RLG00000017336
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
15453220 .. 15455786
2567 bp
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UTR
Exon/CDS
Intron
RLM00000017336

Sequence Viewer

Length: 1749 bp
ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCAGCTCTTGGTGCAGCATTTGGGCTGTTGTTTGATGTTGTGAAGAAAGCAGTTGACAAGCCTAGTACCTTTAGATCCCTCTTTGAGAACATTAAATTTTCGCTGAAGTTTTTAAAACCAATGATCGAAAAGATAGGAGAACATAACGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGTATATTATAAGAGAAATGGAGGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAGATCAGTAAGTGGAACTGCATGAAGTTCTATTACACGGATCAACTTATTGAACTAGATGGGTCTCTTAAAAGACTGTTAGATATATTGATAGTGCAAGGATTAAGAGATGGGAAGGAGACCTTGATTTTGGCAAGAAAACACCAAGACCAACTTATTGAATCGGCAAGAGATGCAAAGGAGACCTTGGTTTTGGCACAAAAGAACAATGACCAGCTTATTGAATCAGCAAAGGATGGGAAAGAGACCTTAGTTCTGGCAAGACAAAATGCGGACCAACTTATTGATTCGTCAAGAGATGGGAAGGAGACCTTGGATTTGGCAAGACAAAACAATGTCCAGCTTATTGAATCAGCAAGGGATGGAAAGGAGACCCTGGTTTTGACCAAGAACATTAAAAGGTTTCTCAAACGAATTGAATGTTCGGTGCGTTGTACTTATAAAGGCAATTCCAGATATCACAGTGGGAGCAGAGTTTCAAAAGCAAGCAGAAGCTCAGGAAGAGATCGAATTTTGGAGACATCCAACTTAAGAGTTTACCGTTTTGCCGAGTTGAAGGATGCTACTCAGAATTTCAGGCAAGGTGAGTTTGGTTGTGGAGGCTTTGGGAGTATGTACAAGGGTTGGATGGATGAAAAGACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGACATTTTACTCAGAAAGTATCGAAAGCATTAAACAGTGGCAGCTGGAGCTGAACTTCCTAGGAAGGGTTTCTCATCCGAACCTTGTCAAGCTATTGGGATACTGTTGTGAGAAAAAGGAGATGTTCTTAGTTTATGAATTCATTCCAAATGGAAGCTTACATAGTCATCTTTTTAACAGCCTTTCTGTCGAGGAACCACTTTCTTGGGACATCAGACTCAAAATAGCTATTGGAGCTGCTCGGGGATTAAATTTCTTGCACAGTATACAAATCACACACAGAGATGTCAAACCCTCAAATATATTGCTTGATGAGGATTACAATACAAAACTATCAGATTTTTCCTTGGCAAAATGGGGCTCAGCTGATGGAGACTTAGATGTGTCTACAGGGGTTTGTGGCACAATAGGATATATCGATCCAGAATACCTGAGAACAGGTCATGTGTGTGTGAAGAGCGATGTGTATAGCTTCGGTGTTTTGCTGCTTGAGATTCTGACAGGATTAAAGTCCTTCGATTTAAGCCGATCTGAGGAACAATTTAGTCTGGCTAGGTGGGCTATACCAGTTTTCTGTGATGAAACAAAGTTGCAAACCATCATGGATGAGCAGATTAAAGGCCAATATTCCTCCCAGGAAGCACTGCAGAGTGCACAGCTTGCTCTAAAATGTTTAGAAACAGATCCTGAAAGCCGACCCTCCATGAAAGAAGTTGTGGAGCAATTGGAAAACATTCAGGCATTGAAGAGAGAACCAGACCAGTCCAAGCTTACTACTATGCAGTATTCTTCTAATTCTTAA

Protein Analysis

583

Amino Acids

65.62

Weight (kDa)

6.56

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 136 2.7e-26 Arabidopsis broad-spectrum mildew resistance protein RPW8
PK_Tyr_Ser-Thr PF07714 283 - 558 2.9e-45 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 285 - 556 2.1e-44 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 218, 702
AccI GTMKAC 2 cut(s) 1213, 1334
AciI CCGC 1 cut(s) 533
AclWI GGATC 4 cut(s) 99, 309, 1361, 1625
AcoI YGGCCR 1 cut(s) 933
AcsI RAATTY 5 cut(s) 125, 771, 832, 1085, 1198
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 3 cut(s) 97, 697, 878
AfiI CCNNNNNNNGG 2 cut(s) 1012, 1480
AflII CTTAAG 1 cut(s) 790
AgsI TTSAA 8 cut(s) 314, 422, 485, 611, 680, 741, 817, 1693
AjnI CCWGG 2 cut(s) 636, 1581
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
Alw21I GWGCWC 1 cut(s) 1603
Alw26I GTCTC 9 cut(s) 194, 330, 374, 437, 500, 563, 626, 773, 1314
Alw44I GTGCAC 1 cut(s) 1599
AlwI GGATC 4 cut(s) 99, 309, 1361, 1625
AlwNI CAGNNNCTG 1 cut(s) 1634
Ama87I CYCGRG 1 cut(s) 1188
AoxI GGCC 2 cut(s) 933, 1567
ApaLI GTGCAC 1 cut(s) 1599
ApeKI GCWGC 5 cut(s) 32, 44, 988, 1184, 1432
ApoI RAATTY 5 cut(s) 125, 771, 832, 1085, 1198
ArsI GACNNNNNNTTYG 8 cut(s) 373, 405, 436, 468, 562, 594, 625, 657
Asp700I GAANNNNTTC 3 cut(s) 1015, 1089, 1680
AspA2I CCTAGG 1 cut(s) 1006
AspS9I GGNCC 1 cut(s) 535
AsuHPI GGTGA 1 cut(s) 857
AvaI CYCGRG 1 cut(s) 1188
AvaII GGWCC 1 cut(s) 535
AvrII CCTAGG 1 cut(s) 1006
BaeGI GKGCMC 1 cut(s) 1603
BaeI ACNNNNGTAYC 2 cut(s) 1039, 1072
BanII GRGCYC 1 cut(s) 1310
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
Bbv12I GWGCWC 1 cut(s) 1603
BbvI GCAGC 5 cut(s) 44, 56, 1000, 1171, 1419
BccI CCATC 8 cut(s) 314, 365, 491, 554, 617, 883, 1310, 1553
BceAI ACGGC 1 cut(s) 920
BciT130I CCWGG 2 cut(s) 638, 1583
BciVI GTATCC 1 cut(s) 1040
BcoDI GTCTC 9 cut(s) 194, 330, 374, 437, 500, 563, 626, 773, 1314
BfaI CTAG 4 cut(s) 93, 317, 1007, 1500
BfmI CTRYAG 2 cut(s) 1335, 1592
BfrI CTTAAG 1 cut(s) 790
BfuI GTATCC 1 cut(s) 1040
BisI GCNGC 5 cut(s) 33, 45, 989, 1185, 1433
BlnI CCTAGG 1 cut(s) 1006
BlpI GCTNAGC 1 cut(s) 1309
BlsI GCNGC 5 cut(s) 34, 46, 990, 1186, 1434
Bme1390I CCNGG 2 cut(s) 638, 1583
Bme18I GGWCC 1 cut(s) 535
BmeT110I CYCGRG 1 cut(s) 1188
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 1 cut(s) 1143
BmrFI CCNGG 2 cut(s) 638, 1583
BmsI GCATC 2 cut(s) 424, 811
BpmI CTGGAG 1 cut(s) 1013
Bpu10I CCTNAGC 1 cut(s) 757
Bpu1102I GCTNAGC 1 cut(s) 1309
BpuEI CTTGAG 1 cut(s) 1457
Bsa29I ATCGAT 1 cut(s) 1365
BsaI GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
BsaJI CCNNGG 6 cut(s) 447, 573, 636, 1006, 1293, 1581
Bsc4I CCNNNNNNNGG 2 cut(s) 1012, 1480
Bse1I ACTGG 3 cut(s) 931, 1514, 1708
BseBI CCWGG 2 cut(s) 638, 1583
BseCI ATCGAT 1 cut(s) 1365
BseDI CCNNGG 6 cut(s) 447, 573, 636, 1006, 1293, 1581
BseGI GGATG 8 cut(s) 502, 628, 782, 826, 894, 898, 1021, 1558
BseLI CCNNNNNNNGG 2 cut(s) 1012, 1480
BseMII CTCAG 6 cut(s) 771, 842, 972, 1323, 1370, 1470
BseNI ACTGG 3 cut(s) 931, 1514, 1708
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 1603
BseXI GCAGC 5 cut(s) 44, 56, 1000, 1171, 1419
BsgI GTGCAG 2 cut(s) 51, 63
BshFI GGCC 2 cut(s) 935, 1569
BshVI ATCGAT 1 cut(s) 1365
BsiHKAI GWGCWC 1 cut(s) 1603
BsiHKCI CYCGRG 1 cut(s) 1188
BslFI GGGAC 1 cut(s) 1169
BslI CCNNNNNNNGG 2 cut(s) 1012, 1480
BsmAI GTCTC 9 cut(s) 194, 330, 374, 437, 500, 563, 626, 773, 1314
BsmFI GGGAC 1 cut(s) 1169
BsnI GGCC 2 cut(s) 935, 1569
Bso31I GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
BsoBI CYCGRG 1 cut(s) 1188
Bsp1286I GDGCHC 2 cut(s) 1310, 1603
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
Bsp1720I GCTNAGC 1 cut(s) 1309
BspACI CCGC 1 cut(s) 533
BspANI GGCC 2 cut(s) 935, 1569
BspCNI CTCAG 6 cut(s) 770, 841, 971, 1322, 1371, 1471
BspDI ATCGAT 1 cut(s) 1365
BspLI GGNNCC 1 cut(s) 1143
BspMAI CTGCAG 1 cut(s) 1596
BspPI GGATC 4 cut(s) 99, 309, 1361, 1625
BspQI GCTCTTC 1 cut(s) 1397
BspTI CTTAAG 1 cut(s) 790
BspTNI GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 3 cut(s) 931, 1514, 1708
BssECI CCNNGG 6 cut(s) 447, 573, 636, 1006, 1293, 1581
BssMI GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
BssNAI GTATAC 1 cut(s) 1214
BssT1I CCWWGG 4 cut(s) 447, 573, 1006, 1293
Bst1107I GTATAC 1 cut(s) 1214
Bst2UI CCWGG 2 cut(s) 638, 1583
Bst4CI ACNGT 6 cut(s) 339, 725, 803, 984, 1052, 1211
Bst6I CTCTTC 3 cut(s) 757, 1397, 1688
BstAFI CTTAAG 1 cut(s) 790
BstAPI GCANNNNNTGC 2 cut(s) 434, 1607
BstAUI TGTACA 1 cut(s) 876
BstC8I GCNNGC 3 cut(s) 748, 906, 1608
BstF5I GGATG 8 cut(s) 502, 628, 782, 826, 894, 898, 1021, 1558
BstKTI GATC 8 cut(s) 107, 156, 267, 304, 769, 1369, 1478, 1633
BstMAI GTCTC 9 cut(s) 194, 330, 374, 437, 500, 563, 626, 773, 1314
BstMBI GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
BstMWI GCNNNNNNNGC 6 cut(s) 41, 434, 994, 1181, 1505, 1607
BstNI CCWGG 2 cut(s) 638, 1583
BstSCI CCNGG 2 cut(s) 636, 1581
BstSFI CTRYAG 2 cut(s) 1335, 1592
BstSLI GKGCMC 1 cut(s) 1603
BstV1I GCAGC 5 cut(s) 44, 56, 1000, 1171, 1419
BstX2I RGATCY 2 cut(s) 104, 1630
BstXI CCANNNNNNTGG 1 cut(s) 1152
BstYI RGATCY 2 cut(s) 104, 1630
BstZ17I GTATAC 1 cut(s) 1214
Bsu15I ATCGAT 1 cut(s) 1365
BsuI GTATCC 1 cut(s) 1040
BsuRI GGCC 2 cut(s) 935, 1569
BsuTUI ATCGAT 1 cut(s) 1365
BtgZI GCGATG 1 cut(s) 1422
BtsCI GGATG 8 cut(s) 502, 628, 782, 826, 894, 898, 1021, 1558
BtsI GCAGTG 1 cut(s) 1589
BtsIMutI CAGTG 4 cut(s) 730, 924, 989, 1589
Cac8I GCNNGC 3 cut(s) 748, 906, 1608
CaiI CAGNNNCTG 1 cut(s) 1634
Cfr13I GGNCC 1 cut(s) 535
ClaI ATCGAT 1 cut(s) 1365
CseI GACGC 1 cut(s) 910
Csp6I GTAC 3 cut(s) 96, 696, 877
CviAII CATG 4 cut(s) 283, 1391, 1549, 1651
CviQI GTAC 3 cut(s) 96, 696, 877
DpnI GATC 8 cut(s) 106, 155, 266, 303, 768, 1368, 1477, 1632
DpnII GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
DraI TTTAAA 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 933
Eam1104I CTCTTC 3 cut(s) 757, 1397, 1688
EarI CTCTTC 3 cut(s) 757, 1397, 1688
Eco130I CCWWGG 4 cut(s) 447, 573, 1006, 1293
Eco24I GRGCYC 1 cut(s) 1310
Eco31I GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
Eco32I GATATC 1 cut(s) 719
Eco47I GGWCC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 1188
EcoRI GAATTC 1 cut(s) 1085
EcoRII CCWGG 2 cut(s) 636, 1581
EcoRV GATATC 1 cut(s) 719
EcoT14I CCWWGG 4 cut(s) 447, 573, 1006, 1293
EcoT38I GRGCYC 1 cut(s) 1310
ErhI CCWWGG 4 cut(s) 447, 573, 1006, 1293
FaeI CATG 4 cut(s) 286, 1394, 1552, 1654
FalI AAGNNNNNCTT 8 cut(s) 368, 400, 399, 431, 431, 463, 557, 589
FaqI GGGAC 1 cut(s) 1169
FatI CATG 4 cut(s) 282, 1390, 1548, 1650
FblI GTMKAC 2 cut(s) 1213, 1334
Fnu4HI GCNGC 5 cut(s) 33, 45, 989, 1185, 1433
FokI GGATG 8 cut(s) 509, 635, 769, 833, 901, 905, 1008, 1565
FriOI GRGCYC 1 cut(s) 1310
Fsp4HI GCNGC 5 cut(s) 33, 45, 989, 1185, 1433
FspBI CTAG 4 cut(s) 93, 317, 1007, 1500
GluI GCNGC 5 cut(s) 33, 45, 989, 1185, 1433
GsuI CTGGAG 1 cut(s) 1013
HaeIII GGCC 2 cut(s) 935, 1569
HgaI GACGC 1 cut(s) 910
Hin1II CATG 4 cut(s) 286, 1394, 1552, 1654
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 3 cut(s) 242, 1102, 1715
HinfI GANTC 6 cut(s) 422, 485, 548, 611, 1164, 1441
HphI GGTGA 1 cut(s) 857
Hpy166II GTNNAC 5 cut(s) 85, 799, 1214, 1335, 1601
Hpy188I TCNGA 7 cut(s) 831, 961, 1026, 1163, 1285, 1446, 1480
Hpy188III TCNNGA 7 cut(s) 250, 555, 714, 759, 946, 1370, 1634
Hpy8I GTNNAC 5 cut(s) 85, 799, 1214, 1335, 1601
HpyAV CCTTC 6 cut(s) 370, 559, 811, 921, 1005, 1471
HpyCH4III ACNGT 6 cut(s) 339, 725, 803, 984, 1052, 1211
HpyCH4IV ACGT 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 434, 994, 1181, 1505, 1607
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 4 cut(s) 286, 1394, 1552, 1654
Kzo9I GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
LguI GCTCTTC 1 cut(s) 1397
LmnI GCTCC 4 cut(s) 729, 994, 1181, 1666
Lsp1109I GCAGC 5 cut(s) 44, 56, 1000, 1171, 1419
LweI GCATC 2 cut(s) 424, 811
MaeI CTAG 4 cut(s) 93, 317, 1007, 1500
MaeII ACGT 1 cut(s) 177
MalI GATC 8 cut(s) 106, 155, 266, 303, 768, 1368, 1477, 1632
MboI GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
MboII GAAGA 6 cut(s) 85, 212, 774, 1414, 1705, 1728
MfeI CAATTG 1 cut(s) 1670
MflI RGATCY 2 cut(s) 104, 1630
MhlI GDGCHC 2 cut(s) 1310, 1603
MlyI GAGTC 1 cut(s) 1158
MmeI TCCRAC 2 cut(s) 810, 866
MroXI GAANNNNTTC 3 cut(s) 1015, 1089, 1680
MslI CAYNNNNRTG 3 cut(s) 929, 1230, 1395
MspA1I CMGCKG 2 cut(s) 991, 1313
MspCI CTTAAG 1 cut(s) 790
MspR9I CCNGG 2 cut(s) 638, 1583
MunI CAATTG 1 cut(s) 1670
MvaI CCWGG 2 cut(s) 638, 1583
MwoI GCNNNNNNNGC 6 cut(s) 41, 434, 994, 1181, 1505, 1607
NdeII GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
NlaIII CATG 4 cut(s) 286, 1394, 1552, 1654
NlaIV GGNNCC 1 cut(s) 1143
NmeAIII GCCGAG 1 cut(s) 835
PciSI GCTCTTC 1 cut(s) 1397
PdmI GAANNNNTTC 3 cut(s) 1015, 1089, 1680
PfeI GAWTC 5 cut(s) 422, 485, 548, 611, 1441
PkrI GCNGC 5 cut(s) 34, 46, 990, 1186, 1434
PleI GAGTC 1 cut(s) 1158
PpsI GAGTC 1 cut(s) 1158
PsiI TTATAA 2 cut(s) 218, 702
Psp6I CCWGG 2 cut(s) 636, 1581
PspGI CCWGG 2 cut(s) 636, 1581
PspN4I GGNNCC 1 cut(s) 1143
PspPI GGNCC 1 cut(s) 535
PstI CTGCAG 1 cut(s) 1596
PstNI CAGNNNCTG 1 cut(s) 1634
PsuI RGATCY 2 cut(s) 104, 1630
PvuII CAGCTG 2 cut(s) 991, 1313
RsaI GTAC 3 cut(s) 97, 697, 878
RsaNI GTAC 3 cut(s) 96, 696, 877
RseI CAYNNNNRTG 3 cut(s) 929, 1230, 1395
SapI GCTCTTC 1 cut(s) 1397
SatI GCNGC 5 cut(s) 33, 45, 989, 1185, 1433
Sau3AI GATC 8 cut(s) 104, 153, 264, 301, 766, 1366, 1475, 1630
Sau96I GGNCC 1 cut(s) 535
SchI GAGTC 1 cut(s) 1158
ScrFI CCNGG 2 cut(s) 638, 1583
SduI GDGCHC 2 cut(s) 1310, 1603
SfaNI GCATC 2 cut(s) 424, 811
SfcI CTRYAG 2 cut(s) 1335, 1592
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 3 cut(s) 929, 1230, 1395
SmlI CTYRAG 2 cut(s) 790, 1436
SmoI CTYRAG 2 cut(s) 790, 1436
SsiI CCGC 1 cut(s) 533
SspI AATATT 1 cut(s) 1574
SspMI CTAG 4 cut(s) 93, 317, 1007, 1500
StyD4I CCNGG 2 cut(s) 636, 1581
StyI CCWWGG 4 cut(s) 447, 573, 1006, 1293
TaaI ACNGT 6 cut(s) 339, 725, 803, 984, 1052, 1211
TaiI ACGT 1 cut(s) 180
TaqI TCGA 6 cut(s) 156, 769, 969, 1137, 1365, 1464
TatI WGTACW 2 cut(s) 695, 876
TfiI GAWTC 5 cut(s) 422, 485, 548, 611, 1441
TscAI CASTG 4 cut(s) 730, 931, 989, 1596
TseI GCWGC 5 cut(s) 32, 44, 988, 1184, 1432
TspDTI ATGAA 7 cut(s) 213, 299, 909, 1078, 1098, 1542, 1667
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 4 cut(s) 730, 931, 989, 1596
Vha464I CTTAAG 1 cut(s) 790
VneI GTGCAC 1 cut(s) 1599
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 5 cut(s) 125, 771, 832, 1085, 1198
XmaJI CCTAGG 1 cut(s) 1006
XmiI GTMKAC 2 cut(s) 1213, 1334
XmnI GAANNNNTTC 3 cut(s) 1015, 1089, 1680
XspI CTAG 4 cut(s) 93, 317, 1007, 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.