Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

13982989 .. 13983932

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017191

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAATTGGGTCTCCCAGAGGAGGAGATAAAGTATCTCATAGAACAAATTGAGGAGGGCGTAGAGCTCATTCGTAGGTCATCAATAGTTAATAAGTGGAACTGCATGAAATTTCAGTACACGGACCAACTTGTGGAACTAGATAGGTCTTTGAGAAGACTGCTTGATGTATTGATGGTGCAAGGAGTCAGGGATGTGAAGGAGACTCTGGTTTTGGCAAGGAAAAACGGTGACCAACTTGTTGAGTCGGCGAGGGATGGGAAGGAGACCTTGGCTTTGGCAAGGAAAATAAGCATAGTTCAAATCCAAAACCTAGACACGAAATCGACCTCCACGGTCCGATGGCGCAGTTCTGGCCTGAAGAACGCAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.4

Weight (kDa)

8.76

Isoelectric Point (pI)

57.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 77	4.8e-10	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	110
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	22, 133
AgsI	TTSAA	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	2 cut(s)	67, 373
AluI	AGCT	2 cut(s)	67, 373
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	17, 197, 260
AoxI	GGCC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	110
ArsI	GACNNNNNNTTYG	4 cut(s)	196, 228, 259, 291
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	124, 337
AsuHPI	GGTGA	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	124, 337
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	69
BccI	CCATC	3 cut(s)	169, 251, 336
BcoDI	GTCTC	3 cut(s)	17, 197, 260
BfaI	CTAG	2 cut(s)	140, 314
Bme18I	GGWCC	2 cut(s)	124, 337
BmgT120I	GGNCC	2 cut(s)	124, 337
BpiI	GAAGAC	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	17, 260
BsaJI	CCNNGG	2 cut(s)	270, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 133
BseDI	CCNNGG	2 cut(s)	270, 333
BseGI	GGATG	2 cut(s)	199, 262
BseLI	CCNNNNNNNGG	2 cut(s)	22, 133
BseRI	GAGGAG	3 cut(s)	35, 38, 68
BshFI	GGCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	22, 133
BsmAI	GTCTC	3 cut(s)	17, 197, 260
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	2 cut(s)	17, 260
Bsp1286I	GDGCHC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	357
BspTNI	GGTCTC	2 cut(s)	17, 260
BssECI	CCNNGG	2 cut(s)	270, 333
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	230, 337
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	230
BstF5I	GGATG	2 cut(s)	199, 262
BstHHI	GCGC	1 cut(s)	348
BstMAI	GTCTC	3 cut(s)	17, 197, 260
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	230
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	199, 262
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	124, 337
CpoI	CGGWCCG	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	118
CspI	CGGWCCG	1 cut(s)	337
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	4 cut(s)	67, 275, 357, 373
CviKI_1	RGCY	4 cut(s)	67, 275, 357, 373
CviQI	GTAC	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	2 cut(s)	17, 260
Eco47I	GGWCC	2 cut(s)	124, 337
Eco53kI	GAGCTC	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	230
EcoICRI	GAGCTC	1 cut(s)	67
EcoO65I	GGTNACC	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	109
FaiI	YATR	3 cut(s)	41, 107, 296
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	1 cut(s)	105
FokI	GGATG	2 cut(s)	206, 269
FriOI	GRGCYC	1 cut(s)	69
FspBI	CTAG	2 cut(s)	140, 314
GlaI	GCGC	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	357
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	186, 205, 245
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	2 cut(s)	341, 377
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	2 cut(s)	193, 256
HpyCH4III	ACNGT	2 cut(s)	230, 337
HpyCH4V	TGCA	2 cut(s)	105, 181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	346
LpnPI	CCDG	5 cut(s)	30, 175, 194, 339, 371
MaeI	CTAG	2 cut(s)	140, 314
MaeIII	GTNAC	1 cut(s)	230
MboII	GAAGA	2 cut(s)	168, 373
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	5, 48, 110
MlyI	GAGTC	3 cut(s)	195, 199, 254
MnlI	CCTC	6 cut(s)	13, 16, 46, 49, 246, 340
MseI	TTAA	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	133
PleI	GAGTC	3 cut(s)	194, 199, 253
PpsI	GAGTC	3 cut(s)	194, 199, 253
Psp124BI	GAGCTC	1 cut(s)	69
PspEI	GGTNACC	1 cut(s)	230
PspPI	GGNCC	2 cut(s)	124, 337
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
Rsr2I	CGGWCCG	1 cut(s)	337
RsrII	CGGWCCG	1 cut(s)	337
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	90
Sau96I	GGNCC	2 cut(s)	124, 337
SchI	GAGTC	3 cut(s)	195, 199, 254
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	7 cut(s)	69, 80, 149, 272, 315, 332, 375
SinI	GGWCC	2 cut(s)	124, 337
Sse9I	AATT	3 cut(s)	5, 48, 110
SspMI	CTAG	2 cut(s)	140, 314
SstI	GAGCTC	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	230, 337
TaqI	TCGA	1 cut(s)	326
TasI	AATT	3 cut(s)	5, 48, 110
TatI	WGTACW	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	133
VpaK11BI	GGWCC	2 cut(s)	124, 337
XapI	RAATTY	1 cut(s)	110
XspI	CTAG	2 cut(s)	140, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.