Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

16186478 .. 16190634

Gene Structure 4157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG176600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGAGCAGGGGCACTTGAATATGCTGGGTTTGTGAGGAAAGTGAGGACTCCTTCGATCTTGATCTTTACTCTTTCTTCATCCAAAGCAAAAGCCCCATCAACCTCTTGGAGAAGTCAAGCTCTGTGCCCTGCCTGGAACCCTGATGAGGAACCCCTATGTTGGGATAACAGACTCAGAATCGCTATTGGAGCTGCTCAGGTCTTGACTTTATTGCACATTTTACAAATCATACACAGAGATGTCACACCCTCAAATATATTGCTTGATGAGGATTACAATACAAAAATCATGGATTTTTCCTTGTCAGAATGGGGGCCAGCTGATGGAAAGTTACACGTGTCAACAAAGATTTGTGGCACAATGGGTTATATTGATCCAGACTACTTGAGAACAGGTCATTTGTCTGTGAAGAGTGATGTGTATAGCTTCGGTGTTGTGCTGCTTGAGATCCTTACAGGGTTAAAGACAATCGATTTTAGCCGCCCTAAGGAACAAATCAAACTGGTTGACTGGGCAACACCACTTCTCTGTGATGAAACAAAGTTGCAAACCATAATGGATGAGCAGATAAAGGGCCAATACCCTTCCCAGGAAGCATTACAGACTGCGCAGCTTACTCTAAGATGTTTAGAAACAGATCCTGAGAGACGACCTTCCATGAAAGAAGTTGTGGAGGAATTAGAACACATTCGGGGATTGAAGGAAAAACCAAGCCAGTCAAAGCTTACCACCATGCAATCTTCTTCTAGTTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

253

Amino Acids

28.45

Weight (kDa)

6.0

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	50 - 228	1.5e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	66 - 226	1.9e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	3 cut(s)	371, 445, 635
AcvI	CACGTG	1 cut(s)	340
AfiI	CCNNNNNNNGG	6 cut(s)	148, 162, 163, 326, 490, 592
AflIII	ACRYGT	2 cut(s)	337, 339
AgsI	TTSAA	2 cut(s)	20, 703
AjnI	CCWGG	2 cut(s)	134, 591
AluBI	AGCT	6 cut(s)	122, 194, 323, 429, 616, 727
AluI	AGCT	6 cut(s)	122, 194, 323, 429, 616, 727
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	3 cut(s)	371, 445, 635
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	2 cut(s)	317, 577
ApeKI	GCWGC	3 cut(s)	194, 442, 613
Asp700I	GAANNNNTTC	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	317, 577
AxyI	CCTNAGG	1 cut(s)	489
BaeGI	GKGCMC	2 cut(s)	16, 131
BbrPI	CACGTG	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	181, 429, 625
BccI	CCATC	2 cut(s)	106, 320
BciT130I	CCWGG	2 cut(s)	136, 593
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	1 cut(s)	750
BisI	GCNGC	4 cut(s)	195, 443, 484, 614
BlsI	GCNGC	4 cut(s)	196, 444, 485, 615
Bme1390I	CCNGG	2 cut(s)	136, 593
BmgT120I	GGNCC	2 cut(s)	317, 577
BmiI	GGNNCC	3 cut(s)	140, 153, 318
BmrFI	CCNGG	2 cut(s)	136, 593
BmrI	ACTGGG	1 cut(s)	523
BmuI	ACTGGG	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	409, 467
Bsa29I	ATCGAT	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	340
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	591
Bsc4I	CCNNNNNNNGG	6 cut(s)	148, 162, 163, 326, 490, 592
Bse1I	ACTGG	3 cut(s)	510, 518, 718
Bse21I	CCTNAGG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	136, 593
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	2 cut(s)	80, 568
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	6 cut(s)	148, 162, 163, 326, 490, 592
BseMII	CTCAG	3 cut(s)	190, 212, 636
BseNI	ACTGG	3 cut(s)	510, 518, 718
BseSI	GKGCMC	2 cut(s)	16, 131
BseXI	GCAGC	3 cut(s)	181, 429, 625
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	319, 579
BshVI	ATCGAT	1 cut(s)	474
BslI	CCNNNNNNNGG	6 cut(s)	148, 162, 163, 326, 490, 592
BsmAI	GTCTC	1 cut(s)	643
BsmBI	CGTCTC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	319, 579
Bsp1286I	GDGCHC	2 cut(s)	16, 131
Bsp143I	GATC	5 cut(s)	57, 63, 376, 450, 640
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	2 cut(s)	319, 579
BspCNI	CTCAG	3 cut(s)	189, 211, 637
BspDI	ATCGAT	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	140, 153, 318
BspPI	GGATC	3 cut(s)	371, 445, 635
BsrI	ACTGG	3 cut(s)	510, 518, 718
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	5 cut(s)	57, 63, 376, 450, 640
Bst2UI	CCWGG	2 cut(s)	136, 593
Bst6I	CTCTTC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	5 cut(s)	176, 198, 489, 623, 645
BstF5I	GGATG	2 cut(s)	80, 568
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	5 cut(s)	60, 66, 379, 453, 643
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	5 cut(s)	57, 63, 376, 450, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	2 cut(s)	136, 593
BstSCI	CCNGG	2 cut(s)	134, 591
BstSLI	GKGCMC	2 cut(s)	16, 131
BstV1I	GCAGC	3 cut(s)	181, 429, 625
BstX2I	RGATCY	2 cut(s)	450, 640
BstYI	RGATCY	2 cut(s)	450, 640
Bsu15I	ATCGAT	1 cut(s)	474
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	319, 579
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	2 cut(s)	80, 568
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	644
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	317, 577
ClaI	ATCGAT	1 cut(s)	474
CviAII	CATG	3 cut(s)	292, 661, 736
DdeI	CTNAG	5 cut(s)	176, 198, 489, 623, 645
DpnI	GATC	5 cut(s)	59, 65, 378, 452, 642
DpnII	GATC	5 cut(s)	57, 63, 376, 450, 640
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco72I	CACGTG	1 cut(s)	340
Eco81I	CCTNAGG	1 cut(s)	489
EcoRII	CCWGG	2 cut(s)	134, 591
Esp3I	CGTCTC	1 cut(s)	643
FaeI	CATG	3 cut(s)	295, 664, 739
FatI	CATG	3 cut(s)	291, 660, 735
Fnu4HI	GCNGC	4 cut(s)	195, 443, 484, 614
FokI	GGATG	2 cut(s)	67, 575
Fsp4HI	GCNGC	4 cut(s)	195, 443, 484, 614
FspBI	CTAG	1 cut(s)	750
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	4 cut(s)	195, 443, 484, 614
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	319, 579
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	3 cut(s)	295, 664, 739
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	2 cut(s)	345, 511
HindII	GTYRAC	2 cut(s)	345, 511
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	3 cut(s)	49, 174, 180
Hpy166II	GTNNAC	2 cut(s)	345, 511
Hpy188I	TCNGA	2 cut(s)	179, 310
Hpy188III	TCNNGA	4 cut(s)	61, 205, 380, 644
Hpy8I	GTNNAC	2 cut(s)	345, 511
HpyAV	CCTTC	4 cut(s)	63, 597, 666, 697
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	217, 550, 739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	5 cut(s)	176, 198, 489, 623, 645
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	295, 664, 739
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	5 cut(s)	57, 63, 376, 450, 640
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	3 cut(s)	181, 429, 625
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	2 cut(s)	244, 333
MalI	GATC	5 cut(s)	59, 65, 378, 452, 642
MboI	GATC	5 cut(s)	57, 63, 376, 450, 640
MboII	GAAGA	4 cut(s)	69, 424, 735, 738
MflI	RGATCY	2 cut(s)	450, 640
MhlI	GDGCHC	2 cut(s)	16, 131
MluCI	AATT	1 cut(s)	680
MlyI	GAGTC	2 cut(s)	43, 168
MnlI	CCTC	7 cut(s)	30, 39, 115, 142, 262, 265, 670
MroXI	GAANNNNTTC	1 cut(s)	690
MseI	TTAA	1 cut(s)	464
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	323
MspR9I	CCNGG	2 cut(s)	136, 593
MvaI	CCWGG	2 cut(s)	136, 593
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeII	GATC	5 cut(s)	57, 63, 376, 450, 640
NlaIII	CATG	3 cut(s)	295, 664, 739
NlaIV	GGNNCC	3 cut(s)	140, 153, 318
NmuCI	GTSAC	1 cut(s)	244
NsbI	TGCGCA	1 cut(s)	612
PdmI	GAANNNNTTC	1 cut(s)	690
PfeI	GAWTC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	196, 444, 485, 615
PleI	GAGTC	2 cut(s)	43, 168
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
PpsI	GAGTC	2 cut(s)	43, 168
Ppu21I	YACGTR	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	134, 591
PspCI	CACGTG	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	134, 591
PspN4I	GGNNCC	3 cut(s)	140, 153, 318
PspPI	GGNCC	2 cut(s)	317, 577
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	450, 640
PvuII	CAGCTG	1 cut(s)	323
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	464
SatI	GCNGC	4 cut(s)	195, 443, 484, 614
Sau3AI	GATC	5 cut(s)	57, 63, 376, 450, 640
Sau96I	GGNCC	2 cut(s)	317, 577
SchI	GAGTC	2 cut(s)	43, 168
ScrFI	CCNGG	2 cut(s)	136, 593
SduI	GDGCHC	2 cut(s)	16, 131
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	388, 446
SmoI	CTYRAG	2 cut(s)	388, 446
Sse9I	AATT	1 cut(s)	680
SsiI	CCGC	1 cut(s)	484
SspMI	CTAG	1 cut(s)	750
StyD4I	CCNGG	2 cut(s)	134, 591
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	56, 474
TasI	AATT	1 cut(s)	680
TauI	GCSGC	1 cut(s)	486
TfiI	GAWTC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	3 cut(s)	194, 442, 613
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	3 cut(s)	69, 552, 677
Van91I	CCANNNNNTGG	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	690
XspI	CTAG	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.