Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013261

Physical Location & Seq

Genomic Coordinates Reverse (-)

19006993 .. 19008724

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCGTCAGAGAACAACGGATCCAGATCCGATTCCGAATCCATCACCGCTCCCAAAGCTGATTCCACCGTCGTTGAACCGAGGAAGATAGCTCTGATCACCGGAATCACCGGCCAGGACGGATCATACCTGACGGAGTTCCTTCTCGGAAAAGGCTACGAAGTTCATGGTCTGATCCGTCGATCATCGAATTTCAACACCCAGCGAATCAACCATATCTACATCGATCCACACAATGTCAACAAAGCTCTGATGAAACTCCACTACGCCGATCTCACCGACGCTTCCTCTCTCCGTCGTTGGATCGATGTGATCAAACCTGACGAAGTTTATAACCTAGCTGCTCAATCTCACGTCGCTGTCTCCTTCGAGATCCCTGATTACACAGCCGATGTAGTCGCAACCGGTGCTCTCCGTCTCCTTGAAGCCGTCAGATCTCACACCATCGACAGTGGCCGTACCGTCAAGTATTACCAAGCCGGATCTTCGGAGATGTTTGGATCAACTCCTCCTCCACAATCGGAGACGACGCCGTTTCACCCCAGATCTCCTTACGCAGCTTCCAAATGCGCTGCTCATTGGTACACAGTGAATTACAGAGAGGCGTACGGTCTCTTCGCTTGTAACGGAATCTTGTTCAATCACGAGTCACCTCGCCGTGGTGAGAATTTCGTGACGAGGAAGATCACAAGAGCATTGGGAAGGATCAAGGTTGGTTTGCAGACGAAGCTATTCCTTGGGAATTTGCAAGCGTCAAGAGATTGGGGATTTGCAGGAGATTATGTGGAAGCAATGTGGTTGATGTTGCAGCAAGAGAAGCCAGATGATTACGTTGTGGCAACAGAGGAAGGACACACAGTGGAAGAGTTTCTTGATGTGTCATTTGGGTATTTGGGACTCAATTGGAAAGATTATGTTGAGATTGACCAGAGGTACTTTAGGCCTGCTGAAGTAGATAACCTTCAAGGAGATGCAAGCAAGGCAAAGGAAGTGTTGGGGTGGAAACCACAAGTAGGGTTTGAGAAGCTTGTGAAGATGATGGTTGATGAAGATCTTGAGCTTGCTAAGAGGGAGAAAGTGCTTGTTGATGCTGGATACATGGATGCTAAGCAGCAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008446 GO:0009058 GO:0009225 GO:0009226 GO:0009653 GO:0009826 GO:0009987 GO:0016043 GO:0016049 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0032502 GO:0032989 GO:0034641 GO:0034654 GO:0040007 GO:0042350 GO:0042351 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046368 GO:0046483 GO:0048589 GO:0048856 GO:0048869 GO:0055086 GO:0060560 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00051 ko00520 ko01100 map00051 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

373

Amino Acids

41.96

Weight (kDa)

5.75

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	31 - 280	2.1e-73	NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd	PF16363	32 - 347	2.6e-139	GDP-mannose 4,6 dehydratase
RmlD_sub_bind	PF04321	32 - 203	1e-05	RmlD substrate binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51160 AT5G66280
fragaria_vesca	FvH4_1g12010
malus_domestica	MD02G1134100.v1.1 MD15G1247100.v1.1
prunus_persica	Prupe.7G166700_v2.0.a1
pyrus_communis	pycom02g10570
rosa_chinensis	RchiOBHm_Chr2g0099631
rosa_laevigata	RLG00000016899
rosa_multiflora	Rmu_sc0010438.1_g000002 Rmu_sc0028266.1_g000001
rosa_roxburghii	Rroxscaffold_2G00142890
rosa_rugosa	Rorug02G0081700
rosa_samantha	Rh2AG131200 Rh2BG134400 Rh2CG135400 Rh2DG135800
rosa_wichuraiana	Rw2G010140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccBSI	CCGCTC	1 cut(s)	50
AciI	CCGC	1 cut(s)	48
AcoI	YGGCCR	2 cut(s)	112, 454
AcsI	RAATTY	3 cut(s)	190, 667, 742
AcuI	CTGAAG	1 cut(s)	969
AcyI	GRCGYC	2 cut(s)	5, 530
AdeI	CACNNNGTG	1 cut(s)	859
AfaI	GTAC	4 cut(s)	460, 584, 608, 935
AfiI	CCNNNNNNNGG	2 cut(s)	659, 1013
AgeI	ACCGGT	1 cut(s)	404
AgsI	TTSAA	5 cut(s)	77, 196, 425, 640, 965
AjiI	CACGTC	1 cut(s)	355
AjnI	CCWGG	1 cut(s)	114
AloI	GAACNNNNNNTCC	1 cut(s)	37
AluBI	AGCT	8 cut(s)	59, 92, 248, 341, 560, 730, 1027, 1060
AluI	AGCT	8 cut(s)	59, 92, 248, 341, 560, 730, 1027, 1060
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	4 cut(s)	367, 422, 518, 617
AoxI	GGCC	3 cut(s)	112, 454, 941
ApeKI	GCWGC	5 cut(s)	341, 557, 572, 808, 1111
ApoI	RAATTY	3 cut(s)	190, 667, 742
AsiGI	ACCGGT	1 cut(s)	404
Asp700I	GAANNNNTTC	2 cut(s)	731, 867
AspLEI	GCGC	1 cut(s)	572
AsuHPI	GGTGA	7 cut(s)	37, 91, 100, 268, 530, 642, 674
BamHI	GGATCC	1 cut(s)	20
BarI	GAAGNNNNNNTAC	4 cut(s)	599, 631, 945, 977
BauI	CACGAG	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	4 cut(s)	328, 559, 569, 820
BccI	CCATC	3 cut(s)	50, 452, 1033
BceAI	ACGGC	4 cut(s)	413, 441, 517, 642
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	1088
BclI	TGATCA	2 cut(s)	96, 312
BcoDI	GTCTC	4 cut(s)	367, 422, 518, 617
BfaI	CTAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	1088
BglII	AGATCT	3 cut(s)	434, 545, 1051
BisI	GCNGC	5 cut(s)	342, 558, 573, 809, 1112
BlpI	GCTNAGC	1 cut(s)	1107
BlsI	GCNGC	5 cut(s)	343, 559, 574, 810, 1113
Bme1390I	CCNGG	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	961, 1078, 1093
Bpu1102I	GCTNAGC	1 cut(s)	1107
BpuEI	CTTGAG	1 cut(s)	1076
Bsa29I	ATCGAT	2 cut(s)	225, 306
BsaBI	GATNNNNATC	2 cut(s)	25, 1050
BsaHI	GRCGYC	2 cut(s)	5, 530
BsaI	GGTCTC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	80, 658, 736
BsaWI	WCCGGW	2 cut(s)	101, 404
BsaXI	ACNNNNNCTCC	4 cut(s)	496, 526, 768, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	659, 1013
Bse118I	RCCGGY	2 cut(s)	110, 404
Bse3DI	GCAATG	1 cut(s)	798
Bse8I	GATNNNNATC	2 cut(s)	25, 1050
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	2 cut(s)	225, 306
BseDI	CCNNGG	3 cut(s)	80, 658, 736
BseGI	GGATG	1 cut(s)	1108
BseJI	GATNNNNATC	2 cut(s)	25, 1050
BseLI	CCNNNNNNNGG	2 cut(s)	659, 1013
BseMI	GCAATG	1 cut(s)	798
BseRI	GAGGAG	2 cut(s)	498, 501
BseXI	GCAGC	4 cut(s)	328, 559, 569, 820
BseYI	CCCAGC	1 cut(s)	201
BshFI	GGCC	3 cut(s)	114, 456, 943
BshTI	ACCGGT	1 cut(s)	404
BshVI	ATCGAT	2 cut(s)	225, 306
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	4 cut(s)	102, 111, 405, 480
BsiWI	CGTACG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	909
BslI	CCNNNNNNNGG	2 cut(s)	659, 1013
BsmAI	GTCTC	4 cut(s)	367, 422, 518, 617
BsmBI	CGTCTC	2 cut(s)	422, 518
BsmFI	GGGAC	1 cut(s)	909
BsnI	GGCC	3 cut(s)	114, 456, 943
Bso31I	GGTCTC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp1720I	GCTNAGC	1 cut(s)	1107
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	3 cut(s)	114, 456, 943
BspDI	ATCGAT	2 cut(s)	225, 306
BspLI	GGNNCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	798
BsrFI	RCCGGY	2 cut(s)	110, 404
BssAI	RCCGGY	2 cut(s)	110, 404
BssECI	CCNNGG	3 cut(s)	80, 658, 736
BssNI	GRCGYC	2 cut(s)	5, 530
BssSI	CACGAG	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	736
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	6 cut(s)	70, 452, 463, 589, 611, 859
Bst6I	CTCTTC	2 cut(s)	620, 858
BstACI	GRCGYC	2 cut(s)	5, 530
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstC8I	GCNNGC	4 cut(s)	750, 945, 976, 1062
BstDEI	CTNAG	2 cut(s)	1065, 1107
BstDSI	CCRYGG	1 cut(s)	658
BstF5I	GGATG	1 cut(s)	1108
BstHHI	GCGC	1 cut(s)	572
BstMAI	GTCTC	4 cut(s)	367, 422, 518, 617
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 407, 727, 817, 980
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	4 cut(s)	328, 559, 569, 820
BstX2I	RGATCY	7 cut(s)	20, 26, 372, 434, 482, 545, 1051
BstYI	RGATCY	7 cut(s)	20, 26, 372, 434, 482, 545, 1051
Bsu15I	ATCGAT	2 cut(s)	225, 306
BsuI	GTATCC	1 cut(s)	1088
BsuRI	GGCC	3 cut(s)	114, 456, 943
BsuTUI	ATCGAT	2 cut(s)	225, 306
BtgI	CCRYGG	1 cut(s)	658
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	1108
BtsIMutI	CAGTG	3 cut(s)	457, 594, 864
Cac8I	GCNNGC	4 cut(s)	750, 945, 976, 1062
CfoI	GCGC	1 cut(s)	572
Cfr10I	RCCGGY	2 cut(s)	110, 404
ClaI	ATCGAT	2 cut(s)	225, 306
CseI	GACGC	3 cut(s)	290, 538, 741
Csp6I	GTAC	4 cut(s)	459, 583, 607, 934
CspAI	ACCGGT	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	2 cut(s)	167, 1099
CviQI	GTAC	4 cut(s)	459, 583, 607, 934
DdeI	CTNAG	2 cut(s)	1065, 1107
DraIII	CACNNNGTG	1 cut(s)	859
EaeI	YGGCCR	2 cut(s)	112, 454
Eam1104I	CTCTTC	2 cut(s)	620, 858
EarI	CTCTTC	2 cut(s)	620, 858
Eco130I	CCWWGG	1 cut(s)	736
Eco147I	AGGCCT	1 cut(s)	943
Eco31I	GGTCTC	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	969
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	736
ErhI	CCWWGG	1 cut(s)	736
Esp3I	CGTCTC	2 cut(s)	422, 518
FaeI	CATG	2 cut(s)	170, 1102
FaiI	YATR	7 cut(s)	127, 168, 216, 333, 783, 915, 1100
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FaqI	GGGAC	1 cut(s)	909
FatI	CATG	2 cut(s)	166, 1098
FbaI	TGATCA	2 cut(s)	96, 312
Fnu4HI	GCNGC	5 cut(s)	342, 558, 573, 809, 1112
FokI	GGATG	1 cut(s)	1115
Fsp4HI	GCNGC	5 cut(s)	342, 558, 573, 809, 1112
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	5 cut(s)	342, 558, 573, 809, 1112
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	114, 456, 943
HapII	CCGG	4 cut(s)	102, 111, 405, 480
HgaI	GACGC	3 cut(s)	290, 538, 741
HhaI	GCGC	1 cut(s)	572
Hin1I	GRCGYC	2 cut(s)	5, 530
Hin1II	CATG	2 cut(s)	170, 1102
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	1025
HinfI	GANTC	8 cut(s)	32, 38, 62, 105, 207, 630, 647, 897
HpaII	CCGG	4 cut(s)	102, 111, 405, 480
HphI	GGTGA	7 cut(s)	37, 91, 100, 268, 530, 642, 674
Hpy166II	GTNNAC	2 cut(s)	241, 585
Hpy188III	TCNNGA	7 cut(s)	24, 370, 644, 673, 756, 872, 1055
Hpy8I	GTNNAC	2 cut(s)	241, 585
Hpy99I	CGWCG	6 cut(s)	74, 183, 284, 300, 359, 532
HpyAV	CCTTC	5 cut(s)	152, 376, 696, 842, 971
HpyCH4III	ACNGT	6 cut(s)	70, 452, 463, 589, 611, 859
HpyCH4IV	ACGT	2 cut(s)	354, 831
HpyCH4V	TGCA	5 cut(s)	721, 748, 773, 808, 974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 407, 727, 817, 980
HpyF3I	CTNAG	2 cut(s)	1065, 1107
HpySE526I	ACGT	2 cut(s)	354, 831
Hsp92I	GRCGYC	2 cut(s)	5, 530
Hsp92II	CATG	2 cut(s)	170, 1102
HspAI	GCGC	1 cut(s)	570
Ksp22I	TGATCA	2 cut(s)	96, 312
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	4 cut(s)	328, 559, 569, 820
LweI	GCATC	3 cut(s)	961, 1078, 1093
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	354, 831
MaeIII	GTNAC	3 cut(s)	623, 648, 673
MbiI	CCGCTC	1 cut(s)	50
MboII	GAAGA	7 cut(s)	97, 477, 607, 694, 875, 1045, 1061
MfeI	CAATTG	1 cut(s)	901
MflI	RGATCY	7 cut(s)	20, 26, 372, 434, 482, 545, 1051
MhlI	GDGCHC	1 cut(s)	412
MluCI	AATT	5 cut(s)	190, 592, 667, 742, 901
MlyI	GAGTC	2 cut(s)	656, 891
MmeI	TCCRAC	1 cut(s)	281
MroXI	GAANNNNTTC	2 cut(s)	731, 867
MspI	CCGG	4 cut(s)	102, 111, 405, 480
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	901
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	56, 407, 727, 817, 980
NlaIII	CATG	2 cut(s)	170, 1102
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	2 cut(s)	648, 673
PceI	AGGCCT	1 cut(s)	943
PdmI	GAANNNNTTC	2 cut(s)	731, 867
PfeI	GAWTC	6 cut(s)	32, 38, 62, 105, 207, 630
Pfl23II	CGTACG	1 cut(s)	606
PinAI	ACCGGT	1 cut(s)	404
PkrI	GCNGC	5 cut(s)	343, 559, 574, 810, 1113
PleI	GAGTC	2 cut(s)	655, 891
PpsI	GAGTC	2 cut(s)	655, 891
PsiI	TTATAA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	114
PspLI	CGTACG	1 cut(s)	606
PspN4I	GGNNCC	1 cut(s)	22
PsuI	RGATCY	7 cut(s)	20, 26, 372, 434, 482, 545, 1051
RsaI	GTAC	4 cut(s)	460, 584, 608, 935
RsaNI	GTAC	4 cut(s)	459, 583, 607, 934
SatI	GCNGC	5 cut(s)	342, 558, 573, 809, 1112
SchI	GAGTC	2 cut(s)	656, 891
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	412
SfaNI	GCATC	3 cut(s)	961, 1078, 1093
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
Sse9I	AATT	5 cut(s)	190, 592, 667, 742, 901
SseBI	AGGCCT	1 cut(s)	943
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	943
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	6 cut(s)	70, 452, 463, 589, 611, 859
TaiI	ACGT	2 cut(s)	357, 834
TaqI	TCGA	6 cut(s)	181, 188, 225, 306, 369, 447
TasI	AATT	5 cut(s)	190, 592, 667, 742, 901
TfiI	GAWTC	6 cut(s)	32, 38, 62, 105, 207, 630
TscAI	CASTG	3 cut(s)	457, 594, 864
TseFI	GTSAC	2 cut(s)	648, 673
TseI	GCWGC	5 cut(s)	341, 557, 572, 808, 1111
Tsp45I	GTSAC	2 cut(s)	648, 673
TspDTI	ATGAA	3 cut(s)	155, 269, 1062
TspGWI	ACGGA	7 cut(s)	33, 135, 149, 167, 284, 404, 642
TspRI	CASTG	3 cut(s)	457, 594, 864
XapI	RAATTY	3 cut(s)	190, 667, 742
XmnI	GAANNNNTTC	2 cut(s)	731, 867
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.