Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010640

Physical Location & Seq

Genomic Coordinates Forward (+)

26710302 .. 26712971

Gene Structure 2670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATCGAGCTCCGGTGACCACAGGACCGTTGGATATGCCGATTATGCACGACAGTGATCGATATGACTTCGTTAAGGATATTGGTTCTGGTAATTTCGGTGTTGCTCGTCTTATGAGAGATAAACTCACTAAAGAGCTTGTTGCTGTCAAGTACATCGAGAGAGGAGACAAGATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGGTCATTTTGACGCCGACTCATCTGGCTATCATAATGGAATATGCTTCTGGCGGTGAACTTTACGAGCGGATTTGCAATGCAGGACGGTTTAGTGAAGATGAGGCTCGGTTCTTCTTTCAGCAGCTTCTATCTGGAGTCAGTTATTGTCATTCGATGCAAATTTGCCATCGTGACCTGAAGCTAGAGAATACATTGTTGGATGGAAGTCCTGCTCCTCGATTAAAAATTTGTGATTTTGGATATTCAAAGTCTTCTGTTCTTCATTCACAACCAAAGTCAACTGTTGGTACTCCTGCATACATCGCTCCAGAGGTACTGCTTCGTCAGGAATATGATGGCAAGATTGCAGATGTATGGTCATGTGGTGTGACCTTATACGTCATGTTGGTTGGAGCGTATCCGTTCGAAGATCCAGAAGAGCCAAGAGACTATCGGAAAACAATACAGAGAATCCTTAGCGTTAAATACTCAATCCCTGATGACATACGGATATCACCTGAATGCTGTCATCTTATTTCAAGAATCTTCGTGGCTGATCCCGCTACCAGAATAAGCATACCAGAGATCAAAACCCATAGTTGGTTCTTGAAGAATCTCCCTGCTGATCTAATGAACGAGAGCAACACAGGAAGCCAGTTCCAGGAGCCTGAACAACCAATGCAAAGCCTTGACACAATCATGCAAATCATCTCTGAAGCCACAATTCCCGCTGTTCGAAACCGTTGCCTAGACGATTTCATGACTGACAATCTTGATCTTGACGATGACATGGATGACTTTGACTCTGAATCTGAAATCGACATTGACAGTAGCGGAGAGATAGTTTACGCTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

361

Amino Acids

41.08

Weight (kDa)

4.81

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	22 - 278	3.7e-71	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 273	3.1e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50500 AT3G50500 AT5G66880 AT5G66880
fragaria_vesca	FvH4_1g15440 FvH4_1g15440 FvH4_1g15440 FvH4_1g15440
malus_domestica	MD02G1166500.v1.1 MD15G1279000.v1.1
prunus_persica	Prupe.7G138200_v2.0.a1 Prupe.7G138200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104671
rosa_laevigata	RLG00000017350
rosa_multiflora	Rmu_sc0002316.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138850
rosa_rugosa	Rorug02G0121700
rosa_samantha	Rh2BG179500 Rh2DG178300
rosa_wichuraiana	Rw2G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	316
AciI	CCGC	5 cut(s)	300, 316, 789, 957, 1062
AclWI	GGATC	3 cut(s)	12, 653, 779
AcsI	RAATTY	2 cut(s)	408, 474
AcuI	CTGAAG	2 cut(s)	446, 963
AcyI	GRCGYC	1 cut(s)	260
AfaI	GTAC	3 cut(s)	155, 538, 564
AfiI	CCNNNNNNNGG	2 cut(s)	828, 889
AgsI	TTSAA	4 cut(s)	191, 495, 768, 838
AjnI	CCWGG	1 cut(s)	888
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AleI	CACNNNNGTG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	11, 139, 373, 430
AluI	AGCT	4 cut(s)	11, 139, 373, 430
Alw21I	GWGCWC	1 cut(s)	13
Alw26I	GTCTC	2 cut(s)	162, 669
AlwI	GGATC	3 cut(s)	12, 653, 779
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	2 cut(s)	408, 474
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	3 cut(s)	28, 314, 735
AsuII	TTCGAA	2 cut(s)	654, 964
AvaII	GGWCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	423, 443, 578
BcgI	CGANNNNNNTGC	2 cut(s)	954, 988
BciT130I	CCWGG	1 cut(s)	890
BciVI	GTATCC	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	162, 669
BfaI	CTAG	2 cut(s)	431, 977
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	890
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	894
BmrFI	CCNGG	1 cut(s)	890
BmsI	GCATC	2 cut(s)	232, 393
BpiI	GAAGAC	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpmI	CTGGAG	2 cut(s)	402, 540
Bpu10I	CCTNAGC	1 cut(s)	704
Bpu14I	TTCGAA	2 cut(s)	654, 964
Bsa29I	ATCGAT	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	1056, 1086
Bsc4I	CCNNNNNNNGG	2 cut(s)	828, 889
Bse1I	ACTGG	1 cut(s)	883
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	890
BseCI	ATCGAT	1 cut(s)	61
BseGI	GGATG	3 cut(s)	223, 454, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	828, 889
BseMI	GCAATG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	2 cut(s)	180, 453
BseXI	GCAGC	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	828, 889
BsmAI	GTCTC	2 cut(s)	162, 669
BsmI	GAATGC	1 cut(s)	755
Bsp119I	TTCGAA	2 cut(s)	654, 964
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
BspACI	CCGC	5 cut(s)	300, 316, 789, 957, 1062
BspDI	ATCGAT	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	987
BspLI	GGNNCC	1 cut(s)	894
BspPI	GGATC	3 cut(s)	12, 653, 779
BspQI	GCTCTTC	1 cut(s)	660
BspT104I	TTCGAA	2 cut(s)	654, 964
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	883
BssMI	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
BssNI	GRCGYC	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	890
Bst4CI	ACNGT	6 cut(s)	30, 56, 336, 532, 971, 1058
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	1 cut(s)	260
BstBI	TTCGAA	2 cut(s)	654, 964
BstDEI	CTNAG	2 cut(s)	218, 704
BstEII	GGTNACC	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	223, 454, 1027
BstKTI	GATC	8 cut(s)	7, 61, 201, 661, 787, 816, 856, 1006
BstMAI	GTCTC	2 cut(s)	162, 669
BstMBI	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 551, 788
BstNI	CCWGG	1 cut(s)	890
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	888
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
Bsu15I	ATCGAT	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	657
BsuTUI	ATCGAT	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	535
BtsCI	GGATG	3 cut(s)	223, 454, 1027
BtsIMutI	CAGTG	1 cut(s)	61
CciI	TCATGA	1 cut(s)	987
Cfr13I	GGNCC	1 cut(s)	26
ClaI	ATCGAT	1 cut(s)	61
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	154, 537, 563
CviAII	CATG	5 cut(s)	609, 631, 928, 988, 1018
CviQI	GTAC	3 cut(s)	154, 537, 563
DdeI	CTNAG	2 cut(s)	218, 704
DpnI	GATC	8 cut(s)	6, 60, 200, 660, 786, 815, 855, 1005
DpnII	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	13
Eco32I	GATATC	1 cut(s)	741
Eco47I	GGWCC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	446, 963
Eco91I	GGTNACC	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	11
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	888
EcoRV	GATATC	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	5 cut(s)	612, 634, 931, 991, 1021
FatI	CATG	5 cut(s)	608, 630, 927, 987, 1017
FauI	CCCGC	2 cut(s)	796, 964
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	3 cut(s)	210, 461, 1034
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	2 cut(s)	431, 977
GluI	GCNGC	1 cut(s)	371
GsuI	CTGGAG	2 cut(s)	402, 540
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	5 cut(s)	612, 634, 931, 991, 1021
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	7 cut(s)	265, 384, 699, 771, 841, 1031, 1037
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	3 cut(s)	28, 314, 735
Hpy166II	GTNNAC	3 cut(s)	305, 528, 1075
Hpy188I	TCNGA	5 cut(s)	239, 684, 943, 1036, 1042
Hpy8I	GTNNAC	3 cut(s)	305, 528, 1075
HpyCH4III	ACNGT	6 cut(s)	30, 56, 336, 532, 971, 1058
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	8 cut(s)	49, 324, 329, 406, 545, 596, 910, 931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 551, 788
HpyF3I	CTNAG	2 cut(s)	218, 704
HpySE526I	ACGT	1 cut(s)	627
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	5 cut(s)	612, 634, 931, 991, 1021
Kzo9I	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	5 cut(s)	16, 466, 559, 641, 892
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	232, 393
MaeI	CTAG	2 cut(s)	431, 977
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	4 cut(s)	16, 213, 419, 616
MalI	GATC	8 cut(s)	6, 60, 200, 660, 786, 815, 855, 1005
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
MboII	GAAGA	8 cut(s)	352, 356, 492, 500, 668, 677, 766, 850
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	4 cut(s)	94, 408, 474, 951
MlyI	GAGTC	3 cut(s)	259, 393, 1025
MmeI	TCCRAC	3 cut(s)	12, 426, 619
MnlI	CCTC	5 cut(s)	158, 241, 343, 474, 553
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	5 cut(s)	75, 204, 243, 470, 711
MslI	CAYNNNNRTG	3 cut(s)	54, 748, 926
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	890
Mva1269I	GAATGC	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	890
MwoI	GCNNNNNNNGC	3 cut(s)	46, 551, 788
NdeII	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
NlaIII	CATG	5 cut(s)	612, 634, 931, 991, 1021
NlaIV	GGNNCC	1 cut(s)	894
NmuCI	GTSAC	4 cut(s)	16, 213, 419, 616
NspV	TTCGAA	2 cut(s)	654, 964
OliI	CACNNNNGTG	1 cut(s)	54
PagI	TCATGA	1 cut(s)	987
PciSI	GCTCTTC	1 cut(s)	660
PctI	GAATGC	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	4 cut(s)	699, 771, 841, 1037
PfoI	TCCNGGA	1 cut(s)	888
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	3 cut(s)	259, 392, 1025
PpsI	GAGTC	3 cut(s)	259, 392, 1025
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	888
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	888
PspN4I	GGNNCC	1 cut(s)	894
PspPI	GGNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	3 cut(s)	155, 538, 564
RsaNI	GTAC	3 cut(s)	154, 537, 563
RseI	CAYNNNNRTG	3 cut(s)	54, 748, 926
SacI	GAGCTC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	5 cut(s)	75, 204, 243, 470, 711
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	8 cut(s)	4, 58, 198, 658, 784, 813, 853, 1003
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	3 cut(s)	259, 393, 1025
ScrFI	CCNGG	1 cut(s)	890
SduI	GDGCHC	1 cut(s)	13
SfaNI	GCATC	2 cut(s)	232, 393
SfuI	TTCGAA	2 cut(s)	654, 964
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	3 cut(s)	54, 748, 926
Sse9I	AATT	4 cut(s)	94, 408, 474, 951
SsiI	CCGC	5 cut(s)	300, 316, 789, 957, 1062
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	431, 977
SstI	GAGCTC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	888
TaaI	ACNGT	6 cut(s)	30, 56, 336, 532, 971, 1058
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	8 cut(s)	7, 61, 159, 401, 466, 654, 964, 1047
TasI	AATT	4 cut(s)	94, 408, 474, 951
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	4 cut(s)	699, 771, 841, 1037
Tru1I	TTAA	5 cut(s)	75, 204, 243, 470, 711
Tru9I	TTAA	5 cut(s)	75, 204, 243, 470, 711
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	4 cut(s)	16, 213, 419, 616
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	4 cut(s)	16, 213, 419, 616
TspDTI	ATGAA	4 cut(s)	195, 500, 875, 976
TspGWI	ACGGA	2 cut(s)	639, 751
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	2 cut(s)	408, 474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	2 cut(s)	431, 977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.