Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

15881861 .. 15884428

Gene Structure 2568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCAGCTCTTGGTGCAGCATTTGGGCTGTTGTTTGATGTTGTGAAGAAAGCAGTTGACAAGCCTAGTACCTTTAGATCCCTCTTTGAGAACATTAAATTTTCGCTAAAGTTTTTAAAACCAATGATCGAAAAGATAGGACAACATAACGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGTATATTATAAGAGAAATGGAGGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAGATCAGTAAGTGGAACTGCATGAAGTTTTATTACACGGATCAACTTATTGAACTAGATGGGTCTCTTAAAAGACTGTTAGATATATTGATAGTGCAAGGATTAAGAGATGGGAAGGAGACCTTGATTTTGGCAAGAAAACACCAAGACCAACTTATTGAATCGGCAAGAGATGCAAAGGAGACCTTGGTTTTGGCACAAAAGAACAATGACCAGCTTATTGAATCAGCAAAGGATGGGAAAGAGACCTTAGTTCTGGCAAGACAAAATGCGGACCAACTTATTGATTCGTCAAGAGATGGGAAGGAGACCTTGGATTTGGCAAGACAAAACAATGTCCAGCTTATTGAATCAGCAAGGGATGGAAAGGAGACCCTGGTTTTGGCCAAGAACATTAAAAGGTTTCTCAAACGAATTGAATGTTTGATGCGTTGTACTTATAAAGGAAATTCCAGATATCACAGTGGGAGCAGAGTTTCAAAAGCAAGCAGAAGCTCAGGAAGAGGTCGAATTTTGGAGACATCCAACTTAAGAGTTTACCGTTTTGCCGAGTTGAAGGATGCTACTCAGAATTTCAGGCAAGGTGAGTTTGGTTGTGGAGGCTTTGGGAGTATGTACAAGGGTTGGATGGATGAAAAGACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGAAATTTTACTCAGAAGGTGTCGAAAGCATTAAACAGTGGCAGGATTACAATACAAAACTATCAGATCTTTCCTTGGCAAAATGGGGGTCAGCTGATGGAGAGTTAGATGTGTCTACAGGGGTTTGTGGCACATTAGGATATATCGATCCAGAATACATGAGAACAGGTCATGTGTGTGTGAAGAGCGATGTGTATAGCTTCGGTGTTTTGCTGCTTGAGATTCTGACAGGGTTAAAGTCCTTCGATTTATGCCGATCTGAGGAAGAATTTAGTCTAGCTCGGTGGGCTATAAAATTTCTCTGTGATGAAACAAAGTTGCAAACCATCATAGATGAGCAGATTAAGGGCCAATATTCCTCCCAGGAAGCATTACAGACCGCACAGCTTACTCAAAAATGTTTAGAAACAGATCCTGAAAGCCGACCTTCCATGAAAGAAGTTGTGGAGCAATTGGAAAACATTCAGGCATTGAAGGGAAAACCAGACCAGTCCGAGCTTACCACTATGCAGTATTCTTCTCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

491

Amino Acids

55.21

Weight (kDa)

7.48

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 136	1.5e-26	Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase	PF00069	331 - 465	1.1e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	332 - 467	4.6e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	218, 702
AccI	GTMKAC	1 cut(s)	1061
AciI	CCGC	2 cut(s)	533, 1326
AclWI	GGATC	4 cut(s)	99, 309, 1088, 1352
AcoI	YGGCCR	2 cut(s)	645, 933
AcsI	RAATTY	7 cut(s)	125, 709, 771, 832, 950, 1214, 1241
AfaI	GTAC	3 cut(s)	97, 697, 878
AfiI	CCNNNNNNNGG	2 cut(s)	643, 1207
AflII	CTTAAG	1 cut(s)	790
AgsI	TTSAA	8 cut(s)	314, 422, 485, 611, 680, 741, 817, 1420
AjnI	CCWGG	2 cut(s)	636, 1308
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
Alw26I	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
AlwI	GGATC	4 cut(s)	99, 309, 1088, 1352
AlwNI	CAGNNNCTG	1 cut(s)	1361
AoxI	GGCC	3 cut(s)	645, 933, 1294
ApeKI	GCWGC	3 cut(s)	32, 44, 1159
ApoI	RAATTY	7 cut(s)	125, 709, 771, 832, 950, 1214, 1241
Asp700I	GAANNNNTTC	1 cut(s)	1407
AspS9I	GGNCC	2 cut(s)	535, 1294
AsuHPI	GGTGA	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	647
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbvI	GCAGC	3 cut(s)	44, 56, 1146
BccI	CCATC	8 cut(s)	314, 365, 491, 554, 617, 883, 1037, 1280
BceAI	ACGGC	1 cut(s)	920
BciT130I	CCWGG	2 cut(s)	638, 1310
BcoDI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BfaI	CTAG	3 cut(s)	93, 317, 1223
BfmI	CTRYAG	1 cut(s)	1062
BfrI	CTTAAG	1 cut(s)	790
BglII	AGATCT	1 cut(s)	1012
BisI	GCNGC	3 cut(s)	33, 45, 1160
BlsI	GCNGC	3 cut(s)	34, 46, 1161
Bme1390I	CCNGG	2 cut(s)	638, 1310
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	2 cut(s)	535, 1294
BmrFI	CCNGG	2 cut(s)	638, 1310
BmsI	GCATC	3 cut(s)	424, 678, 811
Bpu10I	CCTNAGC	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	1184
Bsa29I	ATCGAT	1 cut(s)	1092
BsaI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsaJI	CCNNGG	5 cut(s)	447, 573, 636, 1020, 1308
Bsc4I	CCNNNNNNNGG	2 cut(s)	643, 1207
Bse1I	ACTGG	2 cut(s)	931, 1435
BseBI	CCWGG	2 cut(s)	638, 1310
BseCI	ATCGAT	1 cut(s)	1092
BseDI	CCNNGG	5 cut(s)	447, 573, 636, 1020, 1308
BseGI	GGATG	6 cut(s)	502, 628, 782, 826, 894, 898
BseLI	CCNNNNNNNGG	2 cut(s)	643, 1207
BseMII	CTCAG	4 cut(s)	771, 842, 972, 1197
BseNI	ACTGG	2 cut(s)	931, 1435
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	44, 56, 1146
BsgI	GTGCAG	2 cut(s)	51, 63
BshFI	GGCC	3 cut(s)	647, 935, 1296
BshVI	ATCGAT	1 cut(s)	1092
BslI	CCNNNNNNNGG	2 cut(s)	643, 1207
BsmAI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BsnI	GGCC	3 cut(s)	647, 935, 1296
Bso31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
BspACI	CCGC	2 cut(s)	533, 1326
BspANI	GGCC	3 cut(s)	647, 935, 1296
BspCNI	CTCAG	4 cut(s)	770, 841, 971, 1198
BspDI	ATCGAT	1 cut(s)	1092
BspPI	GGATC	4 cut(s)	99, 309, 1088, 1352
BspQI	GCTCTTC	1 cut(s)	1124
BspTI	CTTAAG	1 cut(s)	790
BspTNI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	931, 1435
BssECI	CCNNGG	5 cut(s)	447, 573, 636, 1020, 1308
BssMI	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
BssT1I	CCWWGG	3 cut(s)	447, 573, 1020
Bst2UI	CCWGG	2 cut(s)	638, 1310
Bst4CI	ACNGT	4 cut(s)	339, 725, 803, 984
Bst6I	CTCTTC	2 cut(s)	757, 1124
BstAFI	CTTAAG	1 cut(s)	790
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	748, 906
BstDEI	CTNAG	6 cut(s)	511, 757, 828, 915, 958, 1206
BstF5I	GGATG	6 cut(s)	502, 628, 782, 826, 894, 898
BstKTI	GATC	8 cut(s)	107, 156, 267, 304, 1015, 1096, 1205, 1360
BstMAI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BstMBI	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 434, 1232
BstNI	CCWGG	2 cut(s)	638, 1310
BstSCI	CCNGG	2 cut(s)	636, 1308
BstSFI	CTRYAG	1 cut(s)	1062
BstV1I	GCAGC	3 cut(s)	44, 56, 1146
BstX2I	RGATCY	3 cut(s)	104, 1012, 1357
BstYI	RGATCY	3 cut(s)	104, 1012, 1357
Bsu15I	ATCGAT	1 cut(s)	1092
BsuRI	GGCC	3 cut(s)	647, 935, 1296
BsuTUI	ATCGAT	1 cut(s)	1092
BtgZI	GCGATG	1 cut(s)	1149
BtsCI	GGATG	6 cut(s)	502, 628, 782, 826, 894, 898
BtsIMutI	CAGTG	3 cut(s)	730, 924, 989
Cac8I	GCNNGC	2 cut(s)	748, 906
CaiI	CAGNNNCTG	1 cut(s)	1361
Cfr13I	GGNCC	2 cut(s)	535, 1294
ClaI	ATCGAT	1 cut(s)	1092
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	3 cut(s)	96, 696, 877
CviAII	CATG	4 cut(s)	283, 1105, 1118, 1378
CviQI	GTAC	3 cut(s)	96, 696, 877
DdeI	CTNAG	6 cut(s)	511, 757, 828, 915, 958, 1206
DpnI	GATC	8 cut(s)	106, 155, 266, 303, 1014, 1095, 1204, 1359
DpnII	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	2 cut(s)	645, 933
Eam1104I	CTCTTC	2 cut(s)	757, 1124
EarI	CTCTTC	2 cut(s)	757, 1124
Eco130I	CCWWGG	3 cut(s)	447, 573, 1020
Eco31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
Eco32I	GATATC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	535
EcoRII	CCWGG	2 cut(s)	636, 1308
EcoRV	GATATC	1 cut(s)	719
EcoT14I	CCWWGG	3 cut(s)	447, 573, 1020
ErhI	CCWWGG	3 cut(s)	447, 573, 1020
FaeI	CATG	4 cut(s)	286, 1108, 1121, 1381
FatI	CATG	4 cut(s)	282, 1104, 1117, 1377
FblI	GTMKAC	1 cut(s)	1061
Fnu4HI	GCNGC	3 cut(s)	33, 45, 1160
FokI	GGATG	6 cut(s)	509, 635, 769, 833, 901, 905
Fsp4HI	GCNGC	3 cut(s)	33, 45, 1160
FspBI	CTAG	3 cut(s)	93, 317, 1223
GluI	GCNGC	3 cut(s)	33, 45, 1160
HaeIII	GGCC	3 cut(s)	647, 935, 1296
HgaI	GACGC	1 cut(s)	910
Hin1II	CATG	4 cut(s)	286, 1108, 1121, 1381
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	5 cut(s)	422, 485, 548, 611, 1168
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	3 cut(s)	85, 799, 1062
Hpy188I	TCNGA	6 cut(s)	831, 961, 1012, 1173, 1207, 1441
Hpy188III	TCNNGA	8 cut(s)	250, 555, 714, 759, 946, 1097, 1361, 1473
Hpy8I	GTNNAC	3 cut(s)	85, 799, 1062
HpyAV	CCTTC	8 cut(s)	370, 559, 811, 921, 956, 1198, 1383, 1414
HpyCH4III	ACNGT	4 cut(s)	339, 725, 803, 984
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	8 cut(s)	32, 44, 282, 358, 437, 908, 1267, 1456
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 434, 1232
HpyF3I	CTNAG	6 cut(s)	511, 757, 828, 915, 958, 1206
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	286, 1108, 1121, 1381
Kzo9I	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
LguI	GCTCTTC	1 cut(s)	1124
LmnI	GCTCC	2 cut(s)	729, 1393
Lsp1109I	GCAGC	3 cut(s)	44, 56, 1146
LweI	GCATC	3 cut(s)	424, 678, 811
MaeI	CTAG	3 cut(s)	93, 317, 1223
MaeII	ACGT	1 cut(s)	177
MalI	GATC	8 cut(s)	106, 155, 266, 303, 1014, 1095, 1204, 1359
MboI	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
MboII	GAAGA	6 cut(s)	85, 212, 774, 1141, 1223, 1455
MfeI	CAATTG	1 cut(s)	1397
MflI	RGATCY	3 cut(s)	104, 1012, 1357
MlsI	TGGCCA	1 cut(s)	647
MluNI	TGGCCA	1 cut(s)	647
MmeI	TCCRAC	2 cut(s)	810, 866
MnlI	CCTC	7 cut(s)	119, 223, 226, 758, 854, 1201, 1315
Mox20I	TGGCCA	1 cut(s)	647
MroXI	GAANNNNTTC	1 cut(s)	1407
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	9 cut(s)	123, 143, 330, 365, 657, 791, 978, 1181, 1290
MslI	CAYNNNNRTG	2 cut(s)	929, 1122
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	1040
MspCI	CTTAAG	1 cut(s)	790
MspR9I	CCNGG	2 cut(s)	638, 1310
MunI	CAATTG	1 cut(s)	1397
MvaI	CCWGG	2 cut(s)	638, 1310
MwoI	GCNNNNNNNGC	3 cut(s)	41, 434, 1232
NdeII	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
NlaIII	CATG	4 cut(s)	286, 1108, 1121, 1381
NmeAIII	GCCGAG	1 cut(s)	835
PciSI	GCTCTTC	1 cut(s)	1124
PdmI	GAANNNNTTC	1 cut(s)	1407
PfeI	GAWTC	5 cut(s)	422, 485, 548, 611, 1168
PkrI	GCNGC	3 cut(s)	34, 46, 1161
PsiI	TTATAA	2 cut(s)	218, 702
Psp6I	CCWGG	2 cut(s)	636, 1308
PspGI	CCWGG	2 cut(s)	636, 1308
PspPI	GGNCC	2 cut(s)	535, 1294
PstNI	CAGNNNCTG	1 cut(s)	1361
PsuI	RGATCY	3 cut(s)	104, 1012, 1357
PvuII	CAGCTG	1 cut(s)	1040
RsaI	GTAC	3 cut(s)	97, 697, 878
RsaNI	GTAC	3 cut(s)	96, 696, 877
RseI	CAYNNNNRTG	2 cut(s)	929, 1122
SapI	GCTCTTC	1 cut(s)	1124
SaqAI	TTAA	9 cut(s)	123, 143, 330, 365, 657, 791, 978, 1181, 1290
SatI	GCNGC	3 cut(s)	33, 45, 1160
Sau3AI	GATC	8 cut(s)	104, 153, 264, 301, 1012, 1093, 1202, 1357
Sau96I	GGNCC	2 cut(s)	535, 1294
ScrFI	CCNGG	2 cut(s)	638, 1310
SfaNI	GCATC	3 cut(s)	424, 678, 811
SfcI	CTRYAG	1 cut(s)	1062
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	2 cut(s)	929, 1122
SmlI	CTYRAG	2 cut(s)	790, 1163
SmoI	CTYRAG	2 cut(s)	790, 1163
SsiI	CCGC	2 cut(s)	533, 1326
SspI	AATATT	1 cut(s)	1301
SspMI	CTAG	3 cut(s)	93, 317, 1223
StyD4I	CCNGG	2 cut(s)	636, 1308
StyI	CCWWGG	3 cut(s)	447, 573, 1020
TaaI	ACNGT	4 cut(s)	339, 725, 803, 984
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	5 cut(s)	156, 769, 969, 1092, 1191
TatI	WGTACW	2 cut(s)	695, 876
TfiI	GAWTC	5 cut(s)	422, 485, 548, 611, 1168
Tru1I	TTAA	9 cut(s)	123, 143, 330, 365, 657, 791, 978, 1181, 1290
Tru9I	TTAA	9 cut(s)	123, 143, 330, 365, 657, 791, 978, 1181, 1290
TscAI	CASTG	3 cut(s)	730, 931, 989
TseI	GCWGC	3 cut(s)	32, 44, 1159
TspDTI	ATGAA	5 cut(s)	213, 299, 909, 1269, 1394
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	730, 931, 989
Vha464I	CTTAAG	1 cut(s)	790
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	7 cut(s)	125, 709, 771, 832, 950, 1214, 1241
XmiI	GTMKAC	1 cut(s)	1061
XmnI	GAANNNNTTC	1 cut(s)	1407
XspI	CTAG	3 cut(s)	93, 317, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.