Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

16280542 .. 16284327

Gene Structure 3786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG171400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCTTTAGGGGGTGCAGCTCTTGGTGCAGCATTTGGGCTGTTGTTTGATGTTGTGAAGAAAGCAGTTGACAAGCCTAGCATTTCTGTCGCGGAACCACTTGCTTGGGACATCAGACTCAAAATAGCTGTTGGAGCTGCTCGGGGATTAAATTTCTTGCACAGTATACAAATCACACACAGAGATGTCAAACCCTCAAATATATTGCTTGATGAGGATTACAATACAAAACTATCAGATCTTTCCTTGGCAAAATGGGGGTCAGCTGATGGAGAGTTAGATGTGTCTACAGGGGTTTGTGGCACATTAGGATATATCGATCCAGAATACATGAGAACAGGTCATGTGTGTGTGAAGAGCGATGTGTATAGCTTCGGTGTTTTGCTGCTTGAGATTCTGACAGGGTTAAAGTCCTTCGATTTATGCCGATCTGAGGAAGAATTTAGTCTAGCTCGGTGGGCTATAAAATTTCTCTGTGATGAAACAAAGTTGCAAACCATCATAGATGAGCAGATTAAGGGCCAATATTCCTCCCAGGAAGCATTACAGACCGCACAGCTTACTCAAAAATGTTTAGAAACAGATCCTGAAAGCCGACCTTCCATGAAAGAAGTTGTGGAGCAATTGGAAAACATTCAGGCATTGAAGGGAAAACCAGACCAGTCCGAGCTTACCACTATGCAGTATTCTTCTCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

233

Amino Acids

25.63

Weight (kDa)

4.91

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	31 - 209	2e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	41 - 207	2.1e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	166, 287
AccII	CGCG	1 cut(s)	92
AciI	CCGC	2 cut(s)	92, 552
AclWI	GGATC	2 cut(s)	314, 578
AcsI	RAATTY	3 cut(s)	151, 440, 467
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	646
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	8 cut(s)	20, 128, 137, 266, 372, 452, 559, 670
AluI	AGCT	8 cut(s)	20, 128, 137, 266, 372, 452, 559, 670
AlwI	GGATC	2 cut(s)	314, 578
AlwNI	CAGNNNCTG	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	4 cut(s)	17, 29, 137, 385
ApoI	RAATTY	3 cut(s)	151, 440, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	29, 41, 124, 372
BccI	CCATC	2 cut(s)	263, 506
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	536
BfaI	CTAG	2 cut(s)	78, 449
BfmI	CTRYAG	1 cut(s)	288
BglII	AGATCT	1 cut(s)	238
BisI	GCNGC	4 cut(s)	18, 30, 138, 386
BlsI	GCNGC	4 cut(s)	19, 31, 139, 387
Bme1390I	CCNGG	1 cut(s)	536
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	246, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	246, 534
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	661
BseXI	GCAGC	4 cut(s)	29, 41, 124, 372
BsgI	GTGCAG	2 cut(s)	36, 48
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	318
BsiHKCI	CYCGRG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	238, 319, 428, 583
BspACI	CCGC	2 cut(s)	92, 552
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	1 cut(s)	424
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	314, 578
BspQI	GCTCTTC	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	2 cut(s)	246, 534
BssMI	GATC	4 cut(s)	238, 319, 428, 583
BssNAI	GTATAC	1 cut(s)	167
BssT1I	CCWWGG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	4 cut(s)	241, 322, 431, 586
BstMBI	GATC	4 cut(s)	238, 319, 428, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 134, 458
BstNI	CCWGG	1 cut(s)	536
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	4 cut(s)	29, 41, 124, 372
BstX2I	RGATCY	2 cut(s)	238, 583
BstXI	CCANNNNNNTGG	1 cut(s)	105
BstYI	RGATCY	2 cut(s)	238, 583
BstZ17I	GTATAC	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	522
BsuTUI	ATCGAT	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	520
ClaI	ATCGAT	1 cut(s)	318
CviAII	CATG	3 cut(s)	331, 344, 604
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	4 cut(s)	240, 321, 430, 585
DpnII	GATC	4 cut(s)	238, 319, 428, 583
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	334, 347, 607
FalI	AAGNNNNNCTT	2 cut(s)	583, 615
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	330, 343, 603
FblI	GTMKAC	2 cut(s)	166, 287
Fnu4HI	GCNGC	4 cut(s)	18, 30, 138, 386
Fsp4HI	GCNGC	4 cut(s)	18, 30, 138, 386
FspBI	CTAG	2 cut(s)	78, 449
GluI	GCNGC	4 cut(s)	18, 30, 138, 386
HaeIII	GGCC	1 cut(s)	522
Hin1II	CATG	3 cut(s)	334, 347, 607
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	117, 394
Hpy166II	GTNNAC	3 cut(s)	70, 167, 288
Hpy188I	TCNGA	5 cut(s)	116, 238, 399, 433, 667
Hpy188III	TCNNGA	3 cut(s)	323, 587, 699
Hpy8I	GTNNAC	3 cut(s)	70, 167, 288
HpyAV	CCTTC	3 cut(s)	424, 609, 640
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	5 cut(s)	17, 29, 160, 493, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 134, 458
HpyF3I	CTNAG	1 cut(s)	432
Hsp92II	CATG	3 cut(s)	334, 347, 607
Kzo9I	GATC	4 cut(s)	238, 319, 428, 583
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	2 cut(s)	134, 619
Lsp1109I	GCAGC	4 cut(s)	29, 41, 124, 372
MaeI	CTAG	2 cut(s)	78, 449
MalI	GATC	4 cut(s)	240, 321, 430, 585
MboI	GATC	4 cut(s)	238, 319, 428, 583
MboII	GAAGA	4 cut(s)	70, 367, 449, 681
MfeI	CAATTG	1 cut(s)	623
MflI	RGATCY	2 cut(s)	238, 583
MluCI	AATT	4 cut(s)	151, 440, 467, 623
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	4 cut(s)	205, 208, 427, 541
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	3 cut(s)	149, 407, 516
MslI	CAYNNNNRTG	2 cut(s)	183, 348
MspA1I	CMGCKG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	623
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	26, 134, 458
NdeII	GATC	4 cut(s)	238, 319, 428, 583
NlaIII	CATG	3 cut(s)	334, 347, 607
NlaIV	GGNNCC	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	19, 31, 139, 387
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	520
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	238, 583
PvuII	CAGCTG	1 cut(s)	266
RseI	CAYNNNNRTG	2 cut(s)	183, 348
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	149, 407, 516
SatI	GCNGC	4 cut(s)	18, 30, 138, 386
Sau3AI	GATC	4 cut(s)	238, 319, 428, 583
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	536
SfcI	CTRYAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	2 cut(s)	183, 348
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	151, 440, 467, 623
SsiI	CCGC	2 cut(s)	92, 552
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	2 cut(s)	78, 449
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	318, 417
TasI	AATT	4 cut(s)	151, 440, 467, 623
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	3 cut(s)	149, 407, 516
Tru9I	TTAA	3 cut(s)	149, 407, 516
TseI	GCWGC	4 cut(s)	17, 29, 137, 385
TspDTI	ATGAA	2 cut(s)	495, 620
XapI	RAATTY	3 cut(s)	151, 440, 467
XmiI	GTMKAC	2 cut(s)	166, 287
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	2 cut(s)	78, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.