Rh2BG179300
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
15914618 .. 15917829
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG179300.1

Sequence Viewer

Length: 1548 bp
ATGGTTATAGTAGGGGAGTTCGTAGGAGGTGCTGCGCTTGGAGCAGCATTTGGGGTATTGTTTGATGTTGTGAATGAAGCAGTTGACAAGCCTACTGCCTTGAAATCCCTCCTTGAGAATATCAAATTTTCGCTACACTTTCTGAAACCAGTGATTGAAAAGATAGGAGAGCATAATGTGGTATTGGGTCTCCCAGATGAAGAAATAAAGTATCTTATAACAGAAATGGAGGAGGGTGTAAAGCTCGTCCGCAAGTCATCAAAGATTAGTAAGTGGAATTGCATGAAGTTTTACTACACGGATCAACTTGTTGAAGTGGACGGGTCTCTCAAAAGACTGATAGAAATACTGAAGGTACAAGGAGTACGGGATGCAAAGGAGACCTTGATTTTGGCACGAGAAAACCATGACCAACTTATCGAATCGGCAAGAGATACAAAGGAGACCTTCGTTTTGGCACAAAGCAATACTATCCAGCTTATTGAATCAGCAAAGGATGGGAAGGAGACCTTAGTTTTGGCTAAACAAAATGCTGACCAACTGATTGAATCGTCAAGAGATGGAAAGGAGACCTTAGAGTTGGCAAGACAAAACAATAACCAGCTTGTTGAATCAGTAAGAGATGGGAAGGAGACCTTGGATTTGGCAAAACAAAACAATGACCAGCTTGTTGAATCCGCAAGAGATGGGAAGGAGACATTGGTTTTGGCCAAGGAAATTAAAAGGTTGCTCAAACGAATTAAACATCTGGTGCCTTGTACTTGCAAAGGGAAATTCAGATATCACAGTGGGAAGAGAGGTTCAAAAGTGAGCAGAACTGCAGGAAGAAGTCGAACATTGGAGACATTCAACTTAAGAGTTTTCCGTTTTGCAGAATTAAAGGCTGCTACTGGGAATTTCAGGCTTGATGCCATTCTTCGTAAAGGAGGCTTTGGGACGGTTTTCAAAGGTTGGGTGGATGAGACGACACTTACACCTTCTAAGCTGGTTGGCACTGGAATGGCTATTGCTGTCAAGAGATTGAACACAGAAAGTATCCAAGGCGTTGAACAGTGGGAGAATTACAATCCAAAAATCTCAAGTTTTTACCTGGCAAAATGGTGGCCTGCTGATGGAGAGTTTTATGAGTCAACTCGGATTTGTGGCTCACAGGCTTATGTTGATCCAGAATACATGAGAACAGGTCATTTATCTGTGAAGAGCGACGTGTACAGCTTCGGCGTGGTGCTGCTTGAAATTCTGACAGGGTTAACGTCCAACGACTTTAGCAGCCCTGAAGGACAGATTGCTCTGGTTGACTGGGCTATACCACTCCTATCTGATGAAACAAAGTTGCAAACCATCATGGATACGCGGACAGATGGTCAGTATTCCTCCCAGGAAGCATTACAGACAGCACAGCTTACTCTAAAATGTCTAGAAAGAGATCCGGAAAGCCGACCTTCCATGAAAGAAGTTGTGGAGGAATTGGCGTGCATTCAGGCAATGAAGGAAAACCCGAACCAGTCCGAGCTTAAACCTACGCCCTCTCCTTCTAGTTCTCAATGA

Protein Analysis

515

Amino Acids

57.59

Weight (kDa)

6.22

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 6 - 138 5.3e-26 Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase PF00069 355 - 488 3.6e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 356 - 490 8.6e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 751
AccII CGCG 1 cut(s) 1354
AccIII TCCGGA 1 cut(s) 1429
AciI CCGC 3 cut(s) 250, 678, 1354
AclWI GGATC 3 cut(s) 309, 1157, 1421
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 4 cut(s) 125, 773, 895, 1236
AcuI CTGAAG 2 cut(s) 371, 1296
AfaI GTAC 4 cut(s) 357, 366, 760, 1211
AfiI CCNNNNNNNGG 1 cut(s) 1112
AflII CTTAAG 1 cut(s) 853
AflIII ACRYGT 1 cut(s) 1206
AhdI GACNNNNNGTC 1 cut(s) 1362
AjiI CACGTC 1 cut(s) 1207
AjnI CCWGG 2 cut(s) 1089, 1377
AjuI GAANNNNNNNTTGG 4 cut(s) 620, 652, 683, 715
AloI GAACNNNNNNTCC 2 cut(s) 784, 816
AluBI AGCT 8 cut(s) 244, 478, 604, 667, 985, 1215, 1402, 1513
AluI AGCT 8 cut(s) 244, 478, 604, 667, 985, 1215, 1402, 1513
AlwI GGATC 3 cut(s) 309, 1157, 1421
Aor13HI TCCGGA 1 cut(s) 1429
AoxI GGCC 2 cut(s) 708, 1103
ApeKI GCWGC 5 cut(s) 32, 44, 884, 1228, 1269
ApoI RAATTY 4 cut(s) 125, 773, 895, 1236
AspLEI GCGC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 710
BanI GGYRCC 1 cut(s) 751
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BauI CACGAG 1 cut(s) 396
BbvI GCAGC 5 cut(s) 19, 56, 871, 1215, 1281
BccI CCATC 7 cut(s) 491, 554, 617, 680, 1106, 1349, 1355
BciT130I CCWGG 2 cut(s) 1091, 1379
BciVI GTATCC 2 cut(s) 1046, 1342
BfaI CTAG 2 cut(s) 1418, 1536
BfmI CTRYAG 1 cut(s) 819
BfrI CTTAAG 1 cut(s) 853
BfuI GTATCC 2 cut(s) 1046, 1342
BisI GCNGC 5 cut(s) 33, 45, 885, 1229, 1270
BlsI GCNGC 5 cut(s) 34, 46, 886, 1230, 1271
Bme1390I CCNGG 2 cut(s) 1091, 1379
BmeRI GACNNNNNGTC 1 cut(s) 1362
BmgBI CACGTC 1 cut(s) 1207
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 2 cut(s) 1091, 1379
BmrI ACTGGG 2 cut(s) 900, 1309
BmsI GCATC 2 cut(s) 361, 898
BmuI ACTGGG 2 cut(s) 900, 1309
BpuEI CTTGAG 2 cut(s) 134, 1063
BsaI GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
BsaJI CCNNGG 4 cut(s) 636, 711, 1039, 1377
BsaWI WCCGGW 1 cut(s) 1429
BsaXI ACNNNNNCTCC 2 cut(s) 1513, 1543
Bsc4I CCNNNNNNNGG 1 cut(s) 1112
Bse1I ACTGG 5 cut(s) 149, 895, 1000, 1304, 1504
Bse3DI GCAATG 1 cut(s) 1491
BseAI TCCGGA 1 cut(s) 1429
BseBI CCWGG 2 cut(s) 1091, 1379
BseDI CCNNGG 4 cut(s) 636, 711, 1039, 1377
BseGI GGATG 3 cut(s) 376, 502, 964
BseLI CCNNNNNNNGG 1 cut(s) 1112
BseMI GCAATG 1 cut(s) 1491
BseNI ACTGG 5 cut(s) 149, 895, 1000, 1304, 1504
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 5 cut(s) 19, 56, 871, 1215, 1281
Bsh1236I CGCG 1 cut(s) 1354
BshFI GGCC 2 cut(s) 710, 1105
BshNI GGYRCC 1 cut(s) 751
BsiSI CCGG 1 cut(s) 1430
BslFI GGGAC 1 cut(s) 949
BslI CCNNNNNNNGG 1 cut(s) 1112
BsmBI CGTCTC 1 cut(s) 956
BsmFI GGGAC 1 cut(s) 949
BsmI GAATGC 1 cut(s) 1476
BsnI GGCC 2 cut(s) 710, 1105
Bso31I GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
Bsp13I TCCGGA 1 cut(s) 1429
Bsp1407I TGTACA 1 cut(s) 1209
Bsp143I GATC 3 cut(s) 301, 1162, 1426
BspACI CCGC 3 cut(s) 250, 678, 1354
BspANI GGCC 2 cut(s) 710, 1105
BspEI TCCGGA 1 cut(s) 1429
BspFNI CGCG 1 cut(s) 1354
BspLI GGNNCC 1 cut(s) 753
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 3 cut(s) 309, 1157, 1421
BspQI GCTCTTC 1 cut(s) 1193
BspT107I GGYRCC 1 cut(s) 751
BspTI CTTAAG 1 cut(s) 853
BspTNI GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
BsrDI GCAATG 1 cut(s) 1491
BsrGI TGTACA 1 cut(s) 1209
BsrI ACTGG 5 cut(s) 149, 895, 1000, 1304, 1504
BssECI CCNNGG 4 cut(s) 636, 711, 1039, 1377
BssMI GATC 3 cut(s) 301, 1162, 1426
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 3 cut(s) 636, 711, 1039
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 1091, 1379
Bst4CI ACNGT 3 cut(s) 788, 940, 1053
Bst6I CTCTTC 2 cut(s) 788, 1193
BstAFI CTTAAG 1 cut(s) 853
BstAUI TGTACA 1 cut(s) 1209
BstC8I GCNNGC 2 cut(s) 1107, 1474
BstDEI CTNAG 3 cut(s) 511, 574, 981
BstF5I GGATG 3 cut(s) 376, 502, 964
BstFNI CGCG 1 cut(s) 1354
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 304, 1165, 1429
BstMBI GATC 3 cut(s) 301, 1162, 1426
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 2 cut(s) 1091, 1379
BstSCI CCNGG 2 cut(s) 1089, 1377
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 1 cut(s) 1354
BstV1I GCAGC 5 cut(s) 19, 56, 871, 1215, 1281
BstX2I RGATCY 1 cut(s) 1426
BstYI RGATCY 1 cut(s) 1426
BsuI GTATCC 2 cut(s) 1046, 1342
BsuRI GGCC 2 cut(s) 710, 1105
BtrI CACGTC 1 cut(s) 1207
BtsCI GGATG 3 cut(s) 376, 502, 964
BtsIMutI CAGTG 4 cut(s) 156, 793, 993, 1058
Cac8I GCNNGC 2 cut(s) 1107, 1474
CfoI GCGC 1 cut(s) 37
Csp6I GTAC 4 cut(s) 356, 365, 759, 1210
CviAII CATG 5 cut(s) 283, 407, 1174, 1345, 1447
CviQI GTAC 4 cut(s) 356, 365, 759, 1210
DdeI CTNAG 3 cut(s) 511, 574, 981
DpnI GATC 3 cut(s) 303, 1164, 1428
DpnII GATC 3 cut(s) 301, 1162, 1426
DriI GACNNNNNGTC 1 cut(s) 1362
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 2 cut(s) 788, 1193
Eam1105I GACNNNNNGTC 1 cut(s) 1362
EarI CTCTTC 2 cut(s) 788, 1193
Eco130I CCWWGG 3 cut(s) 636, 711, 1039
Eco31I GGTCTC 7 cut(s) 194, 330, 374, 437, 500, 563, 626
Eco32I GATATC 1 cut(s) 782
Eco57I CTGAAG 2 cut(s) 371, 1296
EcoRII CCWGG 2 cut(s) 1089, 1377
EcoRV GATATC 1 cut(s) 782
EcoT14I CCWWGG 3 cut(s) 636, 711, 1039
ErhI CCWWGG 3 cut(s) 636, 711, 1039
Esp3I CGTCTC 1 cut(s) 956
FaeI CATG 5 cut(s) 286, 410, 1177, 1348, 1450
FaqI GGGAC 1 cut(s) 949
FatI CATG 5 cut(s) 282, 406, 1173, 1344, 1446
Fnu4HI GCNGC 5 cut(s) 33, 45, 885, 1229, 1270
FokI GGATG 3 cut(s) 383, 509, 971
Fsp4HI GCNGC 5 cut(s) 33, 45, 885, 1229, 1270
FspBI CTAG 2 cut(s) 1418, 1536
GlaI GCGC 1 cut(s) 36
GluI GCNGC 5 cut(s) 33, 45, 885, 1229, 1270
HaeIII GGCC 2 cut(s) 710, 1105
HapII CCGG 1 cut(s) 1430
HhaI GCGC 1 cut(s) 37
Hin1II CATG 5 cut(s) 286, 410, 1177, 1348, 1450
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 4 cut(s) 85, 1131, 1251, 1297
HindII GTYRAC 4 cut(s) 85, 1131, 1251, 1297
HinfI GANTC 6 cut(s) 422, 485, 548, 611, 674, 1127
HpaI GTTAAC 1 cut(s) 1251
HpaII CCGG 1 cut(s) 1430
Hpy166II GTNNAC 6 cut(s) 85, 319, 1131, 1210, 1251, 1297
Hpy188I TCNGA 6 cut(s) 144, 779, 1137, 1242, 1321, 1510
Hpy188III TCNNGA 5 cut(s) 555, 1015, 1166, 1418, 1430
Hpy8I GTNNAC 6 cut(s) 85, 319, 1131, 1210, 1251, 1297
Hpy99I CGWCG 1 cut(s) 1208
HpyCH4III ACNGT 3 cut(s) 788, 940, 1053
HpyCH4IV ACGT 2 cut(s) 1206, 1253
HpyCH4V TGCA 7 cut(s) 282, 374, 765, 821, 872, 1336, 1476
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 511, 574, 981
HpySE526I ACGT 2 cut(s) 1206, 1253
Hsp92II CATG 5 cut(s) 286, 410, 1177, 1348, 1450
HspAI GCGC 1 cut(s) 35
Kpn2I TCCGGA 1 cut(s) 1429
KspAI GTTAAC 1 cut(s) 1251
Kzo9I GATC 3 cut(s) 301, 1162, 1426
LguI GCTCTTC 1 cut(s) 1193
LmnI GCTCC 1 cut(s) 41
Lsp1109I GCAGC 5 cut(s) 19, 56, 871, 1215, 1281
LweI GCATC 2 cut(s) 361, 898
MaeI CTAG 2 cut(s) 1418, 1536
MaeII ACGT 2 cut(s) 1206, 1253
MalI GATC 3 cut(s) 303, 1164, 1428
MboI GATC 3 cut(s) 301, 1162, 1426
MboII GAAGA 5 cut(s) 212, 805, 837, 908, 1210
MflI RGATCY 1 cut(s) 1426
MlsI TGGCCA 1 cut(s) 710
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 1 cut(s) 1136
MmeI TCCRAC 1 cut(s) 1281
MnlI CCTC 9 cut(s) 20, 119, 223, 226, 791, 920, 1384, 1456, 1537
Mox20I TGGCCA 1 cut(s) 710
MroI TCCGGA 1 cut(s) 1429
MscI TGGCCA 1 cut(s) 710
MseI TTAA 6 cut(s) 720, 741, 854, 878, 1250, 1515
MslI CAYNNNNRTG 1 cut(s) 998
Msp20I TGGCCA 1 cut(s) 710
MspCI CTTAAG 1 cut(s) 853
MspI CCGG 1 cut(s) 1430
MspR9I CCNGG 2 cut(s) 1091, 1379
Mva1269I GAATGC 1 cut(s) 1476
MvaI CCWGG 2 cut(s) 1091, 1379
MvnI CGCG 1 cut(s) 1354
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 3 cut(s) 301, 1162, 1426
NlaIII CATG 5 cut(s) 286, 410, 1177, 1348, 1450
NlaIV GGNNCC 1 cut(s) 753
PciSI GCTCTTC 1 cut(s) 1193
PctI GAATGC 1 cut(s) 1476
PfeI GAWTC 5 cut(s) 422, 485, 548, 611, 674
PkrI GCNGC 5 cut(s) 34, 46, 886, 1230, 1271
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
PsiI TTATAA 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 1089, 1377
PspGI CCWGG 2 cut(s) 1089, 1377
PspN4I GGNNCC 1 cut(s) 753
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 1426
RsaI GTAC 4 cut(s) 357, 366, 760, 1211
RsaNI GTAC 4 cut(s) 356, 365, 759, 1210
RseI CAYNNNNRTG 1 cut(s) 998
SapI GCTCTTC 1 cut(s) 1193
SaqAI TTAA 6 cut(s) 720, 741, 854, 878, 1250, 1515
SatI GCNGC 5 cut(s) 33, 45, 885, 1229, 1270
Sau3AI GATC 3 cut(s) 301, 1162, 1426
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 2 cut(s) 1091, 1379
SfaNI GCATC 2 cut(s) 361, 898
SfcI CTRYAG 1 cut(s) 819
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 3 cut(s) 113, 853, 1078
SmoI CTYRAG 3 cut(s) 113, 853, 1078
SsiI CCGC 3 cut(s) 250, 678, 1354
SspMI CTAG 2 cut(s) 1418, 1536
StyD4I CCNGG 2 cut(s) 1089, 1377
StyI CCWWGG 3 cut(s) 636, 711, 1039
TaaI ACNGT 3 cut(s) 788, 940, 1053
TaiI ACGT 2 cut(s) 1209, 1256
TaqI TCGA 2 cut(s) 420, 832
TatI WGTACW 2 cut(s) 758, 1209
TfiI GAWTC 5 cut(s) 422, 485, 548, 611, 674
Tru1I TTAA 6 cut(s) 720, 741, 854, 878, 1250, 1515
Tru9I TTAA 6 cut(s) 720, 741, 854, 878, 1250, 1515
TscAI CASTG 4 cut(s) 156, 793, 1000, 1058
TseI GCWGC 5 cut(s) 32, 44, 884, 1228, 1269
TspDTI ATGAA 6 cut(s) 90, 213, 299, 1338, 1463, 1502
TspGWI ACGGA 2 cut(s) 314, 854
TspRI CASTG 4 cut(s) 156, 793, 1000, 1058
Vha464I CTTAAG 1 cut(s) 853
XapI RAATTY 4 cut(s) 125, 773, 895, 1236
XbaI TCTAGA 1 cut(s) 1417
XspI CTAG 2 cut(s) 1418, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.