Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

8699424 .. 8700299

Gene Structure 876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g15350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCTGCTCTTGGTGCAGCATTTGGTCTGTTGTTTGATGCTATCAAGAAAGCAGTTGACAAGCCTAGTACCTTTAAACCCCTCTATGAGAACATCAAGTTTTCGCTGAAGTTTTTAAAACCAATGATCGAAAAGATAGGAGAGCATAATGTGGAATTGGGTCTCCCAGATGAAGAAATAAAGTACATTATAAGAGAAATGGAGGGTGTAAAGCTTGTCCAGAAGTCATCAAAGGTTAGTAAGTGGAACTGCATGAAGTTTTATTACACGGATCAACTTATTGAACTGGATGGGTCTCTTAAAAGACTGTTAGATATATTGTTAGTTCAAGGAGTAAGAGATGGCAAGGAGACCTTGATTTTGGCAAGAAAACACCAAGAGCAACTTACTGAATCGGCAAGAGATGCAAAGGAGACCTTAGTTTTGGCACAAAAGAACAATGACCAGCTTACTGAATCAGCAAAGGATGGGAAAGAGACCTTAGTTCTGGCCAGACAAAATGCTGAGCAACTCATTAAAACGTCAAGAGATGGAAAGGAGACAGTGGATTTGGCAAAACTAAACAATGAACGGCTTATTGAATCAGCAAGGGATGGGAAGGAGACCCTGGTTTTGGCCAAGAACATTAAAAGGTTTCTCAAACGAATTGAATGTTTGGTGCGTTGTACTTATAAAGGTAATAATGTGCACTCCAACACCAAGTACTGTGCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

248

Amino Acids

27.93

Weight (kDa)

9.08

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 138	4.6e-25	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	218, 699
AclWI	GGATC	1 cut(s)	306
AcoI	YGGCCR	2 cut(s)	516, 642
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	4 cut(s)	97, 212, 694, 731
AfiI	CCNNNNNNNGG	1 cut(s)	640
AgsI	TTSAA	4 cut(s)	311, 356, 608, 677
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	2 cut(s)	241, 475
AluI	AGCT	2 cut(s)	241, 475
Alw21I	GWGCWC	1 cut(s)	717
Alw26I	GTCTC	7 cut(s)	194, 327, 371, 434, 497, 560, 623
Alw44I	GTGCAC	1 cut(s)	713
AlwI	GGATC	1 cut(s)	306
AoxI	GGCC	2 cut(s)	516, 642
ApaLI	GTGCAC	1 cut(s)	713
ApeKI	GCWGC	2 cut(s)	32, 44
ArsI	GACNNNNNNTTYG	8 cut(s)	370, 402, 433, 465, 559, 591, 622, 654
BaeGI	GKGCMC	1 cut(s)	717
BalI	TGGCCA	2 cut(s)	518, 644
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
Bbv12I	GWGCWC	1 cut(s)	717
BbvI	GCAGC	2 cut(s)	19, 56
BccI	CCATC	5 cut(s)	311, 362, 488, 551, 614
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	1 cut(s)	635
BcoDI	GTCTC	7 cut(s)	194, 327, 371, 434, 497, 560, 623
BfaI	CTAG	1 cut(s)	93
BisI	GCNGC	2 cut(s)	33, 45
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	2 cut(s)	34, 46
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	1 cut(s)	635
BmrFI	CCNGG	1 cut(s)	635
BmsI	GCATC	2 cut(s)	55, 421
Bpu1102I	GCTNAGC	1 cut(s)	531
BsaI	GGTCTC	6 cut(s)	194, 327, 371, 434, 497, 623
BsaJI	CCNNGG	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	1 cut(s)	633
BseGI	GGATG	3 cut(s)	322, 499, 625
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	717
BseXI	GCAGC	2 cut(s)	19, 56
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	2 cut(s)	518, 644
BsiHKAI	GWGCWC	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	7 cut(s)	194, 327, 371, 434, 497, 560, 623
BsnI	GGCC	2 cut(s)	518, 644
Bso31I	GGTCTC	6 cut(s)	194, 327, 371, 434, 497, 623
Bsp1286I	GDGCHC	1 cut(s)	717
Bsp143I	GATC	2 cut(s)	153, 298
Bsp1720I	GCTNAGC	1 cut(s)	531
BspANI	GGCC	2 cut(s)	518, 644
BspCNI	CTCAG	1 cut(s)	523
BspPI	GGATC	1 cut(s)	306
BspTNI	GGTCTC	6 cut(s)	194, 327, 371, 434, 497, 623
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	633
BssMI	GATC	2 cut(s)	153, 298
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	3 cut(s)	336, 571, 734
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstDEI	CTNAG	3 cut(s)	445, 508, 531
BstF5I	GGATG	3 cut(s)	322, 499, 625
BstKTI	GATC	2 cut(s)	156, 301
BstMAI	GTCTC	7 cut(s)	194, 327, 371, 434, 497, 560, 623
BstMBI	GATC	2 cut(s)	153, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 431
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	633
BstSLI	GKGCMC	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	19, 56
BsuRI	GGCC	2 cut(s)	518, 644
BtsCI	GGATG	3 cut(s)	322, 499, 625
BtsIMutI	CAGTG	1 cut(s)	576
Csp6I	GTAC	4 cut(s)	96, 211, 693, 730
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	6 cut(s)	91, 241, 475, 518, 601, 644
CviKI_1	RGCY	6 cut(s)	91, 241, 475, 518, 601, 644
CviQI	GTAC	4 cut(s)	96, 211, 693, 730
DdeI	CTNAG	3 cut(s)	445, 508, 531
DpnI	GATC	2 cut(s)	155, 300
DpnII	GATC	2 cut(s)	153, 298
DraI	TTTAAA	2 cut(s)	103, 144
EaeI	YGGCCR	2 cut(s)	516, 642
Eco31I	GGTCTC	6 cut(s)	194, 327, 371, 434, 497, 623
Eco57I	CTGAAG	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	633
FaeI	CATG	1 cut(s)	283
FaiI	YATR	9 cut(s)	8, 114, 174, 218, 281, 344, 699, 740, 742
FalI	AAGNNNNNCTT	6 cut(s)	365, 397, 396, 428, 428, 460
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	33, 45
FokI	GGATG	3 cut(s)	329, 506, 632
Fsp4HI	GCNGC	2 cut(s)	33, 45
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	2 cut(s)	33, 45
HaeIII	GGCC	2 cut(s)	518, 644
Hin1II	CATG	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	3 cut(s)	419, 482, 608
Hpy166II	GTNNAC	2 cut(s)	85, 715
Hpy188III	TCNNGA	3 cut(s)	73, 247, 552
Hpy8I	GTNNAC	2 cut(s)	85, 715
HpyAV	CCTTC	1 cut(s)	619
HpyCH4III	ACNGT	3 cut(s)	336, 571, 734
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	4 cut(s)	44, 279, 434, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 431
HpyF3I	CTNAG	3 cut(s)	445, 508, 531
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	153, 298
LpnPI	CCDG	8 cut(s)	207, 260, 299, 485, 500, 532, 620, 647
Lsp1109I	GCAGC	2 cut(s)	19, 56
LweI	GCATC	2 cut(s)	55, 421
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	548
MalI	GATC	2 cut(s)	155, 300
MboI	GATC	2 cut(s)	153, 298
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	717
MlsI	TGGCCA	2 cut(s)	518, 644
MluCI	AATT	2 cut(s)	182, 672
MluNI	TGGCCA	2 cut(s)	518, 644
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	2 cut(s)	119, 223
Mox20I	TGGCCA	2 cut(s)	518, 644
MscI	TGGCCA	2 cut(s)	518, 644
MseI	TTAA	5 cut(s)	102, 143, 327, 543, 654
Msp20I	TGGCCA	2 cut(s)	518, 644
MspR9I	CCNGG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	2 cut(s)	41, 431
NdeII	GATC	2 cut(s)	153, 298
NlaIII	CATG	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	419, 482, 608
PkrI	GCNGC	2 cut(s)	34, 46
PsiI	TTATAA	2 cut(s)	218, 699
Psp6I	CCWGG	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	633
RsaI	GTAC	4 cut(s)	97, 212, 694, 731
RsaNI	GTAC	4 cut(s)	96, 211, 693, 730
SaqAI	TTAA	5 cut(s)	102, 143, 327, 543, 654
SatI	GCNGC	2 cut(s)	33, 45
Sau3AI	GATC	2 cut(s)	153, 298
ScaI	AGTACT	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	717
SfaNI	GCATC	2 cut(s)	55, 421
Sse9I	AATT	2 cut(s)	182, 672
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	633
TaaI	ACNGT	3 cut(s)	336, 571, 734
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	182, 672
TatI	WGTACW	3 cut(s)	210, 692, 729
TfiI	GAWTC	3 cut(s)	419, 482, 608
Tru1I	TTAA	5 cut(s)	102, 143, 327, 543, 654
Tru9I	TTAA	5 cut(s)	102, 143, 327, 543, 654
TscAI	CASTG	1 cut(s)	576
TseI	GCWGC	2 cut(s)	32, 44
TspDTI	ATGAA	3 cut(s)	213, 296, 609
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	1 cut(s)	576
VneI	GTGCAC	1 cut(s)	713
XspI	CTAG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.