI CATG 1 cut(s) 252
FauI CCCGC 1 cut(s) 679
FblI GTMKAC 1 cut(s) 624
Fnu4HI GCNGC 3 cut(s) 848, 897, 930
FokI GGATG 7 cut(s) 302, 353, 479, 595, 722, 854, 1154
Fsp4HI GCNGC 3 cut(s) 848, 897, 930
FspBI CTAG 3 cut(s) 441, 669, 1142
GlaI GCGC 1 cut(s) 1090
GluI GCNGC 3 cut(s) 848, 897, 930
GsaI CCCAGC 1 cut(s) 929
GsuI CTGGAG 4 cut(s) 125, 983, 991, 1219
HaeIII GGCC 3 cut(s) 365, 752, 1038
HapII CCGG 5 cut(s) 119, 1015, 1121, 1187, 1243
HgaI GACGC 2 cut(s) 903, 965
HhaI GCGC 1 cut(s) 1091
Hin1I GRCGYC 1 cut(s) 957
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 1089
HinP1I GCGC 1 cut(s) 1089
HincII GTYRAC 2 cut(s) 55, 1282
HindII GTYRAC 2 cut(s) 55, 1282
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 455
HpaII CCGG 5 cut(s) 119, 1015, 1121, 1187, 1243
HphI GGTGA 3 cut(s) 133, 1118, 1152
Hpy166II GTNNAC 4 cut(s) 55, 625, 1160, 1282
Hpy188I TCNGA 3 cut(s) 919, 952, 1172
Hpy188III TCNNGA 7 cut(s) 43, 104, 220, 355, 763, 875, 1000
Hpy8I GTNNAC 4 cut(s) 55, 625, 1160, 1282
Hpy99I CGWCG 5 cut(s) 956, 959, 965, 1119, 1139
HpyAV CCTTC 5 cut(s) 193, 340, 573, 738, 1214
HpyCH4III ACNGT 5 cut(s) 309, 629, 801, 884, 1164
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 252, 407, 725, 850
HpyF10VI GCNNNNNNNGC 2 cut(s) 404, 1116
HpyF3I CTNAG 5 cut(s) 654, 732, 892, 1054, 1081
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 957
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 1089
Kzo9I GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
Lsp1109I GCAGC 3 cut(s) 834, 883, 916
LweI GCATC 5 cut(s) 190, 331, 394, 617, 859
MaeI CTAG 3 cut(s) 441, 669, 1142
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 538, 1076
MalI GATC 9 cut(s) 273, 353, 879, 905, 938, 974, 1004, 1125, 1202
MboI GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
MboII GAAGA 3 cut(s) 142, 182, 800
MflI RGATCY 2 cut(s) 351, 1002
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 6 cut(s) 152, 284, 485, 561, 591, 658
MluNI TGGCCA 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 636, 975
MnlI CCTC 7 cut(s) 89, 196, 598, 667, 1005, 1231, 1243
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 4 cut(s) 72, 300, 617, 795
MslI CAYNNNNRTG 1 cut(s) 746
Msp20I TGGCCA 1 cut(s) 365
MspA1I CMGCKG 2 cut(s) 896, 929
MspI CCGG 5 cut(s) 119, 1015, 1121, 1187, 1243
MspR9I CCNGG 2 cut(s) 901, 1121
MvaI CCWGG 1 cut(s) 901
MvnI CGCG 2 cut(s) 914, 1089
MwoI GCNNNNNNNGC 2 cut(s) 404, 1116
NciI CCSGG 1 cut(s) 1121
NdeII GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
NlaIII CATG 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 661
NmuCI GTSAC 2 cut(s) 538, 1076
PcsI WCGNNNNNNNCGW 4 cut(s) 951, 960, 1093, 1143
PfeI GAWTC 1 cut(s) 455
PflFI GACNNNGTC 2 cut(s) 959, 1182
PkrI GCNGC 3 cut(s) 849, 898, 931
PshAI GACNNNNGTC 1 cut(s) 536
PsiI TTATAA 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 899
PspFI CCCAGC 1 cut(s) 925
PspGI CCWGG 1 cut(s) 899
PspPI GGNCC 1 cut(s) 1037
PstNI CAGNNNCTG 1 cut(s) 1213
PsuI RGATCY 2 cut(s) 351, 1002
PsyI GACNNNGTC 2 cut(s) 959, 1182
PvuII CAGCTG 2 cut(s) 896, 929
RsaI GTAC 2 cut(s) 327, 1166
RsaNI GTAC 2 cut(s) 326, 1165
RseI CAYNNNNRTG 1 cut(s) 746
SaqAI TTAA 4 cut(s) 72, 300, 617, 795
SatI GCNGC 3 cut(s) 848, 897, 930
Sau3AI GATC 9 cut(s) 271, 351, 877, 903, 936, 972, 1002, 1123, 1200
Sau96I GGNCC 1 cut(s) 1037
ScrFI CCNGG 2 cut(s) 901, 1121
SduI GDGCHC 1 cut(s) 298
SfaNI GCATC 5 cut(s) 190, 331, 394, 617, 859
SmiMI CAYNNNNRTG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 6 cut(s) 152, 284, 485, 561, 591, 658
SsiI CCGC 2 cut(s) 686, 1072
SspMI CTAG 3 cut(s) 441, 669, 1142
StyD4I CCNGG 2 cut(s) 899, 1119
StyI CCWWGG 2 cut(s) 534, 858
TaaI ACNGT 5 cut(s) 309, 629, 801, 884, 1164
TaiI ACGT 1 cut(s) 150
TaqI TCGA 6 cut(s) 245, 595, 906, 939, 975, 1199
TasI AATT 6 cut(s) 152, 284, 485, 561, 591, 658
TfiI GAWTC 1 cut(s) 455
Tru1I TTAA 4 cut(s) 72, 300, 617, 795
Tru9I TTAA 4 cut(s) 72, 300, 617, 795
TscAI CASTG 2 cut(s) 748, 806
TseFI GTSAC 2 cut(s) 538, 1076
TseI GCWGC 3 cut(s) 847, 896, 929
Tsp45I GTSAC 2 cut(s) 538, 1076
TspDTI ATGAA 3 cut(s) 183, 212, 269
TspGWI ACGGA 3 cut(s) 284, 860, 1103
TspRI CASTG 2 cut(s) 748, 806
Tth111I GACNNNGTC 2 cut(s) 959, 1182
XapI RAATTY 3 cut(s) 561, 591, 658
XmiI GTMKAC 1 cut(s) 624
XspI CTAG 3 cut(s) 441, 669, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.