Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

15598700 .. 15599868

Gene Structure 1169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG177500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTGTTCCTTGTTATTTAATACTGCAGCTGGAGCTGAACTTCCTAGGAAGGGCATTTCTGTCGCGGAACCACTTGCTTGGGACATCAGACTCAAAATAGCTGTTGGAGCTGCTCGGGGATTAAATTTCTTGCACAGTATACAAATCACACACAGAGATGTCAAACCCTCAAATATATTGCTTGATGAGGATTACAATACAAAACTATCAGATCTTTCCTTGGCAAAATGGGGGTCAGCTGATGGAGAGTTAGATGTGTCTACAGGGGTTTGTGGCACATTAGGATATATCGATCCAGAATACATGAGAACAGGTCATGTGTGTGTGAAGAGCGATGTGTATAGCTTCGGTGTTTTGCTGCTTGAGATTCTGACAGGGTTAAAGTCCTTCGATTTATGCCGATCTGAGGAAGAATTTAGTCTAGCTCGGTGGGCTATAAAATTTCTCTGTGATGAAACAAAGTTGCAAACCATCATAGATGAGCAGATTAAGGGCCAATATTCCTCCCAGGAAGCATTACAGACCGCACAGCTTACTCAAAAATGTTTAGAAACAGATCCTGAAAGCCGACCTTCCATGAAAGAAGTTGTGGAGCAATTGGAAAACATTCAGGCATTGAAGGGAAAACCAGACCAGTCCGAGCTTACCACTATGCAGTATTCTTCTCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

224

Amino Acids

24.85

Weight (kDa)

4.91

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 200	2.7e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	32 - 198	2.1e-29	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	139, 260
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	65, 525
AclWI	GGATC	2 cut(s)	287, 551
AcsI	RAATTY	3 cut(s)	124, 413, 440
AfiI	CCNNNNNNNGG	2 cut(s)	50, 406
AgsI	TTSAA	1 cut(s)	619
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	9 cut(s)	29, 35, 101, 110, 239, 345, 425, 532, 643
AluI	AGCT	9 cut(s)	29, 35, 101, 110, 239, 345, 425, 532, 643
AlwI	GGATC	2 cut(s)	287, 551
AlwNI	CAGNNNCTG	1 cut(s)	560
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	3 cut(s)	26, 110, 358
ApoI	RAATTY	3 cut(s)	124, 413, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
Asp700I	GAANNNNTTC	1 cut(s)	606
AspA2I	CCTAGG	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	114
AvrII	CCTAGG	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	38, 97, 345
BccI	CCATC	2 cut(s)	236, 479
BcgI	CGANNNNNNTGC	2 cut(s)	43, 77
BciT130I	CCWGG	1 cut(s)	509
BfaI	CTAG	2 cut(s)	45, 422
BfmI	CTRYAG	2 cut(s)	24, 261
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	3 cut(s)	27, 111, 359
BlnI	CCTAGG	1 cut(s)	44
BlsI	GCNGC	3 cut(s)	28, 112, 360
Bme1390I	CCNGG	1 cut(s)	509
BmeT110I	CYCGRG	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	44, 219, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 406
Bse1I	ACTGG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	44, 219, 507
BseLI	CCNNNNNNNGG	2 cut(s)	50, 406
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	634
BseXI	GCAGC	3 cut(s)	38, 97, 345
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	495
BshVI	ATCGAT	1 cut(s)	291
BsiHKCI	CYCGRG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	50, 406
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	495
BsoBI	CYCGRG	1 cut(s)	114
Bsp143I	GATC	4 cut(s)	211, 292, 401, 556
BspACI	CCGC	2 cut(s)	65, 525
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	397
BspDI	ATCGAT	1 cut(s)	291
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	69
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	2 cut(s)	287, 551
BspQI	GCTCTTC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	3 cut(s)	44, 219, 507
BssMI	GATC	4 cut(s)	211, 292, 401, 556
BssNAI	GTATAC	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	44, 219
Bst1107I	GTATAC	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	1 cut(s)	323
BstDEI	CTNAG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	4 cut(s)	214, 295, 404, 559
BstMBI	GATC	4 cut(s)	211, 292, 401, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 107, 431
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	24, 261
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	38, 97, 345
BstX2I	RGATCY	2 cut(s)	211, 556
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	2 cut(s)	211, 556
BstZ17I	GTATAC	1 cut(s)	140
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	495
BsuTUI	ATCGAT	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	560
Cfr13I	GGNCC	1 cut(s)	493
ClaI	ATCGAT	1 cut(s)	291
CviAII	CATG	3 cut(s)	304, 317, 577
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	4 cut(s)	213, 294, 403, 558
DpnII	GATC	4 cut(s)	211, 292, 401, 556
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	2 cut(s)	44, 219
Eco88I	CYCGRG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	2 cut(s)	44, 219
ErhI	CCWWGG	2 cut(s)	44, 219
FaeI	CATG	3 cut(s)	307, 320, 580
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	3 cut(s)	303, 316, 576
FblI	GTMKAC	2 cut(s)	139, 260
Fnu4HI	GCNGC	3 cut(s)	27, 111, 359
Fsp4HI	GCNGC	3 cut(s)	27, 111, 359
FspBI	CTAG	2 cut(s)	45, 422
GluI	GCNGC	3 cut(s)	27, 111, 359
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	307, 320, 580
HinfI	GANTC	2 cut(s)	90, 367
Hpy166II	GTNNAC	2 cut(s)	140, 261
Hpy188I	TCNGA	5 cut(s)	89, 211, 372, 406, 640
Hpy188III	TCNNGA	3 cut(s)	296, 560, 672
Hpy8I	GTNNAC	2 cut(s)	140, 261
HpyAV	CCTTC	4 cut(s)	43, 397, 582, 613
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	4 cut(s)	26, 133, 466, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 107, 431
HpyF3I	CTNAG	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	307, 320, 580
Kzo9I	GATC	4 cut(s)	211, 292, 401, 556
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	3 cut(s)	32, 107, 592
Lsp1109I	GCAGC	3 cut(s)	38, 97, 345
MaeI	CTAG	2 cut(s)	45, 422
MalI	GATC	4 cut(s)	213, 294, 403, 558
MboI	GATC	4 cut(s)	211, 292, 401, 556
MboII	GAAGA	3 cut(s)	340, 422, 654
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	2 cut(s)	211, 556
MluCI	AATT	4 cut(s)	124, 413, 440, 596
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	85
MnlI	CCTC	4 cut(s)	178, 181, 400, 514
MroXI	GAANNNNTTC	1 cut(s)	606
MseI	TTAA	4 cut(s)	18, 122, 380, 489
MslI	CAYNNNNRTG	2 cut(s)	156, 321
MspA1I	CMGCKG	2 cut(s)	29, 239
MspR9I	CCNGG	1 cut(s)	509
MunI	CAATTG	1 cut(s)	596
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	32, 107, 431
NdeII	GATC	4 cut(s)	211, 292, 401, 556
NlaIII	CATG	3 cut(s)	307, 320, 580
NlaIV	GGNNCC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	28, 112, 360
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	211, 556
PvuII	CAGCTG	2 cut(s)	29, 239
RseI	CAYNNNNRTG	2 cut(s)	156, 321
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	4 cut(s)	18, 122, 380, 489
SatI	GCNGC	3 cut(s)	27, 111, 359
Sau3AI	GATC	4 cut(s)	211, 292, 401, 556
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	509
SfcI	CTRYAG	2 cut(s)	24, 261
SmiMI	CAYNNNNRTG	2 cut(s)	156, 321
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	124, 413, 440, 596
SsiI	CCGC	2 cut(s)	65, 525
SspI	AATATT	1 cut(s)	500
SspMI	CTAG	2 cut(s)	45, 422
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	2 cut(s)	44, 219
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	2 cut(s)	291, 390
TasI	AATT	4 cut(s)	124, 413, 440, 596
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	4 cut(s)	18, 122, 380, 489
Tru9I	TTAA	4 cut(s)	18, 122, 380, 489
TseI	GCWGC	3 cut(s)	26, 110, 358
TspDTI	ATGAA	2 cut(s)	468, 593
XapI	RAATTY	3 cut(s)	124, 413, 440
XmaJI	CCTAGG	1 cut(s)	44
XmiI	GTMKAC	2 cut(s)	139, 260
XmnI	GAANNNNTTC	1 cut(s)	606
XspI	CTAG	2 cut(s)	45, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.