Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

14364687 .. 14366517

Gene Structure 1831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCAGCTCTTGGTGCAGCATTTGGGCTGTTGTTTGATGTTGTGAAGAAAGCAGTTGACAAGCCTAGTACCTTTAGATCCCTCTTTGAGAACATTAAATTTTCGCTTAAGTTTTTAAAACCAATGATCGAAAAGATAGGAGAACATAACGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGTATATTATAAGAGAAATGGAGGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAGATCAGTAAGTGGAACTGCATGAAGTTTTATTACAAGGATCAACTTATTGAACTAGATGGGTCTCTTAAAAGACTGTTAGATATATTGATAGTGCAAGGATTAAGAGATGGGAAGGAGACCTTGATTTTGGCAAGAAAACACCAAGACCAACTTATTGAATCGTCAAGAGATGCAAAGGAGACCTTGGTTTTGGCACAAAAGAACAATGACCAGCTTATTGAATCAGCAAAGGATGGGAAAGAGACCTTAGTTCTGGCAAGAAAAAATGCGGACCAACTTATTGATTCGTCAAGAGATGGGAAGGAGACCTTGGATTTGGCAAGACAAGACAATGCCCAACTTATTGAATCAGCAAGGGATGGAAAGGAGACCCTGGTTTTGACCAAGAACATTAAAAGGTTTCTCAAACGAATTGAATGTTTGGTGCGTTGTACTTATAAAGGAAATTCCAGATATCACAGTGGGAGCAGAGTTTCAAAAGCAAGCAGAAGCTCAGGAAGAGGTCGAATTTTGGAGACATCCAACTTAAGAGTTTACCGTTTTGCCGAGTTGAAGGATGCTACTCAGAATTTCAGGCAAGGTGAGTTTGGTTGTGGAGGTTTTGGGAGTATGTACAAGGGTTGGATGGATGAAAAGACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGACATTTTACTCAGAAAGTATCGAAAGCATTAAACAGTGGAAGCTGGAGCTGAACTTCCTAGGAAGGGTTTCTCATCCGAACCTTGTCAAGCTATTGGGATACTGTTGTGAGAAAAAGGAGATGTTCTTAATTTATGAATTCATTCCGAATGGAAGCTTACATAGTCATCTTTTTAACAGCATTTCTGTCGAGGAACCACTTTCTTGGGACATCAGACTCAAAATAGCCATTGGAGCTGCTCGGGGATTAAATTTATTGCACAGTATACAAATCACACACAGAGATGTCAAACCCTCAAATATATTGCTTGATGAGATTTGTGCTATCTTTTCTTTCTATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

430

Amino Acids

48.65

Weight (kDa)

9.12

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 136	1.5e-26	Arabidopsis broad-spectrum mildew resistance protein RPW8
PK_Tyr_Ser-Thr	PF07714	283 - 421	2.7e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	285 - 421	1.6e-20	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	218, 702
AccI	GTMKAC	1 cut(s)	1213
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	2 cut(s)	99, 309
AcoI	YGGCCR	1 cut(s)	933
AcsI	RAATTY	6 cut(s)	125, 709, 771, 832, 1085, 1198
AfaI	GTAC	3 cut(s)	97, 697, 878
AfiI	CCNNNNNNNGG	1 cut(s)	1012
AflII	CTTAAG	2 cut(s)	134, 790
AgsI	TTSAA	7 cut(s)	314, 422, 485, 611, 680, 741, 817
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	9 cut(s)	35, 244, 478, 756, 991, 997, 1039, 1104, 1184
AluI	AGCT	9 cut(s)	35, 244, 478, 756, 991, 997, 1039, 1104, 1184
Alw26I	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
AlwI	GGATC	2 cut(s)	99, 309
Ama87I	CYCGRG	1 cut(s)	1188
AoxI	GGCC	1 cut(s)	933
ApeKI	GCWGC	3 cut(s)	32, 44, 1184
ApoI	RAATTY	6 cut(s)	125, 709, 771, 832, 1085, 1198
ArsI	GACNNNNNNTTYG	8 cut(s)	373, 405, 436, 468, 562, 594, 625, 657
Asp700I	GAANNNNTTC	2 cut(s)	1015, 1089
AspA2I	CCTAGG	1 cut(s)	1006
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	857
AvaI	CYCGRG	1 cut(s)	1188
AvaII	GGWCC	1 cut(s)	535
AvrII	CCTAGG	1 cut(s)	1006
BaeI	ACNNNNGTAYC	2 cut(s)	1039, 1072
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbvI	GCAGC	3 cut(s)	44, 56, 1171
BccI	CCATC	6 cut(s)	314, 365, 491, 554, 617, 883
BceAI	ACGGC	1 cut(s)	920
BcgI	CGANNNNNNTGC	2 cut(s)	1117, 1151
BciT130I	CCWGG	1 cut(s)	638
BciVI	GTATCC	1 cut(s)	1040
BcoDI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BfaI	CTAG	3 cut(s)	93, 317, 1007
BfrI	CTTAAG	2 cut(s)	134, 790
BfuI	GTATCC	1 cut(s)	1040
BisI	GCNGC	3 cut(s)	33, 45, 1185
BlnI	CCTAGG	1 cut(s)	1006
BlsI	GCNGC	3 cut(s)	34, 46, 1186
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	1 cut(s)	535
BmeT110I	CYCGRG	1 cut(s)	1188
BmgT120I	GGNCC	1 cut(s)	535
BmiI	GGNNCC	1 cut(s)	1143
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	2 cut(s)	424, 811
BpmI	CTGGAG	1 cut(s)	1013
Bpu10I	CCTNAGC	1 cut(s)	757
BsaI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsaJI	CCNNGG	4 cut(s)	447, 573, 636, 1006
Bsc4I	CCNNNNNNNGG	1 cut(s)	1012
Bse1I	ACTGG	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	4 cut(s)	447, 573, 636, 1006
BseGI	GGATG	7 cut(s)	502, 628, 782, 826, 894, 898, 1021
BseLI	CCNNNNNNNGG	1 cut(s)	1012
BseMII	CTCAG	3 cut(s)	771, 842, 972
BseNI	ACTGG	1 cut(s)	931
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	3 cut(s)	44, 56, 1171
BsgI	GTGCAG	2 cut(s)	51, 63
BshFI	GGCC	1 cut(s)	935
BsiHKCI	CYCGRG	1 cut(s)	1188
BslFI	GGGAC	1 cut(s)	1169
BslI	CCNNNNNNNGG	1 cut(s)	1012
BsmAI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BsmFI	GGGAC	1 cut(s)	1169
BsnI	GGCC	1 cut(s)	935
Bso31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsoBI	CYCGRG	1 cut(s)	1188
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	4 cut(s)	104, 153, 264, 301
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	1 cut(s)	935
BspCNI	CTCAG	3 cut(s)	770, 841, 971
BspLI	GGNNCC	1 cut(s)	1143
BspPI	GGATC	2 cut(s)	99, 309
BspTI	CTTAAG	2 cut(s)	134, 790
BspTNI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	1 cut(s)	931
BssECI	CCNNGG	4 cut(s)	447, 573, 636, 1006
BssMI	GATC	4 cut(s)	104, 153, 264, 301
BssNAI	GTATAC	1 cut(s)	1214
BssT1I	CCWWGG	3 cut(s)	447, 573, 1006
Bst1107I	GTATAC	1 cut(s)	1214
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	6 cut(s)	339, 725, 803, 984, 1052, 1211
Bst6I	CTCTTC	1 cut(s)	757
BstAFI	CTTAAG	2 cut(s)	134, 790
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	748, 906
BstDEI	CTNAG	5 cut(s)	511, 757, 828, 915, 958
BstF5I	GGATG	7 cut(s)	502, 628, 782, 826, 894, 898, 1021
BstKTI	GATC	4 cut(s)	107, 156, 267, 304
BstMAI	GTCTC	8 cut(s)	194, 330, 374, 437, 500, 563, 626, 773
BstMBI	GATC	4 cut(s)	104, 153, 264, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 1181
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	636
BstV1I	GCAGC	3 cut(s)	44, 56, 1171
BstX2I	RGATCY	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	1152
BstYI	RGATCY	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	1214
BsuI	GTATCC	1 cut(s)	1040
BsuRI	GGCC	1 cut(s)	935
BtsCI	GGATG	7 cut(s)	502, 628, 782, 826, 894, 898, 1021
BtsIMutI	CAGTG	3 cut(s)	730, 924, 989
Cac8I	GCNNGC	2 cut(s)	748, 906
Cfr13I	GGNCC	1 cut(s)	535
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	3 cut(s)	96, 696, 877
CviAII	CATG	1 cut(s)	283
CviQI	GTAC	3 cut(s)	96, 696, 877
DdeI	CTNAG	5 cut(s)	511, 757, 828, 915, 958
DpnI	GATC	4 cut(s)	106, 155, 266, 303
DpnII	GATC	4 cut(s)	104, 153, 264, 301
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	933
Eam1104I	CTCTTC	1 cut(s)	757
EarI	CTCTTC	1 cut(s)	757
Eco130I	CCWWGG	3 cut(s)	447, 573, 1006
Eco31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
Eco32I	GATATC	1 cut(s)	719
Eco47I	GGWCC	1 cut(s)	535
Eco88I	CYCGRG	1 cut(s)	1188
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	719
EcoT14I	CCWWGG	3 cut(s)	447, 573, 1006
ErhI	CCWWGG	3 cut(s)	447, 573, 1006
FaeI	CATG	1 cut(s)	286
FalI	AAGNNNNNCTT	8 cut(s)	368, 400, 399, 431, 431, 463, 557, 589
FaqI	GGGAC	1 cut(s)	1169
FatI	CATG	1 cut(s)	282
FblI	GTMKAC	1 cut(s)	1213
Fnu4HI	GCNGC	3 cut(s)	33, 45, 1185
FokI	GGATG	7 cut(s)	509, 635, 769, 833, 901, 905, 1008
Fsp4HI	GCNGC	3 cut(s)	33, 45, 1185
FspBI	CTAG	3 cut(s)	93, 317, 1007
GluI	GCNGC	3 cut(s)	33, 45, 1185
GsuI	CTGGAG	1 cut(s)	1013
HaeIII	GGCC	1 cut(s)	935
HgaI	GACGC	1 cut(s)	910
Hin1II	CATG	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	2 cut(s)	242, 1102
HinfI	GANTC	5 cut(s)	422, 485, 548, 611, 1164
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	3 cut(s)	85, 799, 1214
Hpy188I	TCNGA	5 cut(s)	831, 961, 1026, 1095, 1163
Hpy188III	TCNNGA	6 cut(s)	250, 429, 555, 714, 759, 946
Hpy8I	GTNNAC	3 cut(s)	85, 799, 1214
HpyAV	CCTTC	5 cut(s)	370, 559, 811, 921, 1005
HpyCH4III	ACNGT	6 cut(s)	339, 725, 803, 984, 1052, 1211
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	7 cut(s)	32, 44, 282, 358, 437, 908, 1207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 1181
HpyF3I	CTNAG	5 cut(s)	511, 757, 828, 915, 958
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	104, 153, 264, 301
LmnI	GCTCC	3 cut(s)	729, 994, 1181
Lsp1109I	GCAGC	3 cut(s)	44, 56, 1171
LweI	GCATC	2 cut(s)	424, 811
MaeI	CTAG	3 cut(s)	93, 317, 1007
MaeII	ACGT	1 cut(s)	177
MalI	GATC	4 cut(s)	106, 155, 266, 303
MboI	GATC	4 cut(s)	104, 153, 264, 301
MboII	GAAGA	3 cut(s)	85, 212, 774
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	9 cut(s)	125, 182, 675, 709, 771, 832, 1077, 1085, 1198
MlyI	GAGTC	1 cut(s)	1158
MmeI	TCCRAC	2 cut(s)	810, 866
MnlI	CCTC	7 cut(s)	119, 223, 226, 758, 854, 1132, 1252
MroXI	GAANNNNTTC	2 cut(s)	1015, 1089
MslI	CAYNNNNRTG	2 cut(s)	929, 1230
MspCI	CTTAAG	2 cut(s)	134, 790
MspR9I	CCNGG	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	41, 1181
NdeII	GATC	4 cut(s)	104, 153, 264, 301
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	1143
NmeAIII	GCCGAG	1 cut(s)	835
PdmI	GAANNNNTTC	2 cut(s)	1015, 1089
PfeI	GAWTC	4 cut(s)	422, 485, 548, 611
PkrI	GCNGC	3 cut(s)	34, 46, 1186
PleI	GAGTC	1 cut(s)	1158
PpsI	GAGTC	1 cut(s)	1158
PsiI	TTATAA	2 cut(s)	218, 702
Psp6I	CCWGG	1 cut(s)	636
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	1143
PspPI	GGNCC	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	3 cut(s)	97, 697, 878
RsaNI	GTAC	3 cut(s)	96, 696, 877
RseI	CAYNNNNRTG	2 cut(s)	929, 1230
SatI	GCNGC	3 cut(s)	33, 45, 1185
Sau3AI	GATC	4 cut(s)	104, 153, 264, 301
Sau96I	GGNCC	1 cut(s)	535
SchI	GAGTC	1 cut(s)	1158
ScrFI	CCNGG	1 cut(s)	638
SfaNI	GCATC	2 cut(s)	424, 811
SinI	GGWCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	2 cut(s)	929, 1230
SmlI	CTYRAG	2 cut(s)	134, 790
SmoI	CTYRAG	2 cut(s)	134, 790
Sse9I	AATT	9 cut(s)	125, 182, 675, 709, 771, 832, 1077, 1085, 1198
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	3 cut(s)	93, 317, 1007
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	3 cut(s)	447, 573, 1006
TaaI	ACNGT	6 cut(s)	339, 725, 803, 984, 1052, 1211
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	4 cut(s)	156, 769, 969, 1137
TasI	AATT	9 cut(s)	125, 182, 675, 709, 771, 832, 1077, 1085, 1198
TatI	WGTACW	2 cut(s)	695, 876
TfiI	GAWTC	4 cut(s)	422, 485, 548, 611
TscAI	CASTG	3 cut(s)	730, 931, 989
TseI	GCWGC	3 cut(s)	32, 44, 1184
TspDTI	ATGAA	5 cut(s)	213, 299, 909, 1078, 1098
TspRI	CASTG	3 cut(s)	730, 931, 989
Vha464I	CTTAAG	2 cut(s)	134, 790
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	6 cut(s)	125, 709, 771, 832, 1085, 1198
XmaJI	CCTAGG	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	1213
XmnI	GAANNNNTTC	2 cut(s)	1015, 1089
XspI	CTAG	3 cut(s)	93, 317, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.