Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

16144411 .. 16147478

Gene Structure 3068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG176300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTTATTATACGCGTTTACTTTGAAGGTGGGTTGGTATTTTCCCTGCTATGAAAGTTCCAAGAAATGTCAATGCATTGACCTCAAACTTTTGCCTCGTCTCTTTTTTAATTTGGTTGGTGTTCAAAATATGAGAGCAGGGGCACTTGAATATTCTGGGTTTGTGAGGAAAATGAGGACTCTTTCGATCTTCATCTTTACTCTTTCTTCATCCAAAGCAAAAGCCCCATCAACCTCTTGGAGAAGTCAAGCTCTGTGCCCTGCCTGCATTTCTGTCGAGGAACCACTTTCTTGGGACATCAGACTCAAAATAGCTATTGGAGCTGCTCGGGGATTAAATTTATTGCACAGTATACAAATCACACACAGAGATGTCAAACCCTCAAATATATTGCTCGATGAGGATTACAATACAAAACTATCAGATTTTTCCTTGGCAAAATGGGGGTCAGCTGATGGAGAGTTAGATGTGTCTACAGGGGTTTGTGGCTCAATAGGATATATCGATCCAGAATACCTGAGAACAGGTCATGTGTGTGTGAAGAGCGATGTGTATAGCTTCGGTGTTTTGCTGCTTGAGATTCTGACAGGATTAAAGTCCTTCGATTTAAGCCGATCTGAGGAAGAATTTAGTCTGGCTAGGTGGGCTATACCACTTTTGTGTGATGAAGCAAAGTTGCAAACCATCATGGATGAGCAGATTAAGGGCCAATATTCCTCCCAGGAAGCATTGCAGAGTGCACAGCTTGCTCTAAAATGTTTAGAAACAGATCCTGAAAGCCGACCTTCCATGAAAGAAGTTGTGGAGCAATTGGAAAACATTCAGGCATTGAAGGGAAAACCAGACCAGTCCAAGCTTACTACTATGCAGTATTCTTCTAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

295

Amino Acids

32.98

Weight (kDa)

6.02

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	93 - 271	2e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	103 - 269	4.6e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	352, 473
AccII	CGCG	1 cut(s)	14
AclWI	GGATC	2 cut(s)	500, 764
AcsI	RAATTY	2 cut(s)	337, 626
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	4 cut(s)	25, 125, 149, 832
AjnI	CCWGG	1 cut(s)	720
AleI	CACNNNNGTG	1 cut(s)	658
AluBI	AGCT	7 cut(s)	251, 314, 323, 452, 558, 745, 856
AluI	AGCT	7 cut(s)	251, 314, 323, 452, 558, 745, 856
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	104
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	500, 764
AlwNI	CAGNNNCTG	1 cut(s)	773
Ama87I	CYCGRG	1 cut(s)	327
AoxI	GGCC	1 cut(s)	706
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	2 cut(s)	323, 571
ApoI	RAATTY	2 cut(s)	337, 626
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
Asp700I	GAANNNNTTC	1 cut(s)	819
AspS9I	GGNCC	1 cut(s)	706
AvaI	CYCGRG	1 cut(s)	327
BaeGI	GKGCMC	3 cut(s)	145, 260, 742
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	2 cut(s)	310, 558
BccI	CCATC	3 cut(s)	235, 449, 692
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	474
BisI	GCNGC	2 cut(s)	324, 572
BlsI	GCNGC	2 cut(s)	325, 573
Bme1390I	CCNGG	1 cut(s)	722
BmeT110I	CYCGRG	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	722
BpuEI	CTTGAG	1 cut(s)	596
Bsa29I	ATCGAT	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	432, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	1 cut(s)	847
Bse3DI	GCAATG	1 cut(s)	728
Bse8I	GATNNNNATC	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	722
BseCI	ATCGAT	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	432, 720
BseGI	GGATG	2 cut(s)	209, 697
BseJI	GATNNNNATC	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	1 cut(s)	728
BseMII	CTCAG	2 cut(s)	509, 609
BseNI	ACTGG	1 cut(s)	847
BseSI	GKGCMC	3 cut(s)	145, 260, 742
BseXI	GCAGC	2 cut(s)	310, 558
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	708
BshVI	ATCGAT	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	742
BsiHKCI	CYCGRG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	708
BsoBI	CYCGRG	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	145, 260, 742
Bsp143I	GATC	4 cut(s)	186, 505, 614, 769
BspANI	GGCC	1 cut(s)	708
BspCNI	CTCAG	2 cut(s)	510, 610
BspDI	ATCGAT	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	500, 764
BspQI	GCTCTTC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	847
BssECI	CCNNGG	2 cut(s)	432, 720
BssMI	GATC	4 cut(s)	186, 505, 614, 769
BssNAI	GTATAC	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	2 cut(s)	265, 747
BstDEI	CTNAG	2 cut(s)	518, 618
BstF5I	GGATG	2 cut(s)	209, 697
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	4 cut(s)	189, 508, 617, 772
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	4 cut(s)	186, 505, 614, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 320, 644, 746
BstNI	CCWGG	1 cut(s)	722
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	3 cut(s)	145, 260, 742
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	310, 558
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	769
BstZ17I	GTATAC	1 cut(s)	353
Bsu15I	ATCGAT	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	708
BsuTUI	ATCGAT	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	209, 697
Cac8I	GCNNGC	2 cut(s)	265, 747
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	706
ClaI	ATCGAT	1 cut(s)	504
CviAII	CATG	3 cut(s)	530, 688, 790
DdeI	CTNAG	2 cut(s)	518, 618
DpnI	GATC	4 cut(s)	188, 507, 616, 771
DpnII	GATC	4 cut(s)	186, 505, 614, 769
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	533, 691, 793
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	529, 687, 789
FblI	GTMKAC	2 cut(s)	352, 473
Fnu4HI	GCNGC	2 cut(s)	324, 572
FokI	GGATG	2 cut(s)	196, 704
Fsp4HI	GCNGC	2 cut(s)	324, 572
FspBI	CTAG	1 cut(s)	639
GluI	GCNGC	2 cut(s)	324, 572
HaeIII	GGCC	1 cut(s)	708
Hin1II	CATG	3 cut(s)	533, 691, 793
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	3 cut(s)	178, 303, 580
Hpy166II	GTNNAC	4 cut(s)	18, 353, 474, 740
Hpy188I	TCNGA	4 cut(s)	302, 424, 585, 619
Hpy188III	TCNNGA	2 cut(s)	509, 773
Hpy8I	GTNNAC	4 cut(s)	18, 353, 474, 740
HpyAV	CCTTC	4 cut(s)	19, 610, 795, 826
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	7 cut(s)	75, 267, 346, 679, 733, 740, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 320, 644, 746
HpyF3I	CTNAG	2 cut(s)	518, 618
Hsp92II	CATG	3 cut(s)	533, 691, 793
Kzo9I	GATC	4 cut(s)	186, 505, 614, 769
LguI	GCTCTTC	1 cut(s)	536
LmnI	GCTCC	2 cut(s)	320, 805
Lsp1109I	GCAGC	2 cut(s)	310, 558
MaeI	CTAG	1 cut(s)	639
MalI	GATC	4 cut(s)	188, 507, 616, 771
MboI	GATC	4 cut(s)	186, 505, 614, 769
MboII	GAAGA	5 cut(s)	181, 198, 553, 635, 867
MfeI	CAATTG	1 cut(s)	809
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	3 cut(s)	145, 260, 742
MluCI	AATT	5 cut(s)	109, 337, 626, 809, 880
MluI	ACGCGT	1 cut(s)	12
MlyI	GAGTC	2 cut(s)	172, 297
Mph1103I	ATGCAT	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	6 cut(s)	108, 335, 593, 608, 702, 886
MslI	CAYNNNNRTG	3 cut(s)	369, 534, 658
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	722
MunI	CAATTG	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	264, 320, 644, 746
NdeII	GATC	4 cut(s)	186, 505, 614, 769
NlaIII	CATG	3 cut(s)	533, 691, 793
NlaIV	GGNNCC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	77
OliI	CACNNNNGTG	1 cut(s)	658
PciSI	GCTCTTC	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	1 cut(s)	580
PkrI	GCNGC	2 cut(s)	325, 573
PleI	GAGTC	2 cut(s)	172, 297
PpsI	GAGTC	2 cut(s)	172, 297
Psp6I	CCWGG	1 cut(s)	720
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	452
RseI	CAYNNNNRTG	3 cut(s)	369, 534, 658
SapI	GCTCTTC	1 cut(s)	536
SaqAI	TTAA	6 cut(s)	108, 335, 593, 608, 702, 886
SatI	GCNGC	2 cut(s)	324, 572
Sau3AI	GATC	4 cut(s)	186, 505, 614, 769
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	2 cut(s)	172, 297
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	3 cut(s)	145, 260, 742
SfcI	CTRYAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	3 cut(s)	369, 534, 658
SmlI	CTYRAG	1 cut(s)	575
SmoI	CTYRAG	1 cut(s)	575
Sse9I	AATT	5 cut(s)	109, 337, 626, 809, 880
SspI	AATATT	2 cut(s)	152, 713
SspMI	CTAG	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	720
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	5 cut(s)	185, 276, 396, 504, 603
TasI	AATT	5 cut(s)	109, 337, 626, 809, 880
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	6 cut(s)	108, 335, 593, 608, 702, 886
Tru9I	TTAA	6 cut(s)	108, 335, 593, 608, 702, 886
TseI	GCWGC	2 cut(s)	323, 571
TspDTI	ATGAA	5 cut(s)	66, 181, 198, 681, 806
VneI	GTGCAC	1 cut(s)	738
XapI	RAATTY	2 cut(s)	337, 626
XcmI	CCANNNNNNNNNTGG	1 cut(s)	234
XmiI	GTMKAC	2 cut(s)	352, 473
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	1 cut(s)	639
Zsp2I	ATGCAT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.