Rmu_sc0002316.1_g000046
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002316.1
Physical Location & Seq
Reverse (-)
211494 .. 214330
2837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002316.1_g000046.1.cds

Sequence Viewer

Length: 1875 bp
atgagagcaggggcacttgaatatgctgggtttgtgaggaaagtgaggactccttcgatcttgatctttactctttcttcatccaaagcaaaagccccatcaaccccttggagaagtcaagctctgtgccctgccttaggggagtttgtagggggtgcagctcttggtgcagcatttgggctgttgtttgatgttgtgaagaaagcagttgacaagcctagtacctttagatccctctttgagaacattaaattttcgcttaagtttttaaaaccaatgatcgaaaagataggagaacataacgtggaattgggtctcccagatgaagaaataaagtatattataagagaaatggaggagggcgtaaagcttgtccagaagtcatcaaagatcagtaagtggaactgcatgaagttttattacaaggatcaacttattgaactagatgggtctcttaaaagactgttagatatattgatagtgcaaggattaagagatgggaaggagaccttgattttggcaagaaaacaccaagaccaacttattgaatcgtcaagagatgcaaaggagaccttggttttggcacaaaagaacaatgaccagcttattgaatcagcaaaggatgggaaagagaccttagttctggcaagacaaaatgcggaccaacttattgattcgtcaagagatgggaaggagaccttggatttggcaagacaagacaatgcccagcttattgaatcagcaagggatggaaaggagaccctggttttggccaagaacattaaaaggtttctcaaacgaattgaatgtttggtgcgttgtacttataaaggaaattccagatatcacagtgggagcagagtttcaaaagcaagcagaagctcaggaagaggtcgaattttggagacatccaacttaagagtttaccgttttgccgagttgaaggatgctactcagaatttcaggcaaggtgagtttggttgtggaggctttgggagtatgtacaagggttggatggatgaaaagacgcttgcaccttctaaggttggcactggaatggccgttgctgtcaagacattttactcagaaagtatcgaaagcattaaacagtggaagctggagctgaacttcctaggaagggtttctcatccgaaccttgtcaagctattgggatactgttgtgagaaaaaggagatgttcttaatttatgaattcattccgaatggaagcttacatagtcatctttttaacagcatttctgtcgaggaaccactttcttgggacatcagactcaaaatagctattggagctgctcggggattaaatttattgcacagtatacaaatcacacacagagatgtcaaaccatcaaatatattgcttgatgaggattacaatacaaaactatcagatttttccttggcaaaatgggggtcagctgatggagagttagatgtgtctacaggggtttgtggcacaataggatatatcgatccagaatacctgagaacaggtcatgtgtgtgtgaagagcgatgtgtatagcttcggtgttttgctgcttgagattctgacaggattaaagtccttcgatttaagccgatctgaggaagaatttagtctggctaggtgggctataccacttttgtgtgatgaaacgaagttgcaaaccatcatggatgagcagattaagggccaatattcctcccaggaagcattgcagagtgcacagcttgctctaaaatgtttagaaacagatcctgaaagccgaccttccatgaaagaagttgtggagcaattggaaaacattcaggcattgaagggaaaaccagaccagtccaagcttactactatgcagtattcttctaattcttaa

Protein Analysis

624

Amino Acids

69.97

Weight (kDa)

8.52

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 344, 828
AccI GTMKAC 2 cut(s) 1339, 1460
AciI CCGC 1 cut(s) 659
AclWI GGATC 4 cut(s) 225, 435, 1487, 1751
AcoI YGGCCR 2 cut(s) 771, 1059
AcsI RAATTY 7 cut(s) 251, 835, 897, 958, 1211, 1324, 1613
AfaI GTAC 3 cut(s) 223, 823, 1004
AfiI CCNNNNNNNGG 4 cut(s) 137, 769, 1138, 1606
AflII CTTAAG 2 cut(s) 260, 916
AgsI TTSAA 9 cut(s) 20, 440, 548, 611, 737, 806, 867, 943, 1819
AjnI CCWGG 2 cut(s) 762, 1707
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AleI CACNNNNGTG 1 cut(s) 1645
Alw21I GWGCWC 1 cut(s) 1729
Alw26I GTCTC 8 cut(s) 320, 456, 500, 563, 626, 689, 752, 899
Alw44I GTGCAC 1 cut(s) 1725
AlwI GGATC 4 cut(s) 225, 435, 1487, 1751
AlwNI CAGNNNCTG 1 cut(s) 1760
Ama87I CYCGRG 1 cut(s) 1314
AoxI GGCC 3 cut(s) 771, 1059, 1693
ApaLI GTGCAC 1 cut(s) 1725
ApeKI GCWGC 4 cut(s) 158, 170, 1310, 1558
ApoI RAATTY 7 cut(s) 251, 835, 897, 958, 1211, 1324, 1613
Asp700I GAANNNNTTC 3 cut(s) 1141, 1215, 1806
AspA2I CCTAGG 1 cut(s) 1132
AspS9I GGNCC 2 cut(s) 661, 1693
AsuHPI GGTGA 1 cut(s) 983
AvaI CYCGRG 1 cut(s) 1314
AvaII GGWCC 1 cut(s) 661
AvrII CCTAGG 1 cut(s) 1132
AxyI CCTNAGG 1 cut(s) 136
BaeGI GKGCMC 3 cut(s) 16, 131, 1729
BaeI ACNNNNGTAYC 2 cut(s) 1165, 1198
BalI TGGCCA 1 cut(s) 773
BarI GAAGNNNNNNTAC 2 cut(s) 404, 436
Bbv12I GWGCWC 1 cut(s) 1729
BbvI GCAGC 4 cut(s) 170, 182, 1297, 1545
BceAI ACGGC 1 cut(s) 1046
BcgI CGANNNNNNTGC 2 cut(s) 1243, 1277
BciT130I CCWGG 2 cut(s) 764, 1709
BciVI GTATCC 1 cut(s) 1166
BcoDI GTCTC 8 cut(s) 320, 456, 500, 563, 626, 689, 752, 899
BfaI CTAG 4 cut(s) 219, 443, 1133, 1626
BfmI CTRYAG 1 cut(s) 1461
BfrI CTTAAG 2 cut(s) 260, 916
BfuI GTATCC 1 cut(s) 1166
BisI GCNGC 4 cut(s) 159, 171, 1311, 1559
BlnI CCTAGG 1 cut(s) 1132
BlsI GCNGC 4 cut(s) 160, 172, 1312, 1560
Bme1390I CCNGG 2 cut(s) 764, 1709
Bme18I GGWCC 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 1314
BmgT120I GGNCC 2 cut(s) 661, 1693
BmiI GGNNCC 1 cut(s) 1269
BmrFI CCNGG 2 cut(s) 764, 1709
BmsI GCATC 2 cut(s) 550, 937
BpmI CTGGAG 1 cut(s) 1139
Bpu10I CCTNAGC 1 cut(s) 883
BpuEI CTTGAG 1 cut(s) 1583
Bsa29I ATCGAT 1 cut(s) 1491
BsaBI GATNNNNATC 1 cut(s) 62
BsaI GGTCTC 7 cut(s) 320, 456, 500, 563, 626, 689, 752
BsaJI CCNNGG 7 cut(s) 107, 573, 699, 762, 1132, 1419, 1707
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 769, 1138, 1606
Bse1I ACTGG 2 cut(s) 1057, 1834
Bse21I CCTNAGG 1 cut(s) 136
Bse3DI GCAATG 1 cut(s) 1715
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 2 cut(s) 764, 1709
BseCI ATCGAT 1 cut(s) 1491
BseDI CCNNGG 7 cut(s) 107, 573, 699, 762, 1132, 1419, 1707
BseGI GGATG 9 cut(s) 80, 628, 754, 908, 952, 1020, 1024, 1147, 1684
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 4 cut(s) 137, 769, 1138, 1606
BseMI GCAATG 1 cut(s) 1715
BseMII CTCAG 5 cut(s) 897, 968, 1098, 1496, 1596
BseNI ACTGG 2 cut(s) 1057, 1834
BseRI GAGGAG 1 cut(s) 371
BseSI GKGCMC 3 cut(s) 16, 131, 1729
BseXI GCAGC 4 cut(s) 170, 182, 1297, 1545
BseYI CCCAGC 2 cut(s) 26, 726
BsgI GTGCAG 2 cut(s) 177, 189
BshFI GGCC 3 cut(s) 773, 1061, 1695
BshVI ATCGAT 1 cut(s) 1491
BsiHKAI GWGCWC 1 cut(s) 1729
BsiHKCI CYCGRG 1 cut(s) 1314
BslFI GGGAC 1 cut(s) 1295
BslI CCNNNNNNNGG 4 cut(s) 137, 769, 1138, 1606
BsmAI GTCTC 8 cut(s) 320, 456, 500, 563, 626, 689, 752, 899
BsmFI GGGAC 1 cut(s) 1295
BsnI GGCC 3 cut(s) 773, 1061, 1695
Bso31I GGTCTC 7 cut(s) 320, 456, 500, 563, 626, 689, 752
BsoBI CYCGRG 1 cut(s) 1314
Bsp1286I GDGCHC 3 cut(s) 16, 131, 1729
Bsp1407I TGTACA 1 cut(s) 1002
Bsp143I GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
BspACI CCGC 1 cut(s) 659
BspANI GGCC 3 cut(s) 773, 1061, 1695
BspCNI CTCAG 5 cut(s) 896, 967, 1097, 1497, 1597
BspDI ATCGAT 1 cut(s) 1491
BspLI GGNNCC 1 cut(s) 1269
BspPI GGATC 4 cut(s) 225, 435, 1487, 1751
BspQI GCTCTTC 1 cut(s) 1523
BspTI CTTAAG 2 cut(s) 260, 916
BspTNI GGTCTC 7 cut(s) 320, 456, 500, 563, 626, 689, 752
BsrDI GCAATG 1 cut(s) 1715
BsrGI TGTACA 1 cut(s) 1002
BsrI ACTGG 2 cut(s) 1057, 1834
BssECI CCNNGG 7 cut(s) 107, 573, 699, 762, 1132, 1419, 1707
BssMI GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
BssNAI GTATAC 1 cut(s) 1340
BssT1I CCWWGG 5 cut(s) 107, 573, 699, 1132, 1419
Bst1107I GTATAC 1 cut(s) 1340
Bst2UI CCWGG 2 cut(s) 764, 1709
Bst4CI ACNGT 6 cut(s) 465, 851, 929, 1110, 1178, 1337
Bst6I CTCTTC 2 cut(s) 883, 1523
BstAFI CTTAAG 2 cut(s) 260, 916
BstAPI GCANNNNNTGC 1 cut(s) 1733
BstAUI TGTACA 1 cut(s) 1002
BstC8I GCNNGC 3 cut(s) 874, 1032, 1734
BstDEI CTNAG 8 cut(s) 136, 637, 883, 954, 1041, 1084, 1505, 1605
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 9 cut(s) 80, 628, 754, 908, 952, 1020, 1024, 1147, 1684
BstKTI GATC 9 cut(s) 60, 66, 233, 282, 393, 430, 1495, 1604, 1759
BstMAI GTCTC 8 cut(s) 320, 456, 500, 563, 626, 689, 752, 899
BstMBI GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
BstMWI GCNNNNNNNGC 4 cut(s) 167, 1307, 1631, 1733
BstNI CCWGG 2 cut(s) 764, 1709
BstSCI CCNGG 2 cut(s) 762, 1707
BstSFI CTRYAG 1 cut(s) 1461
BstSLI GKGCMC 3 cut(s) 16, 131, 1729
BstV1I GCAGC 4 cut(s) 170, 182, 1297, 1545
BstX2I RGATCY 2 cut(s) 230, 1756
BstXI CCANNNNNNTGG 1 cut(s) 1278
BstYI RGATCY 2 cut(s) 230, 1756
BstZ17I GTATAC 1 cut(s) 1340
Bsu15I ATCGAT 1 cut(s) 1491
Bsu36I CCTNAGG 1 cut(s) 136
BsuI GTATCC 1 cut(s) 1166
BsuRI GGCC 3 cut(s) 773, 1061, 1695
BsuTUI ATCGAT 1 cut(s) 1491
BtgZI GCGATG 1 cut(s) 1548
BtsCI GGATG 9 cut(s) 80, 628, 754, 908, 952, 1020, 1024, 1147, 1684
BtsIMutI CAGTG 3 cut(s) 856, 1050, 1115
Cac8I GCNNGC 3 cut(s) 874, 1032, 1734
CaiI CAGNNNCTG 1 cut(s) 1760
Cfr13I GGNCC 2 cut(s) 661, 1693
ClaI ATCGAT 1 cut(s) 1491
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 3 cut(s) 222, 822, 1003
CviAII CATG 4 cut(s) 409, 1517, 1675, 1777
CviQI GTAC 3 cut(s) 222, 822, 1003
DdeI CTNAG 8 cut(s) 136, 637, 883, 954, 1041, 1084, 1505, 1605
DpnI GATC 9 cut(s) 59, 65, 232, 281, 392, 429, 1494, 1603, 1758
DpnII GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
DraI TTTAAA 1 cut(s) 270
EaeI YGGCCR 2 cut(s) 771, 1059
Eam1104I CTCTTC 2 cut(s) 883, 1523
EarI CTCTTC 2 cut(s) 883, 1523
Eco130I CCWWGG 5 cut(s) 107, 573, 699, 1132, 1419
Eco31I GGTCTC 7 cut(s) 320, 456, 500, 563, 626, 689, 752
Eco32I GATATC 1 cut(s) 845
Eco47I GGWCC 1 cut(s) 661
Eco81I CCTNAGG 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 1314
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 1211
EcoRII CCWGG 2 cut(s) 762, 1707
EcoRV GATATC 1 cut(s) 845
EcoT14I CCWWGG 5 cut(s) 107, 573, 699, 1132, 1419
ErhI CCWWGG 5 cut(s) 107, 573, 699, 1132, 1419
FaeI CATG 4 cut(s) 412, 1520, 1678, 1780
FaqI GGGAC 1 cut(s) 1295
FatI CATG 4 cut(s) 408, 1516, 1674, 1776
FblI GTMKAC 2 cut(s) 1339, 1460
Fnu4HI GCNGC 4 cut(s) 159, 171, 1311, 1559
FokI GGATG 9 cut(s) 67, 635, 761, 895, 959, 1027, 1031, 1134, 1691
Fsp4HI GCNGC 4 cut(s) 159, 171, 1311, 1559
FspBI CTAG 4 cut(s) 219, 443, 1133, 1626
GluI GCNGC 4 cut(s) 159, 171, 1311, 1559
GsaI CCCAGC 2 cut(s) 30, 730
GsuI CTGGAG 1 cut(s) 1139
HaeIII GGCC 3 cut(s) 773, 1061, 1695
HgaI GACGC 1 cut(s) 1036
Hin1II CATG 4 cut(s) 412, 1520, 1678, 1780
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 3 cut(s) 368, 1228, 1841
HinfI GANTC 7 cut(s) 49, 548, 611, 674, 737, 1290, 1567
HphI GGTGA 1 cut(s) 983
Hpy166II GTNNAC 5 cut(s) 211, 925, 1340, 1461, 1727
Hpy188I TCNGA 8 cut(s) 957, 1087, 1152, 1221, 1289, 1411, 1572, 1606
Hpy188III TCNNGA 9 cut(s) 61, 376, 555, 681, 840, 885, 1072, 1496, 1760
Hpy8I GTNNAC 5 cut(s) 211, 925, 1340, 1461, 1727
HpyAV CCTTC 9 cut(s) 63, 496, 685, 937, 1047, 1131, 1597, 1782, 1813
HpyCH4III ACNGT 6 cut(s) 465, 851, 929, 1110, 1178, 1337
HpyCH4IV ACGT 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 1307, 1631, 1733
HpyF3I CTNAG 8 cut(s) 136, 637, 883, 954, 1041, 1084, 1505, 1605
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 4 cut(s) 412, 1520, 1678, 1780
Kzo9I GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
LguI GCTCTTC 1 cut(s) 1523
LmnI GCTCC 4 cut(s) 855, 1120, 1307, 1792
Lsp1109I GCAGC 4 cut(s) 170, 182, 1297, 1545
LweI GCATC 2 cut(s) 550, 937
MaeI CTAG 4 cut(s) 219, 443, 1133, 1626
MaeII ACGT 1 cut(s) 303
MalI GATC 9 cut(s) 59, 65, 232, 281, 392, 429, 1494, 1603, 1758
MboI GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
MboII GAAGA 7 cut(s) 69, 211, 338, 900, 1540, 1622, 1854
MfeI CAATTG 1 cut(s) 1796
MflI RGATCY 2 cut(s) 230, 1756
MhlI GDGCHC 3 cut(s) 16, 131, 1729
MlsI TGGCCA 1 cut(s) 773
MluNI TGGCCA 1 cut(s) 773
MlyI GAGTC 2 cut(s) 43, 1284
MmeI TCCRAC 2 cut(s) 936, 992
Mox20I TGGCCA 1 cut(s) 773
MroXI GAANNNNTTC 3 cut(s) 1141, 1215, 1806
MscI TGGCCA 1 cut(s) 773
MslI CAYNNNNRTG 4 cut(s) 1055, 1356, 1521, 1645
Msp20I TGGCCA 1 cut(s) 773
MspA1I CMGCKG 1 cut(s) 1439
MspCI CTTAAG 2 cut(s) 260, 916
MspR9I CCNGG 2 cut(s) 764, 1709
MunI CAATTG 1 cut(s) 1796
MvaI CCWGG 2 cut(s) 764, 1709
MwoI GCNNNNNNNGC 4 cut(s) 167, 1307, 1631, 1733
NdeII GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
NlaIII CATG 4 cut(s) 412, 1520, 1678, 1780
NlaIV GGNNCC 1 cut(s) 1269
NmeAIII GCCGAG 1 cut(s) 961
OliI CACNNNNGTG 1 cut(s) 1645
PciSI GCTCTTC 1 cut(s) 1523
PdmI GAANNNNTTC 3 cut(s) 1141, 1215, 1806
PfeI GAWTC 5 cut(s) 548, 611, 674, 737, 1567
PkrI GCNGC 4 cut(s) 160, 172, 1312, 1560
PleI GAGTC 2 cut(s) 43, 1284
PpsI GAGTC 2 cut(s) 43, 1284
PsiI TTATAA 2 cut(s) 344, 828
Psp6I CCWGG 2 cut(s) 762, 1707
PspFI CCCAGC 2 cut(s) 26, 726
PspGI CCWGG 2 cut(s) 762, 1707
PspN4I GGNNCC 1 cut(s) 1269
PspPI GGNCC 2 cut(s) 661, 1693
PstNI CAGNNNCTG 1 cut(s) 1760
PsuI RGATCY 2 cut(s) 230, 1756
PvuII CAGCTG 1 cut(s) 1439
RsaI GTAC 3 cut(s) 223, 823, 1004
RsaNI GTAC 3 cut(s) 222, 822, 1003
RseI CAYNNNNRTG 4 cut(s) 1055, 1356, 1521, 1645
SapI GCTCTTC 1 cut(s) 1523
SatI GCNGC 4 cut(s) 159, 171, 1311, 1559
Sau3AI GATC 9 cut(s) 57, 63, 230, 279, 390, 427, 1492, 1601, 1756
Sau96I GGNCC 2 cut(s) 661, 1693
SchI GAGTC 2 cut(s) 43, 1284
ScrFI CCNGG 2 cut(s) 764, 1709
SduI GDGCHC 3 cut(s) 16, 131, 1729
SfaNI GCATC 2 cut(s) 550, 937
SfcI CTRYAG 1 cut(s) 1461
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 4 cut(s) 1055, 1356, 1521, 1645
SmlI CTYRAG 3 cut(s) 260, 916, 1562
SmoI CTYRAG 3 cut(s) 260, 916, 1562
SsiI CCGC 1 cut(s) 659
SspI AATATT 1 cut(s) 1700
SspMI CTAG 4 cut(s) 219, 443, 1133, 1626
StyD4I CCNGG 2 cut(s) 762, 1707
StyI CCWWGG 5 cut(s) 107, 573, 699, 1132, 1419
TaaI ACNGT 6 cut(s) 465, 851, 929, 1110, 1178, 1337
TaiI ACGT 1 cut(s) 306
TaqI TCGA 7 cut(s) 56, 282, 895, 1095, 1263, 1491, 1590
TatI WGTACW 2 cut(s) 821, 1002
TfiI GAWTC 5 cut(s) 548, 611, 674, 737, 1567
TscAI CASTG 3 cut(s) 856, 1057, 1115
TseI GCWGC 4 cut(s) 158, 170, 1310, 1558
TspDTI ATGAA 8 cut(s) 69, 339, 425, 1035, 1204, 1224, 1668, 1793
TspRI CASTG 3 cut(s) 856, 1057, 1115
Vha464I CTTAAG 2 cut(s) 260, 916
VneI GTGCAC 1 cut(s) 1725
VpaK11BI GGWCC 1 cut(s) 661
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 7 cut(s) 251, 835, 897, 958, 1211, 1324, 1613
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmaJI CCTAGG 1 cut(s) 1132
XmiI GTMKAC 2 cut(s) 1339, 1460
XmnI GAANNNNTTC 3 cut(s) 1141, 1215, 1806
XspI CTAG 4 cut(s) 219, 443, 1133, 1626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.