Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Reverse (-)

10455094 .. 10458315

Gene Structure 3222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0121200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCGCGTCCAGGTTCATAAAGTGTGTGACTGTTGGCGACGGAGCTGTGGGCAAGACGTGTCTGCTTATCTCCTACACCAGCAACACCTTCCCCACCGATTACGTGCCTACTGTTTTCGACAATTTTAGTGCAAACGTGGTTGTCAATGGGAGCACTGTTAACCTTGGGTTGTGGGATACAGCTGGACAGGAGGACTATAATAGATTAAGACCCTTGAGTTATCGTGGGGCTGATGTTTTTATACTGGCATTCTCCCTGATTAGCAAGGCCAGCTATGAAAATGTGTCCAAGAAGTGGATCCCGGAATTGAAGCACTATGCGCCTGGTGTTCCAATCATTCTTGTTGGAACCAAGCTTGATCTGCGGGATGACAAGCAGTTCTTTATTGACCATCCGGGTGCTGTGCCTATTACTACCGCTCAAGGAGAGGAGCTCAGGAAGCTAATTGGAGCACCAGCATACATTGAGTGCAGTTCAAAAACACAGCAGAATGTGAAAGGGGTGTTCGATGCAGCCATAAGGGTTGTCCTTCAACCTCCCAAGCAGAAGAAAAAGAAAGGGAAAGCGCAGAAGGCATGCTCCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.56

Weight (kDa)

9.32

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	2.7e-49	Ras family
Roc	PF08477	8 - 121	4.3e-24	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	297
AccBSI	CCGCTC	1 cut(s)	422
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	367, 420
AclWI	GGATC	2 cut(s)	295, 308
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	313, 480, 536
AjiI	CACGTC	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	11, 325
AluBI	AGCT	6 cut(s)	47, 185, 276, 358, 436, 445
AluI	AGCT	6 cut(s)	47, 185, 276, 358, 436, 445
Alw21I	GWGCWC	3 cut(s)	158, 438, 457
AlwI	GGATC	2 cut(s)	295, 308
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	515
AspLEI	GCGC	3 cut(s)	8, 325, 571
AsuC2I	CCSGG	2 cut(s)	305, 399
BamHI	GGATCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	3 cut(s)	158, 438, 457
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	13, 327
BciVI	GTATCC	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	305, 399
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	4 cut(s)	13, 305, 327, 399
BmgBI	CACGTC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	302, 352
BmrFI	CCNGG	4 cut(s)	13, 305, 327, 399
BmsI	GCATC	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	238, 408
BpuMI	CCSGG	2 cut(s)	305, 399
BsaAI	YACGTR	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	13, 327
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	2 cut(s)	376, 394
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	272
BsiHKAI	GWGCWC	3 cut(s)	158, 438, 457
BsiSI	CCGG	2 cut(s)	305, 398
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	3 cut(s)	158, 438, 457
Bsp143I	GATC	2 cut(s)	300, 361
BspACI	CCGC	2 cut(s)	367, 420
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	450
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	302, 352
BspPI	GGATC	2 cut(s)	295, 308
BsrBI	CCGCTC	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	300, 361
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	13, 327
Bst4CI	ACNGT	3 cut(s)	34, 115, 160
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	274, 580
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	376, 394
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	8, 325, 571
BstKTI	GATC	2 cut(s)	303, 364
BstMBI	GATC	2 cut(s)	300, 361
BstMWI	GCNNNNNNNGC	5 cut(s)	273, 322, 364, 442, 575
BstNI	CCWGG	2 cut(s)	13, 327
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	4 cut(s)	11, 303, 325, 397
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	272
BtrI	CACGTC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	376, 394
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	274, 580
CfoI	GCGC	3 cut(s)	8, 325, 571
CviAII	CATG	1 cut(s)	579
CviJI	RGCY	9 cut(s)	47, 185, 233, 272, 276, 358, 436, 445, 518
CviKI_1	RGCY	9 cut(s)	47, 185, 233, 272, 276, 358, 436, 445, 518
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	2 cut(s)	302, 363
DpnII	GATC	2 cut(s)	300, 361
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	11, 325
EcoT14I	CCWWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	582
FaiI	YATR	9 cut(s)	20, 201, 245, 279, 321, 463, 521, 580, 587
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FatI	CATG	1 cut(s)	578
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	381, 383
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	516
GlaI	GCGC	3 cut(s)	7, 324, 570
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	2 cut(s)	305, 398
HhaI	GCGC	3 cut(s)	8, 325, 571
Hin1II	CATG	1 cut(s)	582
Hin6I	GCGC	3 cut(s)	6, 323, 569
HinP1I	GCGC	3 cut(s)	6, 323, 569
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	356
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	305, 398
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	100, 542, 568
HpyCH4III	ACNGT	3 cut(s)	34, 115, 160
HpyCH4IV	ACGT	3 cut(s)	59, 105, 138
HpyCH4V	TGCA	3 cut(s)	134, 474, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	273, 322, 364, 442, 575
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	3 cut(s)	59, 105, 138
Hsp92II	CATG	1 cut(s)	582
HspAI	GCGC	3 cut(s)	6, 323, 569
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	300, 361
LmnI	GCTCC	5 cut(s)	44, 153, 433, 452, 587
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	502
MaeII	ACGT	3 cut(s)	59, 105, 138
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	2 cut(s)	302, 363
MbiI	CCGCTC	1 cut(s)	422
MboI	GATC	2 cut(s)	300, 361
MboII	GAAGA	1 cut(s)	562
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	3 cut(s)	158, 438, 457
MluCI	AATT	3 cut(s)	124, 308, 447
MmeI	TCCRAC	1 cut(s)	328
MnlI	CCTC	3 cut(s)	187, 424, 549
MseI	TTAA	2 cut(s)	162, 209
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	2 cut(s)	305, 398
MspR9I	CCNGG	4 cut(s)	13, 305, 327, 399
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	2 cut(s)	13, 327
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	5 cut(s)	273, 322, 364, 442, 575
NciI	CCSGG	2 cut(s)	305, 399
NdeII	GATC	2 cut(s)	300, 361
NlaIII	CATG	1 cut(s)	582
NlaIV	GGNNCC	2 cut(s)	302, 352
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	582
PaeI	GCATGC	1 cut(s)	582
PctI	GAATGC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	1 cut(s)	517
Ppu21I	YACGTR	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	11, 325
PspGI	CCWGG	2 cut(s)	11, 325
PspN4I	GGNNCC	2 cut(s)	302, 352
PsuI	RGATCY	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	162, 209
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	300, 361
ScrFI	CCNGG	4 cut(s)	13, 305, 327, 399
SduI	GDGCHC	3 cut(s)	158, 438, 457
SfaNI	GCATC	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	217, 423
SmoI	CTYRAG	2 cut(s)	217, 423
SphI	GCATGC	1 cut(s)	582
Sse9I	AATT	3 cut(s)	124, 308, 447
SsiI	CCGC	2 cut(s)	367, 420
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	4 cut(s)	11, 303, 325, 397
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	3 cut(s)	34, 115, 160
TaiI	ACGT	3 cut(s)	62, 108, 141
TaqI	TCGA	2 cut(s)	120, 510
TasI	AATT	3 cut(s)	124, 308, 447
Tru1I	TTAA	2 cut(s)	162, 209
Tru9I	TTAA	2 cut(s)	162, 209
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	7, 294
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	163
Van91I	CCANNNNNTGG	1 cut(s)	297
XceI	RCATGY	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.