Rroxscaffold_2G00138890
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
77094569 .. 77102003
7435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138890.1

Sequence Viewer

Length: 1428 bp
ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCTGTTCTTGGATCAGCCTTTGGGGTGTTGTTTGATGTTGTCAAGAAAGCAGTTGACAAGCCTACTGCCTTTAAATCCCTCCTTGAGAATATCAAGTTTTCTCTGGAGTTTCTAAAGCCGGTGATTGAAAAGATAGGAGAGCATAACGTGGAATTGGGTCTCTCAGATGAAGAAATAAAGCATCTTATAACAGAAATGAAGGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAAGTCAGTAACTGGAACTGCATGAAGTCTTATTACACGGATCAACTTATTGAATTGGATGGTTCTCTTAAAAGACTGTTCCATATATTGATGGTACAAGGAGTAAGGGATGCGAAGGAGACCTTGATTTTGGCCAGAAAACATCAAGACCAACTTATTGAAACGGCAAAAGATGCAAGGGAGACACTTGTTTTAGCACAAAAGAACACTAGCCAGCTTACTGAATCGGTAAATGATGGGAAGGAGACCTTAGAATTGGCAAGAAAAAACGCTGACCAATCAGCAAAAGATGGGAAGGAGACCTTGGTTTTGGCTAGGAAAACTAGAAGGTTGCTTAAGCGAATTGAACGACTGGTGACTTGCACTTCCAAAGTGAAATTTAAACCCGCTACCTCCACAGTGTCAGTTACACCAGTTAACAAACAGGTCACGGCTCACAATGGGAACAAAATTCCCAAAGCTAGCAGAAGAGCAGGGAGAAATCGAGTTTTGGAGGCATCCAACTTAATAGTCTACCGTTTTGCCGAGTTGGTCAATGCTACTGAGAATTTCAAGTCTAGTGGGGGAGACTTTGTGGGGACTTTCAAGGGTTGGGTGGATGAGAATACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGAGATTGAACCTAGAAAGTGTCGAAGACTTTAAACAGTGGCAGCATTGTGAACTTGTGAAATCTGATGATTCTCTAAATCCTATGCATGGTGTCCTCTCAGTGAACTTCCTCGGAAGGCTTTCTCATCCCAACCTTGTCAAGCTATTGGGATACTGTCATGAGAATAAGGAGTTGGTCTTAGTTTATGAGTTCATGCCAAATGGAAGCTTATTTAATCATCTGTCTAGAAGGAACCCTGAGGAACCCCTGTGTTGGGATAACAGACTCAGAATCGCTATTGGAGCTGCTCAGGTCTTGACCTTGTTACACATTTTACGAATCATACACAGAGATGTCACACCCTCAAATATATTGCTTGATGAGGATTATAATACAAAAATCATGGACTTTTCCTTGTCAGAATGGGGGCCAACTGATGGAAAGTCACATGTCTCAACAAAGGTTTGTGGCACAATGGGTTATATTGATCCAAACTATTTGAGAACAGGTAATGATATCTGTATCAAATATTGA

Protein Analysis

475

Amino Acids

53.23

Weight (kDa)

8.99

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 136 6.9e-27 Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase PF00069 299 - 466 4.8e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 339 - 450 1.1e-20 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 218, 1284
AccB7I CCANNNNNTGG 1 cut(s) 1331
AccI GTMKAC 1 cut(s) 774
AciI CCGC 1 cut(s) 648
AclWI GGATC 3 cut(s) 49, 309, 1376
AcoI YGGCCR 2 cut(s) 393, 900
AcsI RAATTY 3 cut(s) 638, 711, 808
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 4 cut(s) 1001, 1167, 1168, 1331
AflII CTTAAG 1 cut(s) 596
AflIII ACRYGT 1 cut(s) 1342
AgsI TTSAA 7 cut(s) 158, 314, 422, 608, 814, 847, 922
AjuI GAANNNNNNNTTGG 4 cut(s) 548, 580, 1070, 1102
AluBI AGCT 6 cut(s) 244, 478, 722, 1057, 1122, 1199
AluI AGCT 6 cut(s) 244, 478, 722, 1057, 1122, 1199
Alw26I GTCTC 7 cut(s) 194, 374, 437, 500, 554, 822, 1351
AlwI GGATC 3 cut(s) 49, 309, 1376
AlwNI CAGNNNCTG 1 cut(s) 273
AoxI GGCC 3 cut(s) 393, 900, 1322
ApeKI GCWGC 2 cut(s) 955, 1199
ApoI RAATTY 3 cut(s) 638, 711, 808
ArsI GACNNNNNNTTYG 4 cut(s) 373, 405, 553, 585
Asp700I GAANNNNTTC 1 cut(s) 1033
AspS9I GGNCC 1 cut(s) 1322
AsuHPI GGTGA 2 cut(s) 163, 628
AsuNHI GCTAGC 1 cut(s) 722
AxyI CCTNAGG 1 cut(s) 1152
BalI TGGCCA 1 cut(s) 395
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbsI GAAGAC 1 cut(s) 945
BbvI GCAGC 2 cut(s) 967, 1186
BccI CCATC 5 cut(s) 314, 346, 491, 545, 1325
BceAI ACGGC 3 cut(s) 441, 708, 887
BciVI GTATCC 1 cut(s) 1058
BcoDI GTCTC 7 cut(s) 194, 374, 437, 500, 554, 822, 1351
BfaI CTAG 7 cut(s) 471, 576, 585, 723, 819, 926, 1140
BfrI CTTAAG 1 cut(s) 596
BfuI GTATCC 1 cut(s) 1058
BisI GCNGC 2 cut(s) 956, 1200
BlsI GCNGC 2 cut(s) 957, 1201
BmgT120I GGNCC 1 cut(s) 1322
BmiI GGNNCC 3 cut(s) 1148, 1158, 1323
BmsI GCATC 4 cut(s) 220, 361, 424, 767
BmtI GCTAGC 1 cut(s) 726
BpiI GAAGAC 1 cut(s) 945
BpmI CTGGAG 1 cut(s) 155
Bpu10I CCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 1 cut(s) 134
BsaI GGTCTC 4 cut(s) 194, 374, 500, 554
BsaJI CCNNGG 2 cut(s) 564, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 819, 849
Bsc4I CCNNNNNNNGG 4 cut(s) 1001, 1167, 1168, 1331
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 4 cut(s) 278, 618, 674, 898
Bse21I CCTNAGG 1 cut(s) 1152
BseDI CCNNGG 2 cut(s) 564, 1024
BseGI GGATG 5 cut(s) 325, 376, 758, 865, 1039
BseLI CCNNNNNNNGG 4 cut(s) 1001, 1167, 1168, 1331
BseMII CTCAG 6 cut(s) 207, 795, 1026, 1143, 1195, 1217
BseNI ACTGG 4 cut(s) 278, 618, 674, 898
BseXI GCAGC 2 cut(s) 967, 1186
BshFI GGCC 3 cut(s) 395, 902, 1324
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 4 cut(s) 1001, 1167, 1168, 1331
BsmAI GTCTC 7 cut(s) 194, 374, 437, 500, 554, 822, 1351
BsmFI GGGAC 1 cut(s) 853
BsnI GGCC 3 cut(s) 395, 902, 1324
Bso31I GGTCTC 4 cut(s) 194, 374, 500, 554
Bsp143I GATC 3 cut(s) 41, 301, 1381
BspACI CCGC 1 cut(s) 648
BspANI GGCC 3 cut(s) 395, 902, 1324
BspCNI CTCAG 6 cut(s) 206, 796, 1025, 1144, 1194, 1216
BspHI TCATGA 1 cut(s) 1072
BspLI GGNNCC 3 cut(s) 1148, 1158, 1323
BspOI GCTAGC 1 cut(s) 726
BspPI GGATC 3 cut(s) 49, 309, 1376
BspQI GCTCTTC 1 cut(s) 724
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 4 cut(s) 194, 374, 500, 554
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 4 cut(s) 278, 618, 674, 898
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 564, 1024
BssMI GATC 3 cut(s) 41, 301, 1381
BssT1I CCWWGG 1 cut(s) 564
Bst4CI ACNGT 5 cut(s) 339, 661, 779, 951, 1070
Bst6I CTCTTC 1 cut(s) 724
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 476, 724, 873
BstDEI CTNAG 9 cut(s) 193, 511, 804, 882, 1012, 1093, 1152, 1181, 1203
BstF5I GGATG 5 cut(s) 325, 376, 758, 865, 1039
BstKTI GATC 3 cut(s) 44, 304, 1384
BstMAI GTCTC 7 cut(s) 194, 374, 437, 500, 554, 822, 1351
BstMBI GATC 3 cut(s) 41, 301, 1381
BstMWI GCNNNNNNNGC 2 cut(s) 434, 1196
BstNSI RCATGY 1 cut(s) 1346
BstV1I GCAGC 2 cut(s) 967, 1186
BstV2I GAAGAC 1 cut(s) 945
Bsu36I CCTNAGG 1 cut(s) 1152
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 3 cut(s) 395, 902, 1324
BtsCI GGATG 5 cut(s) 325, 376, 758, 865, 1039
BtsIMutI CAGTG 4 cut(s) 666, 891, 956, 1020
Cac8I GCNNGC 3 cut(s) 476, 724, 873
CaiI CAGNNNCTG 1 cut(s) 273
CciI TCATGA 1 cut(s) 1072
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 1 cut(s) 1322
Csp6I GTAC 1 cut(s) 356
CspCI CAANNNNNGTGG 2 cut(s) 802, 837
CviAII CATG 6 cut(s) 283, 1001, 1073, 1108, 1297, 1343
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 9 cut(s) 193, 511, 804, 882, 1012, 1093, 1152, 1181, 1203
DpnI GATC 3 cut(s) 43, 303, 1383
DpnII GATC 3 cut(s) 41, 301, 1381
DraI TTTAAA 3 cut(s) 103, 643, 946
EaeI YGGCCR 2 cut(s) 393, 900
Eam1104I CTCTTC 1 cut(s) 724
EarI CTCTTC 1 cut(s) 724
Eco130I CCWWGG 1 cut(s) 564
Eco31I GGTCTC 4 cut(s) 194, 374, 500, 554
Eco32I GATATC 1 cut(s) 1411
Eco81I CCTNAGG 1 cut(s) 1152
EcoRV GATATC 1 cut(s) 1411
EcoT14I CCWWGG 1 cut(s) 564
EcoT22I ATGCAT 1 cut(s) 1002
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 6 cut(s) 286, 1004, 1076, 1111, 1300, 1346
FalI AAGNNNNNCTT 8 cut(s) 368, 400, 399, 431, 494, 526, 548, 580
FaqI GGGAC 1 cut(s) 853
FatI CATG 6 cut(s) 282, 1000, 1072, 1107, 1296, 1342
FauI CCCGC 1 cut(s) 655
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 2 cut(s) 956, 1200
FokI GGATG 5 cut(s) 332, 383, 745, 872, 1026
Fsp4HI GCNGC 2 cut(s) 956, 1200
FspBI CTAG 7 cut(s) 471, 576, 585, 723, 819, 926, 1140
GluI GCNGC 2 cut(s) 956, 1200
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 3 cut(s) 395, 902, 1324
HapII CCGG 1 cut(s) 149
Hin1II CATG 6 cut(s) 286, 1004, 1076, 1111, 1300, 1346
HincII GTYRAC 2 cut(s) 85, 679
HindII GTYRAC 2 cut(s) 85, 679
HindIII AAGCTT 2 cut(s) 242, 1120
HinfI GANTC 5 cut(s) 485, 983, 1179, 1185, 1233
HpaI GTTAAC 1 cut(s) 679
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 163, 628
Hpy166II GTNNAC 5 cut(s) 85, 679, 775, 965, 1018
Hpy188I TCNGA 5 cut(s) 196, 979, 1028, 1184, 1315
Hpy188III TCNNGA 8 cut(s) 73, 134, 250, 407, 913, 1073, 1140, 1210
Hpy8I GTNNAC 5 cut(s) 85, 679, 775, 965, 1018
HpyAV CCTTC 8 cut(s) 223, 370, 496, 550, 582, 888, 1023, 1137
HpyCH4III ACNGT 5 cut(s) 339, 661, 779, 951, 1070
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 282, 437, 624, 875, 1000
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 1196
HpyF3I CTNAG 9 cut(s) 193, 511, 804, 882, 1012, 1093, 1152, 1181, 1203
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 6 cut(s) 286, 1004, 1076, 1111, 1300, 1346
KspAI GTTAAC 1 cut(s) 679
Kzo9I GATC 3 cut(s) 41, 301, 1381
LguI GCTCTTC 1 cut(s) 724
LmnI GCTCC 1 cut(s) 1196
Lsp1109I GCAGC 2 cut(s) 967, 1186
LweI GCATC 4 cut(s) 220, 361, 424, 767
MaeI CTAG 7 cut(s) 471, 576, 585, 723, 819, 926, 1140
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 7 cut(s) 269, 616, 667, 688, 1218, 1249, 1338
MalI GATC 3 cut(s) 43, 303, 1383
MboI GATC 3 cut(s) 41, 301, 1381
MboII GAAGA 3 cut(s) 212, 741, 950
MlsI TGGCCA 1 cut(s) 395
MluCI AATT 7 cut(s) 182, 314, 515, 603, 638, 711, 808
MluNI TGGCCA 1 cut(s) 395
MlyI GAGTC 1 cut(s) 1173
MmeI TCCRAC 1 cut(s) 786
MnlI CCTC 9 cut(s) 119, 226, 664, 748, 1019, 1034, 1147, 1267, 1270
Mox20I TGGCCA 1 cut(s) 395
Mph1103I ATGCAT 1 cut(s) 1002
MroXI GAANNNNTTC 1 cut(s) 1033
MscI TGGCCA 1 cut(s) 395
MseI TTAA 8 cut(s) 102, 330, 597, 642, 678, 767, 945, 1128
MslI CAYNNNNRTG 2 cut(s) 896, 1245
Msp20I TGGCCA 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 434, 1196
NdeII GATC 3 cut(s) 41, 301, 1381
NheI GCTAGC 1 cut(s) 722
NlaIII CATG 6 cut(s) 286, 1004, 1076, 1111, 1300, 1346
NlaIV GGNNCC 3 cut(s) 1148, 1158, 1323
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 4 cut(s) 616, 688, 1249, 1338
NsiI ATGCAT 1 cut(s) 1002
NspI RCATGY 1 cut(s) 1346
PagI TCATGA 1 cut(s) 1072
PciI ACATGT 1 cut(s) 1342
PciSI GCTCTTC 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 1033
PfeI GAWTC 4 cut(s) 485, 983, 1185, 1233
PflMI CCANNNNNTGG 1 cut(s) 1331
PkrI GCNGC 2 cut(s) 957, 1201
PleI GAGTC 1 cut(s) 1173
PpsI GAGTC 1 cut(s) 1173
PscI ACATGT 1 cut(s) 1342
PsiI TTATAA 2 cut(s) 218, 1284
PspN4I GGNNCC 3 cut(s) 1148, 1158, 1323
PspPI GGNCC 1 cut(s) 1322
PstNI CAGNNNCTG 1 cut(s) 273
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 2 cut(s) 896, 1245
SapI GCTCTTC 1 cut(s) 724
SaqAI TTAA 8 cut(s) 102, 330, 597, 642, 678, 767, 945, 1128
SatI GCNGC 2 cut(s) 956, 1200
Sau3AI GATC 3 cut(s) 41, 301, 1381
Sau96I GGNCC 1 cut(s) 1322
SchI GAGTC 1 cut(s) 1173
SfaNI GCATC 4 cut(s) 220, 361, 424, 767
SmiMI CAYNNNNRTG 2 cut(s) 896, 1245
SmlI CTYRAG 2 cut(s) 113, 596
SmoI CTYRAG 2 cut(s) 113, 596
Sse9I AATT 7 cut(s) 182, 314, 515, 603, 638, 711, 808
SsiI CCGC 1 cut(s) 648
SspI AATATT 1 cut(s) 1424
SspMI CTAG 7 cut(s) 471, 576, 585, 723, 819, 926, 1140
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 5 cut(s) 339, 661, 779, 951, 1070
TaiI ACGT 1 cut(s) 180
TaqI TCGA 2 cut(s) 745, 936
TasI AATT 7 cut(s) 182, 314, 515, 603, 638, 711, 808
TfiI GAWTC 4 cut(s) 485, 983, 1185, 1233
Tru1I TTAA 8 cut(s) 102, 330, 597, 642, 678, 767, 945, 1128
Tru9I TTAA 8 cut(s) 102, 330, 597, 642, 678, 767, 945, 1128
TscAI CASTG 4 cut(s) 666, 898, 956, 1020
TseFI GTSAC 4 cut(s) 616, 688, 1249, 1338
TseI GCWGC 2 cut(s) 955, 1199
Tsp45I GTSAC 4 cut(s) 616, 688, 1249, 1338
TspDTI ATGAA 4 cut(s) 213, 242, 299, 1096
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 4 cut(s) 666, 898, 956, 1020
Van91I CCANNNNNTGG 1 cut(s) 1331
Vha464I CTTAAG 1 cut(s) 596
XapI RAATTY 3 cut(s) 638, 711, 808
XbaI TCTAGA 1 cut(s) 1139
XceI RCATGY 1 cut(s) 1346
XmiI GTMKAC 1 cut(s) 774
XmnI GAANNNNTTC 1 cut(s) 1033
XspI CTAG 7 cut(s) 471, 576, 585, 723, 819, 926, 1140
Zsp2I ATGCAT 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.