RLG00000017337
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
15457294 .. 15459785
2492 bp
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UTR
Exon/CDS
Intron
RLM00000017337

Sequence Viewer

Length: 1632 bp
ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCTGTTCTTGGAGCAGCATTTGGGGTGTTGTTTGATGTTGTCAAGAAAGCAGTTGACAAGCCTACTGCCTTTAAATCCCTCCTTGAGAACATCAAGTTTTCTCTGGAGTTTCTAGAGCCGGTGATTGAAAAGATAGGAGAGCATAACGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGTATCTTATAACAGAAATGGAGGAGGGCGTCAAGCTTGTCCAGAAGTCATCAAAAGTCAGTAAGTGGAACTGCATGAAGTCTTATTACACGGATCAACTTATTGAATTGGATGGTTCTCTTAAAAGACTGTTCCATATATTGATGGTACAAGGAGTAAGGGATGCGAAGGAGACCTTGATTTTGACAAGAAAACACCAAGACCAACTTATTGAAACGGCAAAAGATGCAAAGGAGACACTTGTTTTAGCACAAAAGAACACTAGCCAGCTTACTGAATCGGTAAATGATGGGAAGGAGACCTTAGAATTGGCAAGAAAAAACGCTGACCAATCAGCAAAAGATGGGAAGGAGACCTTGGTTTTGGCTAGGAAAACTAGAAGGTTGCTTAAGCGAATTGAACGACTGGTGACTTGCACTTCCAAAGCTAGCAGAAGAGCAGGGAGAAGTCGAGTTTTGGAGGCATCCAACTTAATAGTCTACCGTTTTGCCGAGTTGGTCAATGCTACTGAGAATTTCAAGTCTAGTGAGGGAGACTTTATGGGGACTTTCAAGGGTTGGGTGGATGAGAATACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGAGATTGAACCCAGAAAGTGTCGAAGACTTTAAACAGTGGCAGCTCTCAGTGAACTTCCTCGGAAGGCTTTCTCATCCCAACCTTGTCAAGCTATTGGGATACTGTCGTGAGAATAAGGAGTTGCTCTTGGTTTATGAGTTCATGCCGAATGGAAGCTTATTTAATCATCTGTCTAGAAGGAACCCTGATGAGGAACCCCTATGTTGGGATAACAGACTCAGAATCGCTATTGGAGCTGCTCGGGTCTTGACTTTGTTGCACATTTTACAAATCATACACAGAGATGTCACACCCTCAAATATATTGCTCGATGAGGATTACAATACAAAAATCGTGGATTTTTCCTTGTCAGAATGGGGGCCAGCTGATGGAAAGTTACACGTGTCAACAAAGGTTTGTGGCACAATGGGTTATATTGATCCAGACTGCTTGAGAACAGGTCATTTGTCTGTGAAGAGTGATGTGTATAGCTTCGGTGTTGTGCTGCTTGAGATTCTGACAGGGTTAAAGACAATCGATTTTAGCCGCCCTAAGGAACAAGTCAAACTGGTTGACTGGGCAACACCACTTCTCTGTGAAGAAACAAAGTTACAAACCATAATGGATGAGCAGATAAAGGGCCAATTTTCTTCCCAGGAAGCATTACAGACTGCGCAGCTTACTCTAAGATGTCTAGAAACAGATCCTGAGAGACGACCTTCCATGATGGAAGTTGTGGAGGAATTAGAACACATTCGGGGATTGAAGGAAAAACCAAACCAGTCCGAGCTTACCACCATGCAATCTTCTTCTAGTTCTCAATGA

Protein Analysis

544

Amino Acids

61.22

Weight (kDa)

6.16

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 136 6.3e-28 Arabidopsis broad-spectrum mildew resistance protein RPW8
PK_Tyr_Ser-Thr PF07714 251 - 518 9.9e-40 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 268 - 516 6.9e-38 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
Acc16I TGCGCA 1 cut(s) 1482
AccB7I CCANNNNNTGG 1 cut(s) 1196
AccI GTMKAC 1 cut(s) 687
AciI CCGC 1 cut(s) 1354
AclWI GGATC 3 cut(s) 309, 1241, 1505
AcoI YGGCCR 1 cut(s) 813
AcsI RAATTY 1 cut(s) 721
AcvI CACGTG 1 cut(s) 1210
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 5 cut(s) 1018, 1032, 1033, 1196, 1360
AflII CTTAAG 1 cut(s) 596
AflIII ACRYGT 2 cut(s) 1207, 1209
AgsI TTSAA 8 cut(s) 158, 314, 422, 608, 727, 760, 835, 1573
AjnI CCWGG 1 cut(s) 1461
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
Alw26I GTCTC 7 cut(s) 194, 374, 437, 500, 554, 735, 1513
AlwI GGATC 3 cut(s) 309, 1241, 1505
AlwNI CAGNNNCTG 1 cut(s) 1514
Ama87I CYCGRG 1 cut(s) 1068
AoxI GGCC 3 cut(s) 813, 1187, 1447
ApeKI GCWGC 5 cut(s) 44, 868, 1064, 1312, 1483
ApoI RAATTY 1 cut(s) 721
ArsI GACNNNNNNTTYG 4 cut(s) 373, 405, 553, 585
Asp700I GAANNNNTTC 2 cut(s) 895, 1560
AspLEI GCGC 1 cut(s) 1483
AspS9I GGNCC 2 cut(s) 1187, 1447
AsuHPI GGTGA 2 cut(s) 163, 628
AsuNHI GCTAGC 1 cut(s) 635
AvaI CYCGRG 1 cut(s) 1068
AxyI CCTNAGG 1 cut(s) 1359
BaeI ACNNNNGTAYC 2 cut(s) 919, 952
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbrPI CACGTG 1 cut(s) 1210
BbsI GAAGAC 1 cut(s) 858
BbvI GCAGC 5 cut(s) 56, 880, 1051, 1299, 1495
BccI CCATC 6 cut(s) 314, 346, 491, 545, 1190, 1528
BceAI ACGGC 2 cut(s) 441, 800
BciT130I CCWGG 1 cut(s) 1463
BciVI GTATCC 1 cut(s) 920
BcoDI GTCTC 7 cut(s) 194, 374, 437, 500, 554, 735, 1513
BfaI CTAG 9 cut(s) 143, 471, 576, 585, 636, 732, 1002, 1502, 1620
BfrI CTTAAG 1 cut(s) 596
BfuI GTATCC 1 cut(s) 920
BisI GCNGC 6 cut(s) 45, 869, 1065, 1313, 1354, 1484
BlsI GCNGC 6 cut(s) 46, 870, 1066, 1314, 1355, 1485
Bme1390I CCNGG 1 cut(s) 1463
BmeT110I CYCGRG 1 cut(s) 1068
BmgT120I GGNCC 2 cut(s) 1187, 1447
BmiI GGNNCC 3 cut(s) 1010, 1023, 1188
BmrFI CCNGG 1 cut(s) 1463
BmrI ACTGGG 1 cut(s) 1393
BmsI GCATC 3 cut(s) 361, 424, 680
BmtI GCTAGC 1 cut(s) 639
BmuI ACTGGG 1 cut(s) 1393
BpiI GAAGAC 1 cut(s) 858
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 3 cut(s) 134, 1279, 1337
Bsa29I ATCGAT 1 cut(s) 1344
BsaAI YACGTR 1 cut(s) 1210
BsaHI GRCGYC 1 cut(s) 237
BsaI GGTCTC 4 cut(s) 194, 374, 500, 554
BsaJI CCNNGG 3 cut(s) 564, 886, 1461
Bsc4I CCNNNNNNNGG 5 cut(s) 1018, 1032, 1033, 1196, 1360
Bse118I RCCGGY 1 cut(s) 148
Bse1I ACTGG 5 cut(s) 618, 811, 1380, 1388, 1588
Bse21I CCTNAGG 1 cut(s) 1359
BseBI CCWGG 1 cut(s) 1463
BseCI ATCGAT 1 cut(s) 1344
BseDI CCNNGG 3 cut(s) 564, 886, 1461
BseGI GGATG 6 cut(s) 325, 376, 671, 778, 901, 1438
BseLI CCNNNNNNNGG 5 cut(s) 1018, 1032, 1033, 1196, 1360
BseMII CTCAG 4 cut(s) 708, 888, 1060, 1506
BseNI ACTGG 5 cut(s) 618, 811, 1380, 1388, 1588
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 5 cut(s) 56, 880, 1051, 1299, 1495
BshFI GGCC 3 cut(s) 815, 1189, 1449
BshVI ATCGAT 1 cut(s) 1344
BsiHKCI CYCGRG 1 cut(s) 1068
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 766
BslI CCNNNNNNNGG 5 cut(s) 1018, 1032, 1033, 1196, 1360
BsmAI GTCTC 7 cut(s) 194, 374, 437, 500, 554, 735, 1513
BsmBI CGTCTC 1 cut(s) 1513
BsmFI GGGAC 1 cut(s) 766
BsnI GGCC 3 cut(s) 815, 1189, 1449
Bso31I GGTCTC 4 cut(s) 194, 374, 500, 554
BsoBI CYCGRG 1 cut(s) 1068
Bsp143I GATC 3 cut(s) 301, 1246, 1510
BspACI CCGC 1 cut(s) 1354
BspANI GGCC 3 cut(s) 815, 1189, 1449
BspCNI CTCAG 4 cut(s) 709, 887, 1059, 1507
BspDI ATCGAT 1 cut(s) 1344
BspLI GGNNCC 3 cut(s) 1010, 1023, 1188
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 3 cut(s) 309, 1241, 1505
BspQI GCTCTTC 1 cut(s) 637
BspTI CTTAAG 1 cut(s) 596
BspTNI GGTCTC 4 cut(s) 194, 374, 500, 554
BsrFI RCCGGY 1 cut(s) 148
BsrI ACTGG 5 cut(s) 618, 811, 1380, 1388, 1588
BssAI RCCGGY 1 cut(s) 148
BssECI CCNNGG 3 cut(s) 564, 886, 1461
BssMI GATC 3 cut(s) 301, 1246, 1510
BssNI GRCGYC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 564
Bst2UI CCWGG 1 cut(s) 1463
Bst4CI ACNGT 4 cut(s) 339, 692, 864, 932
Bst6I CTCTTC 2 cut(s) 637, 1277
BstACI GRCGYC 1 cut(s) 237
BstAFI CTTAAG 1 cut(s) 596
BstAPI GCANNNNNTGC 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 1210
BstC8I GCNNGC 4 cut(s) 476, 637, 786, 1191
BstDEI CTNAG 8 cut(s) 511, 717, 795, 874, 1046, 1359, 1493, 1515
BstF5I GGATG 6 cut(s) 325, 376, 671, 778, 901, 1438
BstHHI GCGC 1 cut(s) 1483
BstKTI GATC 3 cut(s) 304, 1249, 1513
BstMAI GTCTC 7 cut(s) 194, 374, 437, 500, 554, 735, 1513
BstMBI GATC 3 cut(s) 301, 1246, 1510
BstMWI GCNNNNNNNGC 2 cut(s) 434, 1061
BstNI CCWGG 1 cut(s) 1463
BstSCI CCNGG 1 cut(s) 1461
BstV1I GCAGC 5 cut(s) 56, 880, 1051, 1299, 1495
BstV2I GAAGAC 1 cut(s) 858
BstX2I RGATCY 1 cut(s) 1510
BstYI RGATCY 1 cut(s) 1510
Bsu15I ATCGAT 1 cut(s) 1344
Bsu36I CCTNAGG 1 cut(s) 1359
BsuI GTATCC 1 cut(s) 920
BsuRI GGCC 3 cut(s) 815, 1189, 1449
BsuTUI ATCGAT 1 cut(s) 1344
BtsCI GGATG 6 cut(s) 325, 376, 671, 778, 901, 1438
BtsIMutI CAGTG 3 cut(s) 804, 869, 882
Cac8I GCNNGC 4 cut(s) 476, 637, 786, 1191
CaiI CAGNNNCTG 1 cut(s) 1514
CfoI GCGC 1 cut(s) 1483
Cfr10I RCCGGY 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 1187, 1447
ClaI ATCGAT 1 cut(s) 1344
CseI GACGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 356
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviAII CATG 4 cut(s) 283, 970, 1531, 1606
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 8 cut(s) 511, 717, 795, 874, 1046, 1359, 1493, 1515
DpnI GATC 3 cut(s) 303, 1248, 1512
DpnII GATC 3 cut(s) 301, 1246, 1510
DraI TTTAAA 2 cut(s) 103, 859
EaeI YGGCCR 1 cut(s) 813
Eam1104I CTCTTC 2 cut(s) 637, 1277
EarI CTCTTC 2 cut(s) 637, 1277
Eco130I CCWWGG 1 cut(s) 564
Eco31I GGTCTC 4 cut(s) 194, 374, 500, 554
Eco72I CACGTG 1 cut(s) 1210
Eco81I CCTNAGG 1 cut(s) 1359
Eco88I CYCGRG 1 cut(s) 1068
EcoRII CCWGG 1 cut(s) 1461
EcoT14I CCWWGG 1 cut(s) 564
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 1513
FaeI CATG 4 cut(s) 286, 973, 1534, 1609
FalI AAGNNNNNCTT 8 cut(s) 368, 400, 399, 431, 494, 526, 548, 580
FaqI GGGAC 1 cut(s) 766
FatI CATG 4 cut(s) 282, 969, 1530, 1605
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 6 cut(s) 45, 869, 1065, 1313, 1354, 1484
FokI GGATG 6 cut(s) 332, 383, 658, 785, 888, 1445
Fsp4HI GCNGC 6 cut(s) 45, 869, 1065, 1313, 1354, 1484
FspBI CTAG 9 cut(s) 143, 471, 576, 585, 636, 732, 1002, 1502, 1620
FspI TGCGCA 1 cut(s) 1482
GlaI GCGC 1 cut(s) 1482
GluI GCNGC 6 cut(s) 45, 869, 1065, 1313, 1354, 1484
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 3 cut(s) 815, 1189, 1449
HapII CCGG 1 cut(s) 149
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 1483
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 4 cut(s) 286, 973, 1534, 1609
Hin6I GCGC 1 cut(s) 1481
HinP1I GCGC 1 cut(s) 1481
HincII GTYRAC 3 cut(s) 85, 1215, 1381
HindII GTYRAC 3 cut(s) 85, 1215, 1381
HindIII AAGCTT 2 cut(s) 242, 982
HinfI GANTC 4 cut(s) 485, 1044, 1050, 1321
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 163, 628
Hpy166II GTNNAC 5 cut(s) 85, 688, 880, 1215, 1381
Hpy188I TCNGA 5 cut(s) 890, 1049, 1180, 1326, 1594
Hpy8I GTNNAC 5 cut(s) 85, 688, 880, 1215, 1381
HpyAV CCTTC 9 cut(s) 370, 496, 550, 582, 801, 885, 999, 1536, 1567
HpyCH4III ACNGT 4 cut(s) 339, 692, 864, 932
HpyCH4IV ACGT 2 cut(s) 177, 1209
HpyCH4V TGCA 6 cut(s) 282, 437, 624, 788, 1087, 1609
HpyF10VI GCNNNNNNNGC 2 cut(s) 434, 1061
HpyF3I CTNAG 8 cut(s) 511, 717, 795, 874, 1046, 1359, 1493, 1515
HpySE526I ACGT 2 cut(s) 177, 1209
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 4 cut(s) 286, 973, 1534, 1609
HspAI GCGC 1 cut(s) 1481
Kzo9I GATC 3 cut(s) 301, 1246, 1510
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 2 cut(s) 41, 1061
Lsp1109I GCAGC 5 cut(s) 56, 880, 1051, 1299, 1495
LweI GCATC 3 cut(s) 361, 424, 680
MaeI CTAG 9 cut(s) 143, 471, 576, 585, 636, 732, 1002, 1502, 1620
MaeII ACGT 2 cut(s) 177, 1209
MaeIII GTNAC 4 cut(s) 616, 1114, 1203, 1416
MalI GATC 3 cut(s) 303, 1248, 1512
MboI GATC 3 cut(s) 301, 1246, 1510
MboII GAAGA 8 cut(s) 212, 654, 863, 1294, 1418, 1449, 1605, 1608
MflI RGATCY 1 cut(s) 1510
MluCI AATT 7 cut(s) 182, 314, 515, 603, 721, 1451, 1550
MlyI GAGTC 1 cut(s) 1038
MmeI TCCRAC 1 cut(s) 699
MroXI GAANNNNTTC 2 cut(s) 895, 1560
MseI TTAA 7 cut(s) 102, 330, 597, 680, 858, 990, 1334
MslI CAYNNNNRTG 2 cut(s) 809, 1110
MspA1I CMGCKG 1 cut(s) 1193
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 1463
MvaI CCWGG 1 cut(s) 1463
MwoI GCNNNNNNNGC 2 cut(s) 434, 1061
NdeII GATC 3 cut(s) 301, 1246, 1510
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 4 cut(s) 286, 973, 1534, 1609
NlaIV GGNNCC 3 cut(s) 1010, 1023, 1188
NmeAIII GCCGAG 1 cut(s) 724
NmuCI GTSAC 2 cut(s) 616, 1114
NsbI TGCGCA 1 cut(s) 1482
PciSI GCTCTTC 1 cut(s) 637
PdmI GAANNNNTTC 2 cut(s) 895, 1560
PfeI GAWTC 3 cut(s) 485, 1050, 1321
PflMI CCANNNNNTGG 1 cut(s) 1196
PkrI GCNGC 6 cut(s) 46, 870, 1066, 1314, 1355, 1485
PleI GAGTC 1 cut(s) 1038
PmaCI CACGTG 1 cut(s) 1210
PmlI CACGTG 1 cut(s) 1210
PpsI GAGTC 1 cut(s) 1038
Ppu21I YACGTR 1 cut(s) 1210
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 1461
PspCI CACGTG 1 cut(s) 1210
PspGI CCWGG 1 cut(s) 1461
PspN4I GGNNCC 3 cut(s) 1010, 1023, 1188
PspPI GGNCC 2 cut(s) 1187, 1447
PstNI CAGNNNCTG 1 cut(s) 1514
PsuI RGATCY 1 cut(s) 1510
PvuII CAGCTG 1 cut(s) 1193
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 2 cut(s) 809, 1110
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 7 cut(s) 102, 330, 597, 680, 858, 990, 1334
SatI GCNGC 6 cut(s) 45, 869, 1065, 1313, 1354, 1484
Sau3AI GATC 3 cut(s) 301, 1246, 1510
Sau96I GGNCC 2 cut(s) 1187, 1447
SchI GAGTC 1 cut(s) 1038
ScrFI CCNGG 1 cut(s) 1463
SfaNI GCATC 3 cut(s) 361, 424, 680
SmiMI CAYNNNNRTG 2 cut(s) 809, 1110
SmlI CTYRAG 4 cut(s) 113, 596, 1258, 1316
SmoI CTYRAG 4 cut(s) 113, 596, 1258, 1316
Sse9I AATT 7 cut(s) 182, 314, 515, 603, 721, 1451, 1550
SsiI CCGC 1 cut(s) 1354
SspMI CTAG 9 cut(s) 143, 471, 576, 585, 636, 732, 1002, 1502, 1620
StyD4I CCNGG 1 cut(s) 1461
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 4 cut(s) 339, 692, 864, 932
TaiI ACGT 2 cut(s) 180, 1212
TaqI TCGA 4 cut(s) 658, 849, 1137, 1344
TasI AATT 7 cut(s) 182, 314, 515, 603, 721, 1451, 1550
TauI GCSGC 1 cut(s) 1356
TfiI GAWTC 3 cut(s) 485, 1050, 1321
Tru1I TTAA 7 cut(s) 102, 330, 597, 680, 858, 990, 1334
Tru9I TTAA 7 cut(s) 102, 330, 597, 680, 858, 990, 1334
TscAI CASTG 3 cut(s) 811, 869, 882
TseFI GTSAC 2 cut(s) 616, 1114
TseI GCWGC 5 cut(s) 44, 868, 1064, 1312, 1483
Tsp45I GTSAC 2 cut(s) 616, 1114
TspDTI ATGAA 3 cut(s) 213, 299, 958
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 3 cut(s) 811, 869, 882
Van91I CCANNNNNTGG 1 cut(s) 1196
Vha464I CTTAAG 1 cut(s) 596
XapI RAATTY 1 cut(s) 721
XbaI TCTAGA 3 cut(s) 142, 1001, 1501
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 2 cut(s) 895, 1560
XspI CTAG 9 cut(s) 143, 471, 576, 585, 636, 732, 1002, 1502, 1620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.