Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001931

Physical Location & Seq

Genomic Coordinates Forward (+)

14319086 .. 14319820

Gene Structure 735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTTATAGTAGGGGAGTTTGTAGGGGGTGCAGCTCTTGGTGCAGCATTTGGGTTGTTGTTTGATGTTGTGAAGAAAGCAGTTGACAAGCCTAGTACCTTTAGATCCCTCTTTGAGAACATTAAATTTTCGCTTAAGTTTTTAAAACCAATGATCGAAAAGATAGGAGAACATAACGTGGAATTGGGTCTCCCAGATGAAGAAATCAAGTATATTATAAGAGAAATGGAGGAGGGCGTAAAGCTTGTCCAGAAGTCATCAAAGATCAGTAAGTGGAACTGCATGAAGTTTTATTACACGGATCAACTTATTGAACTAGATGGGTCTCTTAAAAGACTGTTAGATATATTGATAGTGCAAGGATTAAGAGATGGGAAGGAGACCTTGATTTTGGCAAGAAAACACCAAGACCAACTTATTGAATCGGCAAGAGATGCAAAGGAGACCTTGGTTTTGGCACAAAAGAACAATGACCAGCTTATTGAATCAGCGAAGGATGGGAAAGAGACCTTAGTTCTGGCAAGACAAAATGCGGACCAACTTATTGATTCGTCAAGAGATGGGAAGGAGACCTTGGATTTGGCAAGACAAAACAATGCCCAGCTTATTGAATCAGCAAGGGATGGAAAGGAGACCCTGGTTTTGGCCAAGAACATTAAAAGGTTTCTCAAACGAATTGAATGTTTGGTGCGTTGTACTTATAAAGGTGATTTCAAAGTCCAGTCCAACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

244

Amino Acids

27.63

Weight (kDa)

8.6

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	6 - 136	4.1e-27	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001931)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15270 FvH4_1g15350 FvH4_1g15430
rosa_chinensis	RchiOBHm_Chr2g0104571 RchiOBHm_Chr2g0104621 RchiOBHm_Chr2g0104631 RchiOBHm_Chr2g0104641
rosa_laevigata	RLG00000017191 RLG00000017336 RLG00000017337 RLG00000017338
rosa_multiflora	Rmu_sc0002316.1_g000034 Rmu_sc0002316.1_g000036 Rmu_sc0002316.1_g000045 Rmu_sc0002316.1_g000046
rosa_roxburghii	Rroxscaffold_2G00138880 Rroxscaffold_2G00138890 Rroxscaffold_2G00138930 Rroxscaffold_2G00138940
rosa_rugosa	Rorug02G0121000 Rorug02G0121100 Rorug02G0121200 Rorug02G0121300 Rorug02G0121300 Rorug02G0121400 Rorug02G0121500 Rorug02G0121600 Rorug02G0121600 Rorug02G0121700
rosa_samantha	Rh2AG171400 Rh2AG171700 Rh2AG171800 Rh2BG178700 Rh2BG178800 Rh2BG179100 Rh2BG179200 Rh2BG179300 Rh2CG176300 Rh2CG176600 Rh2DG177400 Rh2DG177500 Rh2DG178000 Rh2DG178100
rosa_wichuraiana	Rw2G013400 Rw2G013420 Rw2G013440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	218, 702
AciI	CCGC	1 cut(s)	533
AclWI	GGATC	2 cut(s)	99, 309
AcoI	YGGCCR	1 cut(s)	645
AcsI	RAATTY	1 cut(s)	125
AfaI	GTAC	2 cut(s)	97, 697
AfiI	CCNNNNNNNGG	1 cut(s)	643
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	6 cut(s)	314, 422, 485, 611, 680, 715
AjnI	CCWGG	1 cut(s)	636
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	4 cut(s)	35, 244, 478, 604
AluI	AGCT	4 cut(s)	35, 244, 478, 604
Alw26I	GTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
AlwI	GGATC	2 cut(s)	99, 309
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	2 cut(s)	32, 44
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	8 cut(s)	373, 405, 436, 468, 562, 594, 625, 657
AspS9I	GGNCC	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	535
BalI	TGGCCA	1 cut(s)	647
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbvI	GCAGC	2 cut(s)	44, 56
BccI	CCATC	5 cut(s)	314, 365, 491, 554, 617
BciT130I	CCWGG	1 cut(s)	638
BcoDI	GTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BfaI	CTAG	3 cut(s)	93, 317, 733
BfrI	CTTAAG	1 cut(s)	134
BisI	GCNGC	2 cut(s)	33, 45
BlsI	GCNGC	2 cut(s)	34, 46
Bme1390I	CCNGG	1 cut(s)	638
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	638
BmsI	GCATC	1 cut(s)	424
BsaI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsaJI	CCNNGG	3 cut(s)	447, 573, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse1I	ACTGG	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	3 cut(s)	447, 573, 636
BseGI	GGATG	2 cut(s)	502, 628
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseNI	ACTGG	1 cut(s)	721
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	44, 56
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	2 cut(s)	51, 63
BshFI	GGCC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsnI	GGCC	1 cut(s)	647
Bso31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
Bsp143I	GATC	4 cut(s)	104, 153, 264, 301
BspACI	CCGC	1 cut(s)	533
BspANI	GGCC	1 cut(s)	647
BspPI	GGATC	2 cut(s)	99, 309
BspTI	CTTAAG	1 cut(s)	134
BspTNI	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BsrI	ACTGG	1 cut(s)	721
BssECI	CCNNGG	3 cut(s)	447, 573, 636
BssMI	GATC	4 cut(s)	104, 153, 264, 301
BssT1I	CCWWGG	2 cut(s)	447, 573
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	502, 628
BstKTI	GATC	4 cut(s)	107, 156, 267, 304
BstMAI	GTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
BstMBI	GATC	4 cut(s)	104, 153, 264, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 434
BstNI	CCWGG	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	44, 56
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	647
BtsCI	GGATG	2 cut(s)	502, 628
Cfr13I	GGNCC	1 cut(s)	535
Csp6I	GTAC	2 cut(s)	96, 696
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	6 cut(s)	35, 91, 244, 478, 604, 647
CviKI_1	RGCY	6 cut(s)	35, 91, 244, 478, 604, 647
CviQI	GTAC	2 cut(s)	96, 696
DdeI	CTNAG	1 cut(s)	511
DpnI	GATC	4 cut(s)	106, 155, 266, 303
DpnII	GATC	4 cut(s)	104, 153, 264, 301
DraI	TTTAAA	1 cut(s)	144
EaeI	YGGCCR	1 cut(s)	645
Eco130I	CCWWGG	2 cut(s)	447, 573
Eco31I	GGTCTC	7 cut(s)	194, 330, 374, 437, 500, 563, 626
Eco47I	GGWCC	1 cut(s)	535
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	2 cut(s)	447, 573
ErhI	CCWWGG	2 cut(s)	447, 573
FaeI	CATG	1 cut(s)	286
FaiI	YATR	7 cut(s)	8, 174, 213, 218, 284, 347, 702
FalI	AAGNNNNNCTT	8 cut(s)	368, 400, 399, 431, 431, 463, 557, 589
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	33, 45
FokI	GGATG	2 cut(s)	509, 635
Fsp4HI	GCNGC	2 cut(s)	33, 45
FspBI	CTAG	3 cut(s)	93, 317, 733
GluI	GCNGC	2 cut(s)	33, 45
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	1 cut(s)	647
Hin1II	CATG	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	422, 485, 548, 611
HphI	GGTGA	1 cut(s)	719
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	2 cut(s)	250, 555
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	370, 487, 559
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	5 cut(s)	32, 44, 282, 358, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 434
HpyF3I	CTNAG	1 cut(s)	511
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	104, 153, 264, 301
LpnPI	CCDG	7 cut(s)	207, 263, 488, 503, 614, 623, 650
Lsp1109I	GCAGC	2 cut(s)	44, 56
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	93, 317, 733
MaeII	ACGT	1 cut(s)	177
MalI	GATC	4 cut(s)	106, 155, 266, 303
MboI	GATC	4 cut(s)	104, 153, 264, 301
MboII	GAAGA	2 cut(s)	85, 212
MflI	RGATCY	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	3 cut(s)	125, 182, 675
MluNI	TGGCCA	1 cut(s)	647
MnlI	CCTC	3 cut(s)	119, 223, 226
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	6 cut(s)	123, 135, 143, 330, 365, 657
Msp20I	TGGCCA	1 cut(s)	647
MspCI	CTTAAG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	638
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	2 cut(s)	41, 434
NdeII	GATC	4 cut(s)	104, 153, 264, 301
NlaIII	CATG	1 cut(s)	286
PfeI	GAWTC	4 cut(s)	422, 485, 548, 611
PkrI	GCNGC	2 cut(s)	34, 46
PsiI	TTATAA	2 cut(s)	218, 702
Psp6I	CCWGG	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	636
PspPI	GGNCC	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	2 cut(s)	97, 697
RsaNI	GTAC	2 cut(s)	96, 696
SaqAI	TTAA	6 cut(s)	123, 135, 143, 330, 365, 657
SatI	GCNGC	2 cut(s)	33, 45
Sau3AI	GATC	4 cut(s)	104, 153, 264, 301
Sau96I	GGNCC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	638
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	3 cut(s)	125, 182, 675
SsiI	CCGC	1 cut(s)	533
SspMI	CTAG	3 cut(s)	93, 317, 733
StyD4I	CCNGG	1 cut(s)	636
StyI	CCWWGG	2 cut(s)	447, 573
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	125, 182, 675
TatI	WGTACW	1 cut(s)	695
TfiI	GAWTC	4 cut(s)	422, 485, 548, 611
Tru1I	TTAA	6 cut(s)	123, 135, 143, 330, 365, 657
Tru9I	TTAA	6 cut(s)	123, 135, 143, 330, 365, 657
TseI	GCWGC	2 cut(s)	32, 44
TspDTI	ATGAA	2 cut(s)	213, 299
TspGWI	ACGGA	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	1 cut(s)	125
XspI	CTAG	3 cut(s)	93, 317, 733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.