Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0010640

Physical Location & Seq

Genomic Coordinates Reverse (-)

15548626 .. 15552395

Gene Structure 3770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017350

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGATCGGGCGGCGGTGACGGTGGGGCCGGCGATGGACATGCCGATCATGCACGACAGTGATAGGTACGATTTCGTGAGGGATATCGGGTCCGGGAACTTCGGGGTGGCGAGGCTGATGAGGGACAAGCAGACCAAGGAGCTCGTTGCCGTCAAGTATATCGAGCGCGGCAACAAGATTGATGAAAATGTTCAGAGAGAAATAATCAATCATAGGTCGTTGAGGCACCCCAACATTGTTAGGTTCAAAGAGCAAGTATGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGTCCAGCTCCTCGCTTAAAGATATGTGATTTTGGGTACTCAAAGTCTTCAGTGCTTCATTCACAACCAAAATCTACAGTAGGAACTCCTGCATACATTGCTCCCGAAGTATTACTGAGGCAAGAGTATGATGGAAAGACGGCAGATGTATGGTCATGTGGGGTAACTTTGTATGTGATGTTGATGGGATCATATCCTTTTGAAGATCCCGATGAACCAAAGGATTTCCGGAAGACGATACAAAGAATTCTCAGTGTCCAGTATGCCATTCCAGATTCTGTGCCATTATCTCGTGAATGTCTTGAACTGATATCAAGAATTTTCGTGCCAGACCCTGCTGCGAGAATTACCATTCCTGAAATAAAGAACCACCCATGGTTCTTGAAGAATCTCCCTGCAGATTTGATGGATGAGATGACGATGGGCAACCATTTCGAAGAGCCTGATCAACCGATGCAGAGCATTGATACAATCATGCAAATAATTGCTGAGGCCACTATACCAGCAGTTGGAATCCACAATCTTAGCCCGTACCTGAATGACAATTTTGACATGGACGATGATATGGATGACTTAGATTCGGAATCTGAACTAGATGTTGATAGCAGTGGGGAAATAGTCTATGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009755 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

311

Amino Acids

35.17

Weight (kDa)

4.73

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 84	4.7e-10	Protein kinase domain
Pkinase	PF00069	83 - 227	5.7e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 223	1.2e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010640)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50500 AT3G50500 AT5G66880 AT5G66880
fragaria_vesca	FvH4_1g15440 FvH4_1g15440 FvH4_1g15440 FvH4_1g15440
malus_domestica	MD02G1166500.v1.1 MD15G1279000.v1.1
prunus_persica	Prupe.7G138200_v2.0.a1 Prupe.7G138200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104671
rosa_laevigata	RLG00000017350
rosa_multiflora	Rmu_sc0002316.1_g000023
rosa_roxburghii	Rroxscaffold_2G00138850
rosa_rugosa	Rorug02G0121700
rosa_samantha	Rh2BG179500 Rh2DG178300
rosa_wichuraiana	Rw2G013460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccII	CGCG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	528
AciI	CCGC	3 cut(s)	11, 14, 168
AclWI	GGATC	3 cut(s)	12, 496, 500
AcsI	RAATTY	2 cut(s)	546, 618
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	3 cut(s)	68, 338, 833
AfiI	CCNNNNNNNGG	1 cut(s)	809
AgsI	TTSAA	5 cut(s)	247, 274, 503, 605, 685
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	2 cut(s)	142, 308
AluI	AGCT	2 cut(s)	142, 308
Alw21I	GWGCWC	1 cut(s)	144
AlwI	GGATC	3 cut(s)	12, 496, 500
AlwNI	CAGNNNCTG	2 cut(s)	578, 635
Aor13HI	TCCGGA	1 cut(s)	528
AoxI	GGCC	2 cut(s)	26, 792
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	546, 618
Asp700I	GAANNNNTTC	1 cut(s)	189
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	26, 90
AsuC2I	CCSGG	2 cut(s)	94, 266
AsuHPI	GGTGA	2 cut(s)	28, 254
AsuII	TTCGAA	1 cut(s)	735
AvaII	GGWCC	1 cut(s)	90
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	591
BbsI	GAAGAC	2 cut(s)	339, 539
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	789
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	6 cut(s)	28, 290, 425, 478, 700, 715
BceAI	ACGGC	2 cut(s)	134, 456
BcgI	CGANNNNNNTGC	4 cut(s)	22, 56, 715, 749
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	2 cut(s)	94, 266
BfaI	CTAG	1 cut(s)	893
BfmI	CTRYAG	2 cut(s)	375, 696
BisI	GCNGC	3 cut(s)	12, 169, 639
BlsI	GCNGC	3 cut(s)	13, 170, 640
Bme1390I	CCNGG	2 cut(s)	94, 266
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	2 cut(s)	26, 90
BmiI	GGNNCC	3 cut(s)	27, 91, 227
BmrFI	CCNGG	2 cut(s)	94, 266
BmsI	GCATC	1 cut(s)	744
BpiI	GAAGAC	2 cut(s)	339, 539
Bpu10I	CCTNAGC	1 cut(s)	789
Bpu14I	TTCGAA	1 cut(s)	735
BpuMI	CCSGG	2 cut(s)	94, 266
BsaJI	CCNNGG	2 cut(s)	135, 674
BsaWI	WCCGGW	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	559
Bse3DI	GCAATG	1 cut(s)	396
BseAI	TCCGGA	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	135, 674
BseGI	GGATG	3 cut(s)	301, 715, 874
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	407, 565, 780
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	625
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	28, 794
BshNI	GGYRCC	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	4 cut(s)	29, 93, 265, 529
BslFI	GGGAC	2 cut(s)	137, 281
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmFI	GGGAC	2 cut(s)	137, 281
BsnI	GGCC	2 cut(s)	28, 794
Bsp119I	TTCGAA	1 cut(s)	735
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp13I	TCCGGA	1 cut(s)	528
Bsp143I	GATC	5 cut(s)	4, 45, 488, 505, 745
Bsp19I	CCATGG	1 cut(s)	674
BspACI	CCGC	3 cut(s)	11, 14, 168
BspANI	GGCC	2 cut(s)	28, 794
BspCNI	CTCAG	3 cut(s)	408, 564, 781
BspEI	TCCGGA	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	3 cut(s)	27, 91, 227
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	3 cut(s)	12, 496, 500
BspQI	GCTCTTC	1 cut(s)	732
BspT104I	TTCGAA	1 cut(s)	735
BspT107I	GGYRCC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	1 cut(s)	559
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	135, 674
BssMI	GATC	5 cut(s)	4, 45, 488, 505, 745
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	135, 674
Bst2BI	CACGAG	1 cut(s)	591
Bst4CI	ACNGT	3 cut(s)	22, 59, 379
Bst6I	CTCTTC	1 cut(s)	732
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstBI	TTCGAA	1 cut(s)	735
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	5 cut(s)	416, 551, 789, 824, 874
BstDSI	CCRYGG	1 cut(s)	674
BstF5I	GGATG	3 cut(s)	301, 715, 874
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	5 cut(s)	7, 48, 491, 508, 748
BstMBI	GATC	5 cut(s)	4, 45, 488, 505, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 398
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	92, 264
BstSFI	CTRYAG	2 cut(s)	375, 696
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	625
BstV2I	GAAGAC	2 cut(s)	339, 539
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	28, 794
BtgI	CCRYGG	1 cut(s)	674
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	3 cut(s)	301, 715, 874
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	4 cut(s)	64, 357, 559, 913
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	2 cut(s)	578, 635
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	26, 90
Csp6I	GTAC	3 cut(s)	67, 337, 832
CviAII	CATG	6 cut(s)	40, 49, 456, 675, 775, 853
CviJI	RGCY	7 cut(s)	28, 115, 142, 308, 742, 794, 828
CviKI_1	RGCY	7 cut(s)	28, 115, 142, 308, 742, 794, 828
CviQI	GTAC	3 cut(s)	67, 337, 832
DdeI	CTNAG	5 cut(s)	416, 551, 789, 824, 874
DpnI	GATC	5 cut(s)	6, 47, 490, 507, 747
DpnII	GATC	5 cut(s)	4, 45, 488, 505, 745
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	2 cut(s)	135, 674
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	2 cut(s)	85, 612
Eco47I	GGWCC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	546
EcoRV	GATATC	2 cut(s)	85, 612
EcoT14I	CCWWGG	2 cut(s)	135, 674
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	2 cut(s)	135, 674
FaeI	CATG	6 cut(s)	43, 52, 459, 678, 778, 856
FaqI	GGGAC	2 cut(s)	137, 281
FatI	CATG	6 cut(s)	39, 48, 455, 674, 774, 852
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	3 cut(s)	12, 169, 639
FokI	GGATG	3 cut(s)	308, 722, 881
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	12, 169, 639
FspBI	CTAG	1 cut(s)	893
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	3 cut(s)	12, 169, 639
HaeIII	GGCC	2 cut(s)	28, 794
HapII	CCGG	4 cut(s)	29, 93, 265, 529
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	6 cut(s)	43, 52, 459, 678, 778, 856
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	575, 688, 813, 878, 884
HpaII	CCGG	4 cut(s)	29, 93, 265, 529
HphI	GGTGA	2 cut(s)	28, 254
Hpy188I	TCNGA	3 cut(s)	195, 883, 889
HpyCH4III	ACNGT	3 cut(s)	22, 59, 379
HpyCH4V	TGCA	5 cut(s)	52, 392, 698, 757, 778
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 398
HpyF3I	CTNAG	5 cut(s)	416, 551, 789, 824, 874
Hsp92II	CATG	6 cut(s)	43, 52, 459, 678, 778, 856
HspAI	GCGC	1 cut(s)	166
Kpn2I	TCCGGA	1 cut(s)	528
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	5 cut(s)	4, 45, 488, 505, 745
LguI	GCTCTTC	1 cut(s)	732
LmnI	GCTCC	3 cut(s)	139, 313, 406
Lsp1109I	GCAGC	1 cut(s)	625
LweI	GCATC	1 cut(s)	744
MaeI	CTAG	1 cut(s)	893
MaeIII	GTNAC	3 cut(s)	16, 260, 463
MalI	GATC	5 cut(s)	6, 47, 490, 507, 747
MboI	GATC	5 cut(s)	4, 45, 488, 505, 745
MboII	GAAGA	5 cut(s)	339, 515, 544, 697, 749
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	5 cut(s)	546, 618, 645, 783, 844
MmeI	TCCRAC	3 cut(s)	258, 273, 790
MnlI	CCTC	7 cut(s)	72, 105, 114, 216, 321, 411, 784
MroI	TCCGGA	1 cut(s)	528
MroNI	GCCGGC	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	2 cut(s)	317, 931
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	4 cut(s)	29, 93, 265, 529
MspR9I	CCNGG	2 cut(s)	94, 266
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	49, 398
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	2 cut(s)	94, 266
NcoI	CCATGG	1 cut(s)	674
NdeII	GATC	5 cut(s)	4, 45, 488, 505, 745
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	6 cut(s)	43, 52, 459, 678, 778, 856
NlaIV	GGNNCC	3 cut(s)	27, 91, 227
NmuCI	GTSAC	2 cut(s)	16, 260
NspI	RCATGY	1 cut(s)	43
NspV	TTCGAA	1 cut(s)	735
OliI	CACNNNNGTG	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	732
PdiI	GCCGGC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	5 cut(s)	575, 688, 813, 878, 884
PflMI	CCANNNNNTGG	1 cut(s)	809
PfoI	TCCNGGA	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	13, 170, 640
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	3 cut(s)	27, 91, 227
PspPI	GGNCC	2 cut(s)	26, 90
PstI	CTGCAG	1 cut(s)	700
PstNI	CAGNNNCTG	2 cut(s)	578, 635
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	3 cut(s)	68, 338, 833
RsaNI	GTAC	3 cut(s)	67, 337, 832
RseI	CAYNNNNRTG	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	317, 931
SatI	GCNGC	3 cut(s)	12, 169, 639
Sau3AI	GATC	5 cut(s)	4, 45, 488, 505, 745
Sau96I	GGNCC	2 cut(s)	26, 90
ScrFI	CCNGG	2 cut(s)	94, 266
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	6 cut(s)	68, 144, 218, 245, 310, 837
SfaNI	GCATC	1 cut(s)	744
SfcI	CTRYAG	2 cut(s)	375, 696
SfuI	TTCGAA	1 cut(s)	735
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	5 cut(s)	546, 618, 645, 783, 844
SsiI	CCGC	3 cut(s)	11, 14, 168
SspMI	CTAG	1 cut(s)	893
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	92, 264
StyI	CCWWGG	2 cut(s)	135, 674
TaaI	ACNGT	3 cut(s)	22, 59, 379
TaqI	TCGA	2 cut(s)	162, 735
TasI	AATT	5 cut(s)	546, 618, 645, 783, 844
TauI	GCSGC	2 cut(s)	14, 171
TfiI	GAWTC	5 cut(s)	575, 688, 813, 878, 884
Tru1I	TTAA	2 cut(s)	317, 931
Tru9I	TTAA	2 cut(s)	317, 931
TscAI	CASTG	4 cut(s)	64, 357, 559, 913
TseFI	GTSAC	2 cut(s)	16, 260
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	2 cut(s)	16, 260
TspDTI	ATGAA	3 cut(s)	198, 347, 528
TspRI	CASTG	4 cut(s)	64, 357, 559, 913
Van91I	CCANNNNNTGG	1 cut(s)	809
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	2 cut(s)	546, 618
XceI	RCATGY	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.