Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

15614377 .. 15617308

Gene Structure 2932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG178000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGGGCAGGGGCACTTGAATATGCTGGGTTTGTGAGGAAAGTGAGGACTCCTTCGATCTTGATCTTTACTCTTTCTTCATCCAAAGCAAAAGCCCCCATCAACCTCTTGGAGAAGTCAAGCTCTGTGCCCTGCCTCCAACAAATATATTACTTCTCTCCTTGCTCTTCATCAAAGCTTACATTGAAACGAACACAGTTTTCTCATTTGGGTTATGGACTTTGTCGTAATAATGAAGAATCAGTAATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCAGCTCTTGGTGCAGCATTTGGGCTGTTGTTTGATGTTGTGAAGAAAGCAGTTGACAAGCCTAGTACCTTTAGATCCCTCTTTGAGAACATTAAATTTTCGCTTAAGTTTTTAAAACCAATGATCGAAAAGATAGGAGAACATAACGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGTATATTATAAGAGAAATGGAGGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAGATCAGTGAGTTTGGTTGTGGAGGTTTTGGGAGTATGTACAAGGGTTGGATGGATGAAAAGACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGACATTTTACTCAGAAAGTATCGAAAGCATTAAACAGTGGCAGGATTACAATACAAAACTGTCAGATTTTTCCTTGGCAAAATGGGGGTCAGCTGATGGAGAGTTAGATGTGTCTACAGGGGTTTGTGGCACAATAGGATATATCGATCCAGAATACCTGAGAACAGGTCATGTGTGTGTGAAGGGCGATGTGTATAGCTTCGGTGTTTTGCTGCTTGAGATTCTGACAGGATTAAAGTCCTTCGATTTAAGCCGATCTGAGGAAGAATTTAGTCTGGCTAGGTGGGCTATACCACTTTTGTGTGATGAAACAAAGTTGCAAACCATCATGGATGAGCAGATTAAGGGCCAATATTCCTCCCAGGAAGCATTGCAGAGTGCACAGCTTGCTCTAAAATGTTTAGAAACAGATCCTGAAAGCGGACCTTCCATGAAAGAAGTTGTGGAGCAATTGGAAAACATTCAGGCATTGAAGGGAAAACCAGACCAGTCCGAGCTTACTACTATGCAGTATTCTTCTAATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

381

Amino Acids

42.09

Weight (kDa)

5.44

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	88 - 173	8.9e-17	Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase	PF00069	221 - 355	9.2e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	222 - 357	2.6e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	464
AccI	GTMKAC	1 cut(s)	731
AciI	CCGC	1 cut(s)	1038
AclWI	GGATC	3 cut(s)	345, 758, 1022
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	2 cut(s)	371, 884
AfaI	GTAC	2 cut(s)	343, 548
AfiI	CCNNNNNNNGG	2 cut(s)	877, 1037
AflII	CTTAAG	1 cut(s)	380
AgsI	TTSAA	3 cut(s)	20, 187, 1090
AjnI	CCWGG	1 cut(s)	978
AleI	CACNNNNGTG	1 cut(s)	916
AluBI	AGCT	8 cut(s)	123, 178, 281, 490, 710, 816, 1003, 1114
AluI	AGCT	8 cut(s)	123, 178, 281, 490, 710, 816, 1003, 1114
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	1 cut(s)	440
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	3 cut(s)	345, 758, 1022
AlwNI	CAGNNNCTG	1 cut(s)	1031
AoxI	GGCC	2 cut(s)	603, 964
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	3 cut(s)	278, 290, 829
ApoI	RAATTY	2 cut(s)	371, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
Asp700I	GAANNNNTTC	1 cut(s)	1077
AspS9I	GGNCC	2 cut(s)	964, 1040
AvaII	GGWCC	1 cut(s)	1040
BaeGI	GKGCMC	3 cut(s)	16, 132, 1000
Bbv12I	GWGCWC	1 cut(s)	1000
BbvI	GCAGC	3 cut(s)	290, 302, 816
BccI	CCATC	4 cut(s)	107, 553, 707, 950
BceAI	ACGGC	1 cut(s)	590
BciT130I	CCWGG	1 cut(s)	980
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	2 cut(s)	339, 897
BfmI	CTRYAG	1 cut(s)	732
BfrI	CTTAAG	1 cut(s)	380
BisI	GCNGC	3 cut(s)	279, 291, 830
BlsI	GCNGC	3 cut(s)	280, 292, 831
Bme1390I	CCNGG	1 cut(s)	980
Bme18I	GGWCC	1 cut(s)	1040
BmgT120I	GGNCC	2 cut(s)	964, 1040
BmrFI	CCNGG	1 cut(s)	980
BpuEI	CTTGAG	1 cut(s)	854
Bsa29I	ATCGAT	1 cut(s)	762
BsaBI	GATNNNNATC	1 cut(s)	62
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	690, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	877, 1037
Bse1I	ACTGG	2 cut(s)	601, 1105
Bse3DI	GCAATG	1 cut(s)	986
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	980
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	2 cut(s)	690, 978
BseGI	GGATG	4 cut(s)	80, 564, 568, 955
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	877, 1037
BseMI	GCAATG	1 cut(s)	986
BseMII	CTCAG	3 cut(s)	642, 767, 867
BseNI	ACTGG	2 cut(s)	601, 1105
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	3 cut(s)	16, 132, 1000
BseXI	GCAGC	3 cut(s)	290, 302, 816
BseYI	CCCAGC	1 cut(s)	26
BsgI	GTGCAG	2 cut(s)	297, 309
BshFI	GGCC	2 cut(s)	605, 966
BshVI	ATCGAT	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	1000
BslI	CCNNNNNNNGG	2 cut(s)	877, 1037
BsmAI	GTCTC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	605, 966
Bso31I	GGTCTC	1 cut(s)	440
Bsp1286I	GDGCHC	3 cut(s)	16, 132, 1000
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
BspACI	CCGC	1 cut(s)	1038
BspANI	GGCC	2 cut(s)	605, 966
BspCNI	CTCAG	3 cut(s)	641, 768, 868
BspDI	ATCGAT	1 cut(s)	762
BspPI	GGATC	3 cut(s)	345, 758, 1022
BspQI	GCTCTTC	1 cut(s)	172
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	986
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	601, 1105
BssECI	CCNNGG	2 cut(s)	690, 978
BssMI	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
BssT1I	CCWWGG	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	980
Bst4CI	ACNGT	3 cut(s)	198, 654, 678
Bst6I	CTCTTC	1 cut(s)	172
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstAUI	TGTACA	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	576, 1005
BstDEI	CTNAG	4 cut(s)	585, 628, 776, 876
BstF5I	GGATG	4 cut(s)	80, 564, 568, 955
BstKTI	GATC	8 cut(s)	60, 66, 353, 402, 513, 766, 875, 1030
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 902, 1004
BstNI	CCWGG	1 cut(s)	980
BstSCI	CCNGG	1 cut(s)	978
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	3 cut(s)	16, 132, 1000
BstV1I	GCAGC	3 cut(s)	290, 302, 816
BstX2I	RGATCY	2 cut(s)	350, 1027
BstYI	RGATCY	2 cut(s)	350, 1027
Bsu15I	ATCGAT	1 cut(s)	762
BsuRI	GGCC	2 cut(s)	605, 966
BsuTUI	ATCGAT	1 cut(s)	762
BtgZI	GCGATG	1 cut(s)	819
BtsCI	GGATG	4 cut(s)	80, 564, 568, 955
BtsIMutI	CAGTG	3 cut(s)	520, 594, 659
Cac8I	GCNNGC	2 cut(s)	576, 1005
CaiI	CAGNNNCTG	1 cut(s)	1031
Cfr13I	GGNCC	2 cut(s)	964, 1040
ClaI	ATCGAT	1 cut(s)	762
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	2 cut(s)	342, 547
CviAII	CATG	3 cut(s)	788, 946, 1048
CviQI	GTAC	2 cut(s)	342, 547
DdeI	CTNAG	4 cut(s)	585, 628, 776, 876
DpnI	GATC	8 cut(s)	59, 65, 352, 401, 512, 765, 874, 1029
DpnII	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
DraI	TTTAAA	1 cut(s)	390
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	690
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	1040
EcoRII	CCWGG	1 cut(s)	978
EcoT14I	CCWWGG	1 cut(s)	690
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	3 cut(s)	791, 949, 1051
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FatI	CATG	3 cut(s)	787, 945, 1047
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	279, 291, 830
FokI	GGATG	4 cut(s)	67, 571, 575, 962
Fsp4HI	GCNGC	3 cut(s)	279, 291, 830
FspBI	CTAG	2 cut(s)	339, 897
GluI	GCNGC	3 cut(s)	279, 291, 830
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	605, 966
HgaI	GACGC	1 cut(s)	580
Hin1II	CATG	3 cut(s)	791, 949, 1051
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	2 cut(s)	176, 488
HinfI	GANTC	3 cut(s)	49, 239, 838
Hpy166II	GTNNAC	3 cut(s)	331, 732, 998
Hpy188I	TCNGA	5 cut(s)	631, 682, 843, 877, 1111
Hpy188III	TCNNGA	5 cut(s)	61, 496, 616, 767, 1031
Hpy8I	GTNNAC	3 cut(s)	331, 732, 998
HpyAV	CCTTC	6 cut(s)	63, 591, 793, 868, 1053, 1084
HpyCH4III	ACNGT	3 cut(s)	198, 654, 678
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	7 cut(s)	278, 290, 578, 937, 991, 998, 1126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 902, 1004
HpyF3I	CTNAG	4 cut(s)	585, 628, 776, 876
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	3 cut(s)	791, 949, 1051
Kzo9I	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
LguI	GCTCTTC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	1063
Lsp1109I	GCAGC	3 cut(s)	290, 302, 816
MaeI	CTAG	2 cut(s)	339, 897
MaeII	ACGT	1 cut(s)	423
MalI	GATC	8 cut(s)	59, 65, 352, 401, 512, 765, 874, 1029
MboI	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
MboII	GAAGA	7 cut(s)	69, 159, 248, 331, 458, 893, 1125
MfeI	CAATTG	1 cut(s)	1067
MflI	RGATCY	2 cut(s)	350, 1027
MhlI	GDGCHC	3 cut(s)	16, 132, 1000
MluCI	AATT	5 cut(s)	371, 428, 884, 1067, 1138
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	163, 536
MroXI	GAANNNNTTC	1 cut(s)	1077
MseI	TTAA	8 cut(s)	369, 381, 389, 648, 851, 866, 960, 1144
MslI	CAYNNNNRTG	3 cut(s)	599, 792, 916
MspA1I	CMGCKG	1 cut(s)	710
MspCI	CTTAAG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	980
MunI	CAATTG	1 cut(s)	1067
MvaI	CCWGG	1 cut(s)	980
MwoI	GCNNNNNNNGC	3 cut(s)	287, 902, 1004
NdeII	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
NlaIII	CATG	3 cut(s)	791, 949, 1051
OliI	CACNNNNGTG	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	1077
PfeI	GAWTC	2 cut(s)	239, 838
PflFI	GACNNNGTC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	280, 292, 831
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	978
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	978
PspPI	GGNCC	2 cut(s)	964, 1040
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	2 cut(s)	350, 1027
PsyI	GACNNNGTC	1 cut(s)	222
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	2 cut(s)	343, 548
RsaNI	GTAC	2 cut(s)	342, 547
RseI	CAYNNNNRTG	3 cut(s)	599, 792, 916
SapI	GCTCTTC	1 cut(s)	172
SaqAI	TTAA	8 cut(s)	369, 381, 389, 648, 851, 866, 960, 1144
SatI	GCNGC	3 cut(s)	279, 291, 830
Sau3AI	GATC	8 cut(s)	57, 63, 350, 399, 510, 763, 872, 1027
Sau96I	GGNCC	2 cut(s)	964, 1040
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	980
SduI	GDGCHC	3 cut(s)	16, 132, 1000
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	1040
SmiMI	CAYNNNNRTG	3 cut(s)	599, 792, 916
SmlI	CTYRAG	2 cut(s)	380, 833
SmoI	CTYRAG	2 cut(s)	380, 833
Sse9I	AATT	5 cut(s)	371, 428, 884, 1067, 1138
SsiI	CCGC	1 cut(s)	1038
SspI	AATATT	1 cut(s)	971
SspMI	CTAG	2 cut(s)	339, 897
StyD4I	CCNGG	1 cut(s)	978
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	3 cut(s)	198, 654, 678
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	5 cut(s)	56, 402, 639, 762, 861
TasI	AATT	5 cut(s)	371, 428, 884, 1067, 1138
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	2 cut(s)	239, 838
Tru1I	TTAA	8 cut(s)	369, 381, 389, 648, 851, 866, 960, 1144
Tru9I	TTAA	8 cut(s)	369, 381, 389, 648, 851, 866, 960, 1144
TscAI	CASTG	3 cut(s)	520, 601, 659
TseI	GCWGC	3 cut(s)	278, 290, 829
TspDTI	ATGAA	7 cut(s)	69, 159, 249, 459, 579, 939, 1064
TspRI	CASTG	3 cut(s)	520, 601, 659
Tth111I	GACNNNGTC	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	996
VpaK11BI	GGWCC	1 cut(s)	1040
XapI	RAATTY	2 cut(s)	371, 884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	1077
XspI	CTAG	2 cut(s)	339, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.