Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010640

Physical Location & Seq

Genomic Coordinates Forward (+)

77049114 .. 77059053

Gene Structure 9940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGATCGGGCGGCGGTGACGGTGGGGCCGGCGATGGACATGCCGATCATGCACGACAGTGATAGGTACGATTTCGTGAGGGATATCGGGTCCGGGAACTTCGGGGTGGCGAGGCTGATGACGGACAAGCAGACCAAGGAGCTCGTTGCCGTCAAGTATATCGAGCGCGGCAACAAGATTGATGAAAATGTTCAGAGAGAAATAATCAATCATAGGTCGTTGAGGCACCCCAATATTGTTAGGTTCAAAGAGGTTATTCTGACTCCTACCCATCTGGCGATTGTAATGGAATATGCTTCGGGAGGAGAGCTTTTCGAGCGGATATGCAATGCAGGGCGCTTCAGTGAGGACGAGGCTCGCTTCTTTTTCCAACAACTTATATCTGGAGTCAGTTACTGTCATGCAATGCAAGTATGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGTCCAGCTCCTCGCTTAAAGATATGTGATTTTGGGTACTCAAAGTCTTCAGTGCTTCATTCACAACCAAAATCTACAGTGGGAACTCCTGCATACATTGCTCCAGAAGTATTACTGAGGCAAGAGTATGATGGAAAGACTGCAGATGTATGGTCATGTGGGGTAACTTTATATGTGATGTTGATGGGATCATATCCTTTTGAGGATCCCGATGAACCAAAGGATTTCCGGAAGACTATACAAAGAATTCTCAGTGTCCAGTATGCCATTCCAGATTCTGTGCCATTATCTCGTGAATGTCTTGAATTGATATCAAGAATTTTCGTCCCAGACCCTGCTGCGAGAATTACCATTCCTGAAATAAAGAACCACCCATGGTTCTTGAAGAATCTCCCCGCAGATCTGATGGATGAGATGACGATGGGCAACCATTTCGAAGAGCCTGATCAACCGATGCAGAGCATTGATACAATCATGCAAATAATTGCTGAGGCCACTATACCAGCAGTTGGAATCCACAATCTTAGCCCGTACCTGAATGACAATTTTGACATGGACGATGATATGGATGACTTAGATTCGGAATCTGAACTAGATGTTGATAGCAGTGGGGAAATAGTCTATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

362

Amino Acids

40.96

Weight (kDa)

4.72

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 279	4e-73	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	25 - 275	7.9e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50500 AT3G50500 AT5G66880 AT5G66880
fragaria_vesca	FvH4_1g15440 FvH4_1g15440 FvH4_1g15440 FvH4_1g15440
malus_domestica	MD02G1166500.v1.1 MD15G1279000.v1.1
prunus_persica	Prupe.7G138200_v2.0.a1 Prupe.7G138200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104671
rosa_laevigata	RLG00000017350
rosa_multiflora	Rmu_sc0002316.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138850
rosa_rugosa	Rorug02G0121700
rosa_samantha	Rh2BG179500 Rh2DG178300
rosa_wichuraiana	Rw2G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	965
AccBSI	CCGCTC	1 cut(s)	319
AccII	CGCG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	684
AciI	CCGC	5 cut(s)	11, 14, 168, 319, 852
AclWI	GGATC	4 cut(s)	12, 652, 656, 669
AcsI	RAATTY	2 cut(s)	702, 774
AcuI	CTGAAG	2 cut(s)	325, 489
AfaI	GTAC	3 cut(s)	68, 494, 989
AfiI	CCNNNNNNNGG	1 cut(s)	965
AgsI	TTSAA	4 cut(s)	247, 430, 761, 841
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	142, 310, 464
AluI	AGCT	3 cut(s)	142, 310, 464
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	4 cut(s)	12, 652, 656, 669
AlwNI	CAGNNNCTG	3 cut(s)	396, 734, 791
Aor13HI	TCCGGA	1 cut(s)	684
AoxI	GGCC	2 cut(s)	26, 948
ApeKI	GCWGC	1 cut(s)	794
ApoI	RAATTY	2 cut(s)	702, 774
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	2 cut(s)	168, 339
AspS9I	GGNCC	2 cut(s)	26, 90
AsuC2I	CCSGG	2 cut(s)	94, 422
AsuHPI	GGTGA	2 cut(s)	28, 410
AsuII	TTCGAA	1 cut(s)	891
AvaII	GGWCC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	495, 695
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	945
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	7 cut(s)	28, 279, 446, 581, 634, 856, 871
BceAI	ACGGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 871, 905
BclI	TGATCA	1 cut(s)	901
BcnI	CCSGG	2 cut(s)	94, 422
BfaI	CTAG	1 cut(s)	1049
BfmI	CTRYAG	2 cut(s)	531, 597
BfoI	RGCGCY	1 cut(s)	340
BglII	AGATCT	1 cut(s)	856
BisI	GCNGC	3 cut(s)	12, 169, 795
BlsI	GCNGC	3 cut(s)	13, 170, 796
Bme1390I	CCNGG	2 cut(s)	94, 422
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	26, 90
BmiI	GGNNCC	4 cut(s)	27, 91, 227, 663
BmrFI	CCNGG	2 cut(s)	94, 422
BmsI	GCATC	1 cut(s)	900
BpiI	GAAGAC	2 cut(s)	495, 695
BpmI	CTGGAG	2 cut(s)	405, 543
Bpu10I	CCTNAGC	1 cut(s)	945
Bpu14I	TTCGAA	1 cut(s)	891
BpuMI	CCSGG	2 cut(s)	94, 422
BsaJI	CCNNGG	2 cut(s)	135, 830
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	1 cut(s)	965
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	3 cut(s)	334, 411, 552
BseAI	TCCGGA	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	135, 830
BseGI	GGATG	3 cut(s)	457, 871, 1030
BseLI	CCNNNNNNNGG	1 cut(s)	965
BseMI	GCAATG	3 cut(s)	334, 411, 552
BseMII	CTCAG	3 cut(s)	563, 721, 936
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	2 cut(s)	318, 456
BseXI	GCAGC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	28, 950
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	29, 93, 421, 685
BslFI	GGGAC	2 cut(s)	437, 767
BslI	CCNNNNNNNGG	1 cut(s)	965
BsmFI	GGGAC	2 cut(s)	437, 767
BsnI	GGCC	2 cut(s)	28, 950
Bsp119I	TTCGAA	1 cut(s)	891
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	684
Bsp143I	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
Bsp19I	CCATGG	1 cut(s)	830
BspACI	CCGC	5 cut(s)	11, 14, 168, 319, 852
BspANI	GGCC	2 cut(s)	28, 950
BspCNI	CTCAG	3 cut(s)	564, 720, 937
BspEI	TCCGGA	1 cut(s)	684
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	4 cut(s)	27, 91, 227, 663
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	4 cut(s)	12, 652, 656, 669
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	891
BspT107I	GGYRCC	1 cut(s)	225
BsrBI	CCGCTC	1 cut(s)	319
BsrDI	GCAATG	3 cut(s)	334, 411, 552
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	715
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	135, 830
BssMI	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
BssSI	CACGAG	1 cut(s)	747
BssT1I	CCWWGG	2 cut(s)	135, 830
Bst2BI	CACGAG	1 cut(s)	747
Bst4CI	ACNGT	4 cut(s)	22, 59, 398, 535
Bst6I	CTCTTC	1 cut(s)	888
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	891
BstC8I	GCNNGC	2 cut(s)	30, 358
BstDEI	CTNAG	5 cut(s)	572, 707, 945, 980, 1030
BstDSI	CCRYGG	1 cut(s)	830
BstF5I	GGATG	3 cut(s)	457, 871, 1030
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	168, 339
BstKTI	GATC	6 cut(s)	7, 48, 647, 664, 859, 904
BstMBI	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 316, 554
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	92, 420
BstSFI	CTRYAG	2 cut(s)	531, 597
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	781
BstV2I	GAAGAC	2 cut(s)	495, 695
BstX2I	RGATCY	2 cut(s)	661, 856
BstYI	RGATCY	2 cut(s)	661, 856
BsuRI	GGCC	2 cut(s)	28, 950
BtgI	CCRYGG	1 cut(s)	830
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	457, 871, 1030
BtsI	GCAGTG	1 cut(s)	1069
BtsIMutI	CAGTG	6 cut(s)	64, 349, 513, 540, 715, 1069
Cac8I	GCNNGC	2 cut(s)	30, 358
CaiI	CAGNNNCTG	3 cut(s)	396, 734, 791
CfoI	GCGC	2 cut(s)	168, 339
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	26, 90
Csp6I	GTAC	3 cut(s)	67, 493, 988
CviAII	CATG	7 cut(s)	40, 49, 401, 612, 831, 931, 1009
CviJI	RGCY	9 cut(s)	28, 115, 142, 310, 356, 464, 898, 950, 984
CviKI_1	RGCY	9 cut(s)	28, 115, 142, 310, 356, 464, 898, 950, 984
CviQI	GTAC	3 cut(s)	67, 493, 988
DdeI	CTNAG	5 cut(s)	572, 707, 945, 980, 1030
DpnI	GATC	6 cut(s)	6, 47, 646, 663, 858, 903
DpnII	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
Eam1104I	CTCTTC	1 cut(s)	888
EarI	CTCTTC	1 cut(s)	888
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	135, 830
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	2 cut(s)	85, 768
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	325, 489
EcoICRI	GAGCTC	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	702
EcoRV	GATATC	2 cut(s)	85, 768
EcoT14I	CCWWGG	2 cut(s)	135, 830
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	135, 830
FaeI	CATG	7 cut(s)	43, 52, 404, 615, 834, 934, 1012
FaqI	GGGAC	2 cut(s)	437, 767
FatI	CATG	7 cut(s)	39, 48, 400, 611, 830, 930, 1008
FauI	CCCGC	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	901
Fnu4HI	GCNGC	3 cut(s)	12, 169, 795
FokI	GGATG	3 cut(s)	464, 878, 1037
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	12, 169, 795
FspBI	CTAG	1 cut(s)	1049
GlaI	GCGC	2 cut(s)	167, 338
GluI	GCNGC	3 cut(s)	12, 169, 795
GsuI	CTGGAG	2 cut(s)	405, 543
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	28, 950
HapII	CCGG	4 cut(s)	29, 93, 421, 685
HhaI	GCGC	2 cut(s)	168, 339
Hin1II	CATG	7 cut(s)	43, 52, 404, 615, 834, 934, 1012
Hin6I	GCGC	2 cut(s)	166, 337
HinP1I	GCGC	2 cut(s)	166, 337
HinfI	GANTC	7 cut(s)	262, 387, 731, 844, 969, 1034, 1040
HpaII	CCGG	4 cut(s)	29, 93, 421, 685
HphI	GGTGA	2 cut(s)	28, 410
Hpy188I	TCNGA	5 cut(s)	195, 261, 861, 1039, 1045
HpyCH4III	ACNGT	4 cut(s)	22, 59, 398, 535
HpyCH4V	TGCA	9 cut(s)	52, 327, 332, 404, 409, 548, 599, 913, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 316, 554
HpyF3I	CTNAG	5 cut(s)	572, 707, 945, 980, 1030
Hsp92II	CATG	7 cut(s)	43, 52, 404, 615, 834, 934, 1012
HspAI	GCGC	2 cut(s)	166, 337
Kpn2I	TCCGGA	1 cut(s)	684
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	901
Kzo9I	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	3 cut(s)	139, 469, 562
Lsp1109I	GCAGC	1 cut(s)	781
LweI	GCATC	1 cut(s)	900
MaeI	CTAG	1 cut(s)	1049
MaeIII	GTNAC	4 cut(s)	16, 392, 416, 619
MalI	GATC	6 cut(s)	6, 47, 646, 663, 858, 903
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
MboII	GAAGA	4 cut(s)	495, 700, 853, 905
MflI	RGATCY	2 cut(s)	661, 856
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	6 cut(s)	702, 761, 774, 801, 939, 1000
MlyI	GAGTC	2 cut(s)	256, 396
MmeI	TCCRAC	4 cut(s)	394, 414, 429, 946
MroI	TCCGGA	1 cut(s)	684
MroNI	GCCGGC	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	2 cut(s)	473, 1087
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	4 cut(s)	29, 93, 421, 685
MspR9I	CCNGG	2 cut(s)	94, 422
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	49, 316, 554
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	2 cut(s)	94, 422
NcoI	CCATGG	1 cut(s)	830
NdeII	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	7 cut(s)	43, 52, 404, 615, 834, 934, 1012
NlaIV	GGNNCC	4 cut(s)	27, 91, 227, 663
NmuCI	GTSAC	2 cut(s)	16, 416
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	891
OliI	CACNNNNGTG	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	888
PdiI	GCCGGC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	5 cut(s)	731, 844, 969, 1034, 1040
PflMI	CCANNNNNTGG	1 cut(s)	965
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	13, 170, 796
PleI	GAGTC	2 cut(s)	256, 395
PpsI	GAGTC	2 cut(s)	256, 395
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	4 cut(s)	27, 91, 227, 663
PspPI	GGNCC	2 cut(s)	26, 90
PstI	CTGCAG	1 cut(s)	601
PstNI	CAGNNNCTG	3 cut(s)	396, 734, 791
PsuI	RGATCY	2 cut(s)	661, 856
RsaI	GTAC	3 cut(s)	68, 494, 989
RsaNI	GTAC	3 cut(s)	67, 493, 988
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	473, 1087
SatI	GCNGC	3 cut(s)	12, 169, 795
Sau3AI	GATC	6 cut(s)	4, 45, 644, 661, 856, 901
Sau96I	GGNCC	2 cut(s)	26, 90
SchI	GAGTC	2 cut(s)	256, 396
ScrFI	CCNGG	2 cut(s)	94, 422
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	68, 144, 218, 245, 255, 312, 466, 993
SfaNI	GCATC	1 cut(s)	900
SfcI	CTRYAG	2 cut(s)	531, 597
SfuI	TTCGAA	1 cut(s)	891
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	6 cut(s)	702, 761, 774, 801, 939, 1000
SsiI	CCGC	5 cut(s)	11, 14, 168, 319, 852
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	1049
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	92, 420
StyI	CCWWGG	2 cut(s)	135, 830
TaaI	ACNGT	4 cut(s)	22, 59, 398, 535
TaqI	TCGA	3 cut(s)	162, 315, 891
TasI	AATT	6 cut(s)	702, 761, 774, 801, 939, 1000
TauI	GCSGC	2 cut(s)	14, 171
TfiI	GAWTC	5 cut(s)	731, 844, 969, 1034, 1040
Tru1I	TTAA	2 cut(s)	473, 1087
Tru9I	TTAA	2 cut(s)	473, 1087
TscAI	CASTG	6 cut(s)	64, 349, 513, 540, 715, 1069
TseFI	GTSAC	2 cut(s)	16, 416
TseI	GCWGC	1 cut(s)	794
Tsp45I	GTSAC	2 cut(s)	16, 416
TspDTI	ATGAA	3 cut(s)	198, 503, 684
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	6 cut(s)	64, 349, 513, 540, 715, 1069
Van91I	CCANNNNNTGG	1 cut(s)	965
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	2 cut(s)	702, 774
XceI	RCATGY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.