Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002316.1

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Reverse (-)

170130 .. 172449

Gene Structure 2320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002316.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atggttatagtaggggagtttgtagggggtgcagctcttggtgcagcatttgggctgttgtttgatgttgtgaagaaagcagttgacaagcctagtacctttagatccctctttgagaacattaaattttcgcttaagtttttaaaaccaatgatcgaaaagataggagaacataacgtggaattgggtctcccagatgaagaaataaagtatattataagagaaatggaggagggcgtaaagcttgtccagaagtcatcaaagatcagtaagtggaactgcatgaagttttattacaaggatcaacttattgaactagatgggtctcttaaaagactgttagatatattgatagtgcaaggattaagagatgggaaggagaccttgattttggcaagaaaacaccaagaccaacttattgaatcgtcaagagatgcaaaggagaccttggttttggcacaaaagaacaatgaccagcttattgaatcagcaaaggatgggaaagagaccttagttctggcaagaaaaaatgcggaccaacttattgattcgtcaagagatgggaaggagaccttggatttggcaagacaagacaatgcccaacttattgaatcagcaagggatggaaaggagaccctggttttgaccaagaacattaaaaggtttctcaaacgaattgaatgtttggtgcgttgtacttataaaggaaattccagatatcacagtgggagcagagtttcaaaagcaagcagaagctcaggaagaggtagaattttggagacatccaacttaagagtttaccgttttgccgagttgaaggatgctactcagaatttcaggcaaggtgagtttggttgtggaggttttgggagtatgtacaagggttggatggatgaaaagacgcttgcaccttctaaggttggcactggaatggccgttgctgtcaagacattttactcagaaaatttttccttggcaaaatgggggtcagctgatggagagttagatgtgtcaacaggggtttgtggcacaataggatatatcgatctagaatacctgagaataggtcatgtgtgtgtgaagagctgtgtgtatagcttcggtgttttgctgcttgagattctgacaggattaaagtccttcgatttaagccgatctgaggaagaattgagtctggctaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

394

Amino Acids

44.08

Weight (kDa)

8.84

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	218, 702
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	2 cut(s)	99, 309
AcoI	YGGCCR	1 cut(s)	933
AcsI	RAATTY	5 cut(s)	125, 709, 771, 832, 964
AfaI	GTAC	3 cut(s)	97, 697, 878
AfiI	CCNNNNNNNGG	1 cut(s)	1159
AflII	CTTAAG	2 cut(s)	134, 790
AgsI	TTSAA	7 cut(s)	314, 422, 485, 611, 680, 741, 817
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	7 cut(s)	35, 244, 478, 756, 992, 1086, 1098
AluI	AGCT	7 cut(s)	35, 244, 478, 756, 992, 1086, 1098
Alw26I	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
AlwI	GGATC	2 cut(s)	99, 309
AoxI	GGCC	1 cut(s)	933
ApeKI	GCWGC	3 cut(s)	32, 44, 1111
ApoI	RAATTY	5 cut(s)	125, 709, 771, 832, 964
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	857
AvaII	GGWCC	1 cut(s)	535
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbvI	GCAGC	3 cut(s)	44, 56, 1098
BccI	CCATC	7 cut(s)	314, 365, 491, 554, 617, 883, 989
BceAI	ACGGC	1 cut(s)	920
BciT130I	CCWGG	1 cut(s)	638
BcoDI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BfaI	CTAG	4 cut(s)	93, 317, 1049, 1179
BfrI	CTTAAG	2 cut(s)	134, 790
BisI	GCNGC	3 cut(s)	33, 45, 1112
BlsI	GCNGC	3 cut(s)	34, 46, 1113
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	424, 811
Bpu10I	CCTNAGC	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	1136
Bsa29I	ATCGAT	1 cut(s)	1044
BsaI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsaJI	CCNNGG	4 cut(s)	447, 573, 636, 972
Bsc4I	CCNNNNNNNGG	1 cut(s)	1159
Bse1I	ACTGG	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	638
BseCI	ATCGAT	1 cut(s)	1044
BseDI	CCNNGG	4 cut(s)	447, 573, 636, 972
BseGI	GGATG	6 cut(s)	502, 628, 782, 826, 894, 898
BseLI	CCNNNNNNNGG	1 cut(s)	1159
BseMII	CTCAG	5 cut(s)	771, 842, 972, 1049, 1149
BseNI	ACTGG	1 cut(s)	931
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	44, 56, 1098
BsgI	GTGCAG	2 cut(s)	51, 63
BshFI	GGCC	1 cut(s)	935
BshVI	ATCGAT	1 cut(s)	1044
BslI	CCNNNNNNNGG	1 cut(s)	1159
BsmAI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BsnI	GGCC	1 cut(s)	935
Bso31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	1 cut(s)	935
BspCNI	CTCAG	5 cut(s)	770, 841, 971, 1050, 1150
BspDI	ATCGAT	1 cut(s)	1044
BspPI	GGATC	2 cut(s)	99, 309
BspQI	GCTCTTC	1 cut(s)	1076
BspTI	CTTAAG	2 cut(s)	134, 790
BspTNI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	1 cut(s)	931
BssECI	CCNNGG	4 cut(s)	447, 573, 636, 972
BssMI	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
BssT1I	CCWWGG	3 cut(s)	447, 573, 972
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	3 cut(s)	339, 725, 803
Bst6I	CTCTTC	2 cut(s)	757, 1076
BstAFI	CTTAAG	2 cut(s)	134, 790
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	748, 906
BstDEI	CTNAG	7 cut(s)	511, 757, 828, 915, 958, 1058, 1158
BstF5I	GGATG	6 cut(s)	502, 628, 782, 826, 894, 898
BstKTI	GATC	6 cut(s)	107, 156, 267, 304, 1048, 1157
BstMAI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BstMBI	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	636
BstV1I	GCAGC	3 cut(s)	44, 56, 1098
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	1044
BsuRI	GGCC	1 cut(s)	935
BsuTUI	ATCGAT	1 cut(s)	1044
BtsCI	GGATG	6 cut(s)	502, 628, 782, 826, 894, 898
BtsIMutI	CAGTG	2 cut(s)	730, 924
Cac8I	GCNNGC	2 cut(s)	748, 906
Cfr13I	GGNCC	1 cut(s)	535
ClaI	ATCGAT	1 cut(s)	1044
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	3 cut(s)	96, 696, 877
CviAII	CATG	2 cut(s)	283, 1070
CviQI	GTAC	3 cut(s)	96, 696, 877
DdeI	CTNAG	7 cut(s)	511, 757, 828, 915, 958, 1058, 1158
DpnI	GATC	6 cut(s)	106, 155, 266, 303, 1047, 1156
DpnII	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	933
Eam1104I	CTCTTC	2 cut(s)	757, 1076
EarI	CTCTTC	2 cut(s)	757, 1076
Eco130I	CCWWGG	3 cut(s)	447, 573, 972
Eco31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
Eco32I	GATATC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	719
EcoT14I	CCWWGG	3 cut(s)	447, 573, 972
ErhI	CCWWGG	3 cut(s)	447, 573, 972
FaeI	CATG	2 cut(s)	286, 1073
FalI	AAGNNNNNCTT	8 cut(s)	368, 400, 399, 431, 431, 463, 557, 589
FatI	CATG	2 cut(s)	282, 1069
Fnu4HI	GCNGC	3 cut(s)	33, 45, 1112
FokI	GGATG	6 cut(s)	509, 635, 769, 833, 901, 905
Fsp4HI	GCNGC	3 cut(s)	33, 45, 1112
FspBI	CTAG	4 cut(s)	93, 317, 1049, 1179
GluI	GCNGC	3 cut(s)	33, 45, 1112
HaeIII	GGCC	1 cut(s)	935
HgaI	GACGC	1 cut(s)	910
Hin1II	CATG	2 cut(s)	286, 1073
HincII	GTYRAC	2 cut(s)	85, 1014
HindII	GTYRAC	2 cut(s)	85, 1014
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	6 cut(s)	422, 485, 548, 611, 1120, 1171
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	3 cut(s)	85, 799, 1014
Hpy188I	TCNGA	4 cut(s)	831, 961, 1125, 1159
Hpy188III	TCNNGA	7 cut(s)	250, 429, 555, 714, 759, 946, 1049
Hpy8I	GTNNAC	3 cut(s)	85, 799, 1014
HpyAV	CCTTC	5 cut(s)	370, 559, 811, 921, 1150
HpyCH4III	ACNGT	3 cut(s)	339, 725, 803
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	6 cut(s)	32, 44, 282, 358, 437, 908
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	7 cut(s)	511, 757, 828, 915, 958, 1058, 1158
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	286, 1073
Kzo9I	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
LguI	GCTCTTC	1 cut(s)	1076
LmnI	GCTCC	1 cut(s)	729
Lsp1109I	GCAGC	3 cut(s)	44, 56, 1098
LweI	GCATC	2 cut(s)	424, 811
MaeI	CTAG	4 cut(s)	93, 317, 1049, 1179
MaeII	ACGT	1 cut(s)	177
MalI	GATC	6 cut(s)	106, 155, 266, 303, 1047, 1156
MboI	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
MboII	GAAGA	5 cut(s)	85, 212, 774, 1093, 1175
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	8 cut(s)	125, 182, 675, 709, 771, 832, 964, 1166
MlyI	GAGTC	1 cut(s)	1180
MmeI	TCCRAC	2 cut(s)	810, 866
MnlI	CCTC	6 cut(s)	119, 223, 226, 758, 854, 1153
MseI	TTAA	9 cut(s)	123, 135, 143, 330, 365, 657, 791, 1133, 1148
MslI	CAYNNNNRTG	2 cut(s)	929, 1074
MspA1I	CMGCKG	1 cut(s)	992
MspCI	CTTAAG	2 cut(s)	134, 790
MspR9I	CCNGG	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	1 cut(s)	41
NdeII	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
NlaIII	CATG	2 cut(s)	286, 1073
NmeAIII	GCCGAG	1 cut(s)	835
PciSI	GCTCTTC	1 cut(s)	1076
PfeI	GAWTC	5 cut(s)	422, 485, 548, 611, 1120
PkrI	GCNGC	3 cut(s)	34, 46, 1113
PleI	GAGTC	1 cut(s)	1179
PpsI	GAGTC	1 cut(s)	1179
PsiI	TTATAA	2 cut(s)	218, 702
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspPI	GGNCC	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	992
RsaI	GTAC	3 cut(s)	97, 697, 878
RsaNI	GTAC	3 cut(s)	96, 696, 877
RseI	CAYNNNNRTG	2 cut(s)	929, 1074
SapI	GCTCTTC	1 cut(s)	1076
SaqAI	TTAA	9 cut(s)	123, 135, 143, 330, 365, 657, 791, 1133, 1148
SatI	GCNGC	3 cut(s)	33, 45, 1112
Sau3AI	GATC	6 cut(s)	104, 153, 264, 301, 1045, 1154
Sau96I	GGNCC	1 cut(s)	535
SchI	GAGTC	1 cut(s)	1180
ScrFI	CCNGG	1 cut(s)	638
SfaNI	GCATC	2 cut(s)	424, 811
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	2 cut(s)	929, 1074
SmlI	CTYRAG	3 cut(s)	134, 790, 1115
SmoI	CTYRAG	3 cut(s)	134, 790, 1115
Sse9I	AATT	8 cut(s)	125, 182, 675, 709, 771, 832, 964, 1166
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	4 cut(s)	93, 317, 1049, 1179
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	3 cut(s)	447, 573, 972
TaaI	ACNGT	3 cut(s)	339, 725, 803
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	156, 1044, 1143
TasI	AATT	8 cut(s)	125, 182, 675, 709, 771, 832, 964, 1166
TatI	WGTACW	2 cut(s)	695, 876
TfiI	GAWTC	5 cut(s)	422, 485, 548, 611, 1120
Tru1I	TTAA	9 cut(s)	123, 135, 143, 330, 365, 657, 791, 1133, 1148
Tru9I	TTAA	9 cut(s)	123, 135, 143, 330, 365, 657, 791, 1133, 1148
TscAI	CASTG	2 cut(s)	730, 931
TseI	GCWGC	3 cut(s)	32, 44, 1111
TspDTI	ATGAA	3 cut(s)	213, 299, 909
TspRI	CASTG	2 cut(s)	730, 931
Vha464I	CTTAAG	2 cut(s)	134, 790
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	5 cut(s)	125, 709, 771, 832, 964
XbaI	TCTAGA	1 cut(s)	1048
XspI	CTAG	4 cut(s)	93, 317, 1049, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.