Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

15626247 .. 15633269

Gene Structure 7023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG178100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCTGTTCTTGGAGCAGCCTTTGGGGTGTTGTTTGATGTTGTCAAGAAAGCAGTTGACAAGCCTACTGCCTTTAAATCCCTCCTTGAGAATATCAAGTTTTCTCTGGAGTTTCTAAAGCCTGTGATTGAAAAGATAGGAGAGCATAACGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGCATCTTATAACAGAAATGGAGGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAAGTCATGGCTCACAATGGGAACAAAATTCCCAAAGCTAGTAGAAGAGCAGGGAGAAATCGAGTTTTGGAGGCATCCAACTTAATAGTCTACCGTTTTGCCGAGTTGGTCAATGCTACTGAGAATTTCAAGTCTAGTGGGGGAGACTTTGTGGGGACTTTCAAGGGTTGGGTGGATGAGAATACGCTTGCACCTTCTAAGGTTGGCACTGGAATGGCCGTTGCTGTCAAGAGATTGAACCCAGAAAGTGTCGAAGACTTTAAACAGTGGCAGCTCTCAGTGAACTTCCTCGGAAGGCTTTCTCATCCCAACCTTGTCAAGCTCTTGGGATACTGTCGTGAGAATAAGGAGTTGCTCTTAGTATATGAGTTCATGCCGAATGGAAGCTTATTTAATCATCTGTCTAGAAGGATCCCTGATGAGGAACCATTATCTTGGGACAACAGACTCAAGATAGCTACTGGAGCTGCTCAGGGCTTAGCTTTCTTGCACAGTTTTCAAATCATAGACAGAGATGTCAAACCCTCTAATATACTGCTTGATGAAAATTACAATCCAAAAATCTCAAGTTTTTACCTGGCAAAATGGTGGCCTGCTGATGGAGAGTTTTATGAGTCAACTCGGATTTGTGGCTCACAGGCTTATGTTGATCCAGAATACATGAGAACAGGTCATTTATCTGTGAAGAGCGACGTGTACAGCTTCGGCGTGGTGCTGCTTGAAATTCTGACAGGGTTAACGTCCAACGACTTTAGCAGCCCTGAAGGACAGATTGCTCTGGTTGACTGGGCTATACCACTCCTATCTGATGAAACAAAGTTGCAAACCATCATGGATACGCGGACAGATGGTCAGTATTCCTCCCAGGAAGCATTACAGACAGCACAGCTTACTCTAAAATGTCTAGAAAGAGATCCGGAAAGCCGACCTTCCATGAAAGAAGTTGTGGAGGAATTGGCGTGCATTCAGGCAATGAAGGAAAACCCGAACCAGTCCGAGCTTAAACCTACGCCCTCTCCTTCTAGTTCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

431

Amino Acids

48.04

Weight (kDa)

5.41

Isoelectric Point (pI)

34.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 96	1.5e-18	Arabidopsis broad-spectrum mildew resistance protein RPW8
PK_Tyr_Ser-Thr	PF07714	143 - 406	6.7e-41	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	156 - 404	1.2e-39	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AasI	GACNNNNNNGTC	1 cut(s)	776
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	1 cut(s)	1102
AccIII	TCCGGA	1 cut(s)	1177
AciI	CCGC	1 cut(s)	1102
AclWI	GGATC	4 cut(s)	667, 680, 905, 1169
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	3 cut(s)	288, 385, 984
AcuI	CTGAAG	1 cut(s)	1044
AfaI	GTAC	1 cut(s)	959
AfiI	CCNNNNNNNGG	2 cut(s)	682, 860
AflIII	ACRYGT	1 cut(s)	954
AgsI	TTSAA	6 cut(s)	158, 391, 424, 499, 761, 983
AhdI	GACNNNNNGTC	1 cut(s)	1110
AjiI	CACGTC	1 cut(s)	955
AjnI	CCWGG	2 cut(s)	837, 1125
Alw26I	GTCTC	2 cut(s)	194, 399
AlwI	GGATC	4 cut(s)	667, 680, 905, 1169
Aor13HI	TCCGGA	1 cut(s)	1177
AoxI	GGCC	2 cut(s)	477, 851
ApeKI	GCWGC	5 cut(s)	44, 532, 728, 976, 1017
ApoI	RAATTY	3 cut(s)	288, 385, 984
Asp700I	GAANNNNTTC	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	583, 616
BamHI	GGATCC	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	522
BbvI	GCAGC	5 cut(s)	56, 544, 715, 963, 1029
BccI	CCATC	3 cut(s)	854, 1097, 1103
BceAI	ACGGC	1 cut(s)	464
BciT130I	CCWGG	2 cut(s)	839, 1127
BciVI	GTATCC	2 cut(s)	584, 1090
BcoDI	GTCTC	2 cut(s)	194, 399
BfaI	CTAG	5 cut(s)	300, 396, 666, 1166, 1284
BfuI	GTATCC	2 cut(s)	584, 1090
BisI	GCNGC	5 cut(s)	45, 533, 729, 977, 1018
BlpI	GCTNAGC	1 cut(s)	739
BlsI	GCNGC	5 cut(s)	46, 534, 730, 978, 1019
Bme1390I	CCNGG	2 cut(s)	839, 1127
BmeRI	GACNNNNNGTC	1 cut(s)	1110
BmgBI	CACGTC	1 cut(s)	955
BmiI	GGNNCC	2 cut(s)	674, 687
BmrFI	CCNGG	2 cut(s)	839, 1127
BmrI	ACTGGG	1 cut(s)	1057
BmsI	GCATC	2 cut(s)	220, 344
BmuI	ACTGGG	1 cut(s)	1057
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	2 cut(s)	155, 744
Bpu10I	CCTNAGC	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	739
BpuEI	CTTGAG	3 cut(s)	134, 695, 811
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	550, 1125
BsaWI	WCCGGW	1 cut(s)	1177
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 1261, 1291
Bsc4I	CCNNNNNNNGG	2 cut(s)	682, 860
Bse1I	ACTGG	4 cut(s)	475, 727, 1052, 1252
Bse3DI	GCAATG	1 cut(s)	1239
BseAI	TCCGGA	1 cut(s)	1177
BseBI	CCWGG	2 cut(s)	839, 1127
BseDI	CCNNGG	2 cut(s)	550, 1125
BseGI	GGATG	3 cut(s)	335, 442, 565
BseLI	CCNNNNNNNGG	2 cut(s)	682, 860
BseMI	GCAATG	1 cut(s)	1239
BseMII	CTCAG	3 cut(s)	372, 552, 746
BseNI	ACTGG	4 cut(s)	475, 727, 1052, 1252
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	5 cut(s)	56, 544, 715, 963, 1029
Bsh1236I	CGCG	1 cut(s)	1102
BshFI	GGCC	2 cut(s)	479, 853
BsiSI	CCGG	1 cut(s)	1178
BslFI	GGGAC	2 cut(s)	430, 713
BslI	CCNNNNNNNGG	2 cut(s)	682, 860
BsmAI	GTCTC	2 cut(s)	194, 399
BsmFI	GGGAC	2 cut(s)	430, 713
BsmI	GAATGC	1 cut(s)	1224
BsnI	GGCC	2 cut(s)	479, 853
Bso31I	GGTCTC	1 cut(s)	194
Bsp13I	TCCGGA	1 cut(s)	1177
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	3 cut(s)	672, 910, 1174
Bsp1720I	GCTNAGC	1 cut(s)	739
BspACI	CCGC	1 cut(s)	1102
BspANI	GGCC	2 cut(s)	479, 853
BspCNI	CTCAG	3 cut(s)	373, 551, 745
BspEI	TCCGGA	1 cut(s)	1177
BspFNI	CGCG	1 cut(s)	1102
BspLI	GGNNCC	2 cut(s)	674, 687
BspPI	GGATC	4 cut(s)	667, 680, 905, 1169
BspQI	GCTCTTC	2 cut(s)	301, 941
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	1239
BsrGI	TGTACA	1 cut(s)	957
BsrI	ACTGG	4 cut(s)	475, 727, 1052, 1252
BssECI	CCNNGG	2 cut(s)	550, 1125
BssMI	GATC	3 cut(s)	672, 910, 1174
Bst2UI	CCWGG	2 cut(s)	839, 1127
Bst4CI	ACNGT	4 cut(s)	356, 528, 596, 755
Bst6I	CTCTTC	2 cut(s)	301, 941
BstAUI	TGTACA	1 cut(s)	957
BstC8I	GCNNGC	3 cut(s)	450, 855, 1222
BstDEI	CTNAG	6 cut(s)	381, 459, 538, 619, 732, 739
BstF5I	GGATG	3 cut(s)	335, 442, 565
BstFNI	CGCG	1 cut(s)	1102
BstKTI	GATC	3 cut(s)	675, 913, 1177
BstMAI	GTCTC	2 cut(s)	194, 399
BstMBI	GATC	3 cut(s)	672, 910, 1174
BstMWI	GCNNNNNNNGC	1 cut(s)	725
BstNI	CCWGG	2 cut(s)	839, 1127
BstSCI	CCNGG	2 cut(s)	837, 1125
BstUI	CGCG	1 cut(s)	1102
BstV1I	GCAGC	5 cut(s)	56, 544, 715, 963, 1029
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	2 cut(s)	672, 1174
BstXI	CCANNNNNNTGG	1 cut(s)	696
BstYI	RGATCY	2 cut(s)	672, 1174
BsuI	GTATCC	2 cut(s)	584, 1090
BsuRI	GGCC	2 cut(s)	479, 853
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	3 cut(s)	335, 442, 565
BtsIMutI	CAGTG	3 cut(s)	468, 533, 546
Cac8I	GCNNGC	3 cut(s)	450, 855, 1222
Csp6I	GTAC	1 cut(s)	958
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	5 cut(s)	268, 634, 922, 1093, 1195
CviQI	GTAC	1 cut(s)	958
DdeI	CTNAG	6 cut(s)	381, 459, 538, 619, 732, 739
DpnI	GATC	3 cut(s)	674, 912, 1176
DpnII	GATC	3 cut(s)	672, 910, 1174
DraI	TTTAAA	2 cut(s)	103, 523
DrdI	GACNNNNNNGTC	1 cut(s)	776
DriI	GACNNNNNGTC	1 cut(s)	1110
DseDI	GACNNNNNNGTC	1 cut(s)	776
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	2 cut(s)	301, 941
Eam1105I	GACNNNNNGTC	1 cut(s)	1110
EarI	CTCTTC	2 cut(s)	301, 941
Eco31I	GGTCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	1044
EcoRII	CCWGG	2 cut(s)	837, 1125
FaeI	CATG	5 cut(s)	271, 637, 925, 1096, 1198
FalI	AAGNNNNNCTT	2 cut(s)	1174, 1206
FaqI	GGGAC	2 cut(s)	430, 713
FatI	CATG	5 cut(s)	267, 633, 921, 1092, 1194
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	5 cut(s)	45, 533, 729, 977, 1018
FokI	GGATG	3 cut(s)	322, 449, 552
Fsp4HI	GCNGC	5 cut(s)	45, 533, 729, 977, 1018
FspBI	CTAG	5 cut(s)	300, 396, 666, 1166, 1284
GluI	GCNGC	5 cut(s)	45, 533, 729, 977, 1018
GsuI	CTGGAG	2 cut(s)	155, 744
HaeIII	GGCC	2 cut(s)	479, 853
HapII	CCGG	1 cut(s)	1178
Hin1II	CATG	5 cut(s)	271, 637, 925, 1096, 1198
HincII	GTYRAC	4 cut(s)	85, 879, 999, 1045
HindII	GTYRAC	4 cut(s)	85, 879, 999, 1045
HindIII	AAGCTT	2 cut(s)	242, 646
HinfI	GANTC	2 cut(s)	708, 875
HpaI	GTTAAC	1 cut(s)	999
HpaII	CCGG	1 cut(s)	1178
Hpy166II	GTNNAC	7 cut(s)	85, 352, 544, 879, 958, 999, 1045
Hpy188I	TCNGA	5 cut(s)	554, 885, 990, 1069, 1258
Hpy8I	GTNNAC	7 cut(s)	85, 352, 544, 879, 958, 999, 1045
Hpy99I	CGWCG	1 cut(s)	956
HpyAV	CCTTC	7 cut(s)	465, 549, 663, 1019, 1200, 1231, 1290
HpyCH4III	ACNGT	4 cut(s)	356, 528, 596, 755
HpyCH4IV	ACGT	3 cut(s)	177, 954, 1001
HpyCH4V	TGCA	4 cut(s)	452, 751, 1084, 1224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	725
HpyF3I	CTNAG	6 cut(s)	381, 459, 538, 619, 732, 739
HpySE526I	ACGT	3 cut(s)	177, 954, 1001
Hsp92II	CATG	5 cut(s)	271, 637, 925, 1096, 1198
Kpn2I	TCCGGA	1 cut(s)	1177
KspAI	GTTAAC	1 cut(s)	999
Kzo9I	GATC	3 cut(s)	672, 910, 1174
LguI	GCTCTTC	2 cut(s)	301, 941
LmnI	GCTCC	2 cut(s)	41, 725
Lsp1109I	GCAGC	5 cut(s)	56, 544, 715, 963, 1029
LweI	GCATC	2 cut(s)	220, 344
MaeI	CTAG	5 cut(s)	300, 396, 666, 1166, 1284
MaeII	ACGT	3 cut(s)	177, 954, 1001
MalI	GATC	3 cut(s)	674, 912, 1176
MboI	GATC	3 cut(s)	672, 910, 1174
MboII	GAAGA	4 cut(s)	212, 318, 527, 958
MflI	RGATCY	2 cut(s)	672, 1174
MluCI	AATT	6 cut(s)	182, 288, 385, 808, 984, 1214
MlyI	GAGTC	2 cut(s)	702, 884
MmeI	TCCRAC	2 cut(s)	363, 1029
MroI	TCCGGA	1 cut(s)	1177
MroXI	GAANNNNTTC	1 cut(s)	559
MseI	TTAA	6 cut(s)	102, 344, 522, 654, 998, 1263
MslI	CAYNNNNRTG	1 cut(s)	473
MspI	CCGG	1 cut(s)	1178
MspR9I	CCNGG	2 cut(s)	839, 1127
Mva1269I	GAATGC	1 cut(s)	1224
MvaI	CCWGG	2 cut(s)	839, 1127
MvnI	CGCG	1 cut(s)	1102
MwoI	GCNNNNNNNGC	1 cut(s)	725
NdeII	GATC	3 cut(s)	672, 910, 1174
NlaIII	CATG	5 cut(s)	271, 637, 925, 1096, 1198
NlaIV	GGNNCC	2 cut(s)	674, 687
NmeAIII	GCCGAG	1 cut(s)	388
PciSI	GCTCTTC	2 cut(s)	301, 941
PctI	GAATGC	1 cut(s)	1224
PdmI	GAANNNNTTC	1 cut(s)	559
PkrI	GCNGC	5 cut(s)	46, 534, 730, 978, 1019
PleI	GAGTC	2 cut(s)	702, 883
PpsI	GAGTC	2 cut(s)	702, 883
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	837, 1125
PspGI	CCWGG	2 cut(s)	837, 1125
PspN4I	GGNNCC	2 cut(s)	674, 687
PsuI	RGATCY	2 cut(s)	672, 1174
RsaI	GTAC	1 cut(s)	959
RsaNI	GTAC	1 cut(s)	958
RseI	CAYNNNNRTG	1 cut(s)	473
SapI	GCTCTTC	2 cut(s)	301, 941
SaqAI	TTAA	6 cut(s)	102, 344, 522, 654, 998, 1263
SatI	GCNGC	5 cut(s)	45, 533, 729, 977, 1018
Sau3AI	GATC	3 cut(s)	672, 910, 1174
SchI	GAGTC	2 cut(s)	702, 884
ScrFI	CCNGG	2 cut(s)	839, 1127
SfaNI	GCATC	2 cut(s)	220, 344
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	3 cut(s)	113, 710, 826
SmoI	CTYRAG	3 cut(s)	113, 710, 826
Sse9I	AATT	6 cut(s)	182, 288, 385, 808, 984, 1214
SsiI	CCGC	1 cut(s)	1102
SspMI	CTAG	5 cut(s)	300, 396, 666, 1166, 1284
StyD4I	CCNGG	2 cut(s)	837, 1125
TaaI	ACNGT	4 cut(s)	356, 528, 596, 755
TaiI	ACGT	3 cut(s)	180, 957, 1004
TaqI	TCGA	2 cut(s)	322, 513
TasI	AATT	6 cut(s)	182, 288, 385, 808, 984, 1214
TatI	WGTACW	1 cut(s)	957
Tru1I	TTAA	6 cut(s)	102, 344, 522, 654, 998, 1263
Tru9I	TTAA	6 cut(s)	102, 344, 522, 654, 998, 1263
TscAI	CASTG	3 cut(s)	475, 533, 546
TseI	GCWGC	5 cut(s)	44, 532, 728, 976, 1017
TspDTI	ATGAA	6 cut(s)	213, 622, 819, 1086, 1211, 1250
TspRI	CASTG	3 cut(s)	475, 533, 546
XapI	RAATTY	3 cut(s)	288, 385, 984
XbaI	TCTAGA	2 cut(s)	665, 1165
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	559
XspI	CTAG	5 cut(s)	300, 396, 666, 1166, 1284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.