Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0010640

Physical Location & Seq

Genomic Coordinates Reverse (-)

15651288 .. 15655734

Gene Structure 4447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGAATATGCTTCTGGAGGAGAGCTTTTCGAGCGGATATGCAATGCAGGGCGCTTTAGTGAGGACGAGGCTCGCTTCTTTTTCCAACAACTTATATCTGGAGTCAGTTACTGTCATGCAATGCAAGTATGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGTCCAGCTCCTCGCTTAAAGATATGTGATTTTGGGTACTCAAAGTCTTCAGTGCTTCATTCACAACCAAAATCTACAGTAGGAACTCCGGCATACATTGCTCCCGAAGTATTACTGAGGCAAGAGTATGATGGAAAGACGGCAGATGTATGGTCATGTGGAGTAACTTTATATGTGATGTTGATGGGATCATATCCTTTTGAAGATCCTGATGAACCAAAGGATTTCCGGAAGACGATACAAAGAATTCTCAGTGTCCAGTATGCCATTCCAGATTCTGTGCCATTATCTCGTGAATGTCTTGAACTGATATCAAGAATTTTTGTGCCAGACCCTGCTGCGAGAATTACCATTCCTGAAATAAAGAACCACCCATGGTTCTTGAAGAATCTTCCCGCAGATTTGATGGATGAGATGACGATGGGCAACCATTTCGAAGAGCCTGATCAACCGATGCAGAGCATTGATACAATCATGCAAATAATTGCTGAGGCCACTATACCAGCAGTTGGAATCCACAATCTTAGCCCGTACCTGAATGACAATTTTGACATGGACGATGATATGGATGACTTAGATTCGGAATCTGAACTAGATGTTGATAGCAGTGGGGAAATAGTCTATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

267

Amino Acids

30.1

Weight (kDa)

4.37

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 184	4.3e-52	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 180	8.3e-18	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0010640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50500 AT3G50500 AT5G66880 AT5G66880
fragaria_vesca	FvH4_1g15440 FvH4_1g15440 FvH4_1g15440 FvH4_1g15440
malus_domestica	MD02G1166500.v1.1 MD15G1279000.v1.1
prunus_persica	Prupe.7G138200_v2.0.a1 Prupe.7G138200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104671
rosa_laevigata	RLG00000017350
rosa_multiflora	Rmu_sc0002316.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138850
rosa_rugosa	Rorug02G0121700
rosa_samantha	Rh2BG179500 Rh2DG178300
rosa_wichuraiana	Rw2G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	680
AccBSI	CCGCTC	1 cut(s)	34
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	2 cut(s)	34, 567
AclWI	GGATC	2 cut(s)	367, 371
AcsI	RAATTY	2 cut(s)	417, 489
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	2 cut(s)	209, 704
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	4 cut(s)	145, 374, 476, 556
AluBI	AGCT	2 cut(s)	25, 179
AluI	AGCT	2 cut(s)	25, 179
AlwI	GGATC	2 cut(s)	367, 371
AlwNI	CAGNNNCTG	3 cut(s)	111, 449, 506
Aor13HI	TCCGGA	1 cut(s)	399
AoxI	GGCC	1 cut(s)	663
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	2 cut(s)	417, 489
AspLEI	GCGC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	125
AsuII	TTCGAA	1 cut(s)	606
BauI	CACGAG	1 cut(s)	462
BbsI	GAAGAC	2 cut(s)	210, 410
BbvCI	CCTCAGC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	5 cut(s)	161, 296, 349, 571, 586
BceAI	ACGGC	1 cut(s)	327
BcgI	CGANNNNNNTGC	2 cut(s)	586, 620
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	55
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	615
BpiI	GAAGAC	2 cut(s)	210, 410
BpmI	CTGGAG	2 cut(s)	36, 120
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu14I	TTCGAA	1 cut(s)	606
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	545
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	3 cut(s)	49, 126, 267
BseAI	TCCGGA	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	3 cut(s)	172, 586, 745
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	3 cut(s)	49, 126, 267
BseMII	CTCAG	3 cut(s)	278, 436, 651
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	2 cut(s)	33, 171
BseXI	GCAGC	1 cut(s)	496
BshFI	GGCC	1 cut(s)	665
BsiSI	CCGG	3 cut(s)	136, 260, 400
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	665
Bsp119I	TTCGAA	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	359, 376, 616
Bsp19I	CCATGG	1 cut(s)	545
BspACI	CCGC	2 cut(s)	34, 567
BspANI	GGCC	1 cut(s)	665
BspCNI	CTCAG	3 cut(s)	279, 435, 652
BspEI	TCCGGA	1 cut(s)	399
BspPI	GGATC	2 cut(s)	367, 371
BspQI	GCTCTTC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	606
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	3 cut(s)	49, 126, 267
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	3 cut(s)	359, 376, 616
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	113, 250
Bst6I	CTCTTC	1 cut(s)	603
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstBI	TTCGAA	1 cut(s)	606
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	5 cut(s)	287, 422, 660, 695, 745
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	3 cut(s)	172, 586, 745
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	3 cut(s)	362, 379, 619
BstMBI	GATC	3 cut(s)	359, 376, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 269
BstSCI	CCNGG	1 cut(s)	135
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	496
BstV2I	GAAGAC	2 cut(s)	210, 410
BstX2I	RGATCY	1 cut(s)	376
BstYI	RGATCY	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	665
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	3 cut(s)	172, 586, 745
BtsI	GCAGTG	1 cut(s)	784
BtsIMutI	CAGTG	3 cut(s)	228, 430, 784
Cac8I	GCNNGC	1 cut(s)	73
CaiI	CAGNNNCTG	3 cut(s)	111, 449, 506
CfoI	GCGC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	208, 703
CviAII	CATG	5 cut(s)	116, 327, 546, 646, 724
CviJI	RGCY	6 cut(s)	25, 71, 179, 613, 665, 699
CviKI_1	RGCY	6 cut(s)	25, 71, 179, 613, 665, 699
CviQI	GTAC	2 cut(s)	208, 703
DdeI	CTNAG	5 cut(s)	287, 422, 660, 695, 745
DpnI	GATC	3 cut(s)	361, 378, 618
DpnII	GATC	3 cut(s)	359, 376, 616
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	417
EcoRV	GATATC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	5 cut(s)	119, 330, 549, 649, 727
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	5 cut(s)	115, 326, 545, 645, 723
FauI	CCCGC	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	3 cut(s)	179, 593, 752
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	2 cut(s)	36, 120
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	665
HapII	CCGG	3 cut(s)	136, 260, 400
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	5 cut(s)	119, 330, 549, 649, 727
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	6 cut(s)	102, 446, 559, 684, 749, 755
HpaII	CCGG	3 cut(s)	136, 260, 400
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	2 cut(s)	754, 760
HpyCH4III	ACNGT	2 cut(s)	113, 250
HpyCH4V	TGCA	6 cut(s)	42, 47, 119, 124, 628, 649
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 269
HpyF3I	CTNAG	5 cut(s)	287, 422, 660, 695, 745
Hsp92II	CATG	5 cut(s)	119, 330, 549, 649, 727
HspAI	GCGC	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	359, 376, 616
LguI	GCTCTTC	1 cut(s)	603
LmnI	GCTCC	2 cut(s)	184, 277
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	1 cut(s)	764
MaeIII	GTNAC	3 cut(s)	107, 131, 334
MalI	GATC	3 cut(s)	361, 378, 618
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	3 cut(s)	359, 376, 616
MboII	GAAGA	6 cut(s)	210, 386, 415, 554, 568, 620
MflI	RGATCY	1 cut(s)	376
MluCI	AATT	5 cut(s)	417, 489, 516, 654, 715
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	4 cut(s)	109, 129, 144, 661
MnlI	CCTC	6 cut(s)	11, 55, 61, 192, 282, 655
MroI	TCCGGA	1 cut(s)	399
MseI	TTAA	2 cut(s)	188, 802
MspI	CCGG	3 cut(s)	136, 260, 400
MspR9I	CCNGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	31, 269
NciI	CCSGG	1 cut(s)	137
NcoI	CCATGG	1 cut(s)	545
NdeII	GATC	3 cut(s)	359, 376, 616
NlaIII	CATG	5 cut(s)	119, 330, 549, 649, 727
NmuCI	GTSAC	1 cut(s)	131
NspV	TTCGAA	1 cut(s)	606
PciSI	GCTCTTC	1 cut(s)	603
PfeI	GAWTC	5 cut(s)	446, 559, 684, 749, 755
PflMI	CCANNNNNTGG	1 cut(s)	680
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PstNI	CAGNNNCTG	3 cut(s)	111, 449, 506
PsuI	RGATCY	1 cut(s)	376
RsaI	GTAC	2 cut(s)	209, 704
RsaNI	GTAC	2 cut(s)	208, 703
SapI	GCTCTTC	1 cut(s)	603
SaqAI	TTAA	2 cut(s)	188, 802
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	3 cut(s)	359, 376, 616
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	3 cut(s)	27, 181, 708
SfaNI	GCATC	1 cut(s)	615
SfcI	CTRYAG	1 cut(s)	246
SfuI	TTCGAA	1 cut(s)	606
Sse9I	AATT	5 cut(s)	417, 489, 516, 654, 715
SsiI	CCGC	2 cut(s)	34, 567
SspMI	CTAG	1 cut(s)	764
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	2 cut(s)	113, 250
TaqI	TCGA	2 cut(s)	30, 606
TasI	AATT	5 cut(s)	417, 489, 516, 654, 715
TfiI	GAWTC	5 cut(s)	446, 559, 684, 749, 755
Tru1I	TTAA	2 cut(s)	188, 802
Tru9I	TTAA	2 cut(s)	188, 802
TscAI	CASTG	3 cut(s)	228, 430, 784
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	218, 399
TspRI	CASTG	3 cut(s)	228, 430, 784
Van91I	CCANNNNNTGG	1 cut(s)	680
XapI	RAATTY	2 cut(s)	417, 489
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.