Rmu_sc0028266.1_g000001

GDP-mannose 4,6 dehydratase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028266.1
Physical Location & Seq
Forward (+)
1328 .. 2434
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028266.1_g000001.1.cds

Sequence Viewer

Length: 1107 bp
atggcgtcccagaacgacaccgccaccgccagatccggatccggatccaacggcgaggagcgtcgcaaggtggcgctgatcaccggaatcaccggccaggacggctcctacctgacggagttcctcctcaacaaaggctacgacgtccacggcctgatccgacgctcctccaacttcaacacccagcggatcaaccacatctacatcgacccccacaacgcccacaaggcccgcatgaagctccactacgccgacctcaccgacgcctcctccctccgccgctggctcgacaccatcgcccccgacgaggtctacaacctcgccgcccagtcccacgtcgccgtttccttcgagatccctgactacaccgccgacgtcgtcgccaccggcgccctccgcctcctcgaagccgtccgcaaccacgtcgacgccaccggaaggaccaatgtcaagtactaccaggccgggtcctccgagatgttcggggccaccccgcctccgcagtcggagacgacaccgtttcatccccgatccccttacgccgcctcgaaatgcgcggcgcactggtacaccgtgaactaccgcgaggcctacgggctctacgcctgcaatggcattctgtttaaccacgaatcgccgaggaggggagagaatttcgtgacccggaagatcactcgggccgtgggccggatcaaaatcgggctgcagagcaagctgttcttggggaatttgaatgcttcaagggattggggatttgctggtgactatgtggaggcaatgtggatgatgctacagcaggagaagcctgatgactatgttgtcgccaccgaggagtcgcacacggtggaggagttcttggaggtggcgtttgggtatgtggggatgaactggaaggatcacgttgtgcttgacaagaggtacttgaggccgtcggaggttgacaatctgaaaggggatgcaagcaaggcgaagaagattctcgggtggaagcccaaagttgggtttcagcagctggtgaagatgatggtggatgaagatgtcgaattggcaaagagggaaaaggttcttgttgatgctggatacatggatgcccagcaacaaccttga

Protein Analysis

368

Amino Acids

41.38

Weight (kDa)

6.87

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 818
AatII GACGTC 2 cut(s) 147, 378
AccB1I GGYRCC 1 cut(s) 389
AccI GTMKAC 2 cut(s) 312, 426
AccII CGCG 2 cut(s) 557, 585
AccIII TCCGGA 2 cut(s) 35, 41
AcoI YGGCCR 1 cut(s) 94
AcsI RAATTY 2 cut(s) 652, 727
AcyI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
AdeI CACNNNGTG 2 cut(s) 844, 904
AfaI GTAC 3 cut(s) 455, 569, 920
AfiI CCNNNNNNNGG 6 cut(s) 307, 438, 644, 687, 998, 999
AgsI TTSAA 3 cut(s) 178, 733, 741
AjiI CACGTC 2 cut(s) 337, 424
AjnI CCWGG 2 cut(s) 96, 459
AluBI AGCT 3 cut(s) 241, 715, 1012
AluI AGCT 3 cut(s) 241, 715, 1012
Alw26I GTCTC 1 cut(s) 503
AlwNI CAGNNNCTG 1 cut(s) 1012
Ama87I CYCGRG 2 cut(s) 675, 980
Aor13HI TCCGGA 2 cut(s) 35, 41
AoxI GGCC 9 cut(s) 94, 151, 228, 462, 486, 588, 678, 685, 926
ApeKI GCWGC 2 cut(s) 703, 1009
ApoI RAATTY 2 cut(s) 652, 727
Asp700I GAANNNNTTC 1 cut(s) 1062
AspLEI GCGC 4 cut(s) 76, 392, 557, 562
AspS9I GGNCC 6 cut(s) 229, 441, 468, 486, 678, 685
AsuC2I CCSGG 2 cut(s) 466, 664
AsuHPI GGTGA 5 cut(s) 73, 82, 250, 773, 1027
AvaI CYCGRG 2 cut(s) 675, 980
AvaII GGWCC 2 cut(s) 441, 468
BamHI GGATCC 2 cut(s) 38, 44
BanI GGYRCC 1 cut(s) 389
BanII GRGCYC 1 cut(s) 600
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbvI GCAGC 2 cut(s) 690, 1021
BccI CCATC 2 cut(s) 302, 1018
BceAI ACGGC 7 cut(s) 67, 118, 166, 326, 395, 665, 913
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 2 cut(s) 98, 461
BciVI GTATCC 1 cut(s) 1073
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 466, 664
BcoDI GTCTC 1 cut(s) 503
BfmI CTRYAG 2 cut(s) 704, 791
BfoI RGCGCY 2 cut(s) 77, 393
BfuI GTATCC 1 cut(s) 1073
BglI GCCNNNNNGGC 2 cut(s) 102, 227
BisI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
BlsI GCNGC 6 cut(s) 281, 325, 544, 559, 705, 1011
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 4 cut(s) 98, 461, 466, 664
Bme18I GGWCC 2 cut(s) 441, 468
BmeT110I CYCGRG 2 cut(s) 675, 980
BmgBI CACGTC 2 cut(s) 337, 424
BmgT120I GGNCC 6 cut(s) 229, 441, 468, 486, 678, 685
BmiI GGNNCC 6 cut(s) 40, 46, 106, 391, 469, 487
BmrFI CCNGG 4 cut(s) 98, 461, 466, 664
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 4 cut(s) 777, 946, 1063, 1078
BmuI ACTGGG 1 cut(s) 322
BoxI GACNNNNGTC 1 cut(s) 446
BpuEI CTTGAG 1 cut(s) 943
BpuMI CCSGG 2 cut(s) 466, 664
BsaBI GATNNNNATC 3 cut(s) 37, 43, 695
BsaHI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
BsaJI CCNNGG 4 cut(s) 148, 638, 681, 828
BsaWI WCCGGW 4 cut(s) 35, 41, 83, 434
BsaXI ACNNNNNCTCC 8 cut(s) 254, 284, 481, 511, 764, 794, 851, 881
Bsc4I CCNNNNNNNGG 6 cut(s) 307, 438, 644, 687, 998, 999
Bse118I RCCGGY 2 cut(s) 92, 386
Bse1I ACTGG 3 cut(s) 328, 569, 893
Bse3DI GCAATG 2 cut(s) 616, 783
Bse8I GATNNNNATC 3 cut(s) 37, 43, 695
BseAI TCCGGA 2 cut(s) 35, 41
BseBI CCWGG 2 cut(s) 98, 461
BseDI CCNNGG 4 cut(s) 148, 638, 681, 828
BseGI GGATG 6 cut(s) 523, 789, 888, 961, 1036, 1093
BseJI GATNNNNATC 3 cut(s) 37, 43, 695
BseLI CCNNNNNNNGG 6 cut(s) 307, 438, 644, 687, 998, 999
BseMI GCAATG 2 cut(s) 616, 783
BseNI ACTGG 3 cut(s) 328, 569, 893
BseRI GAGGAG 8 cut(s) 71, 116, 157, 259, 392, 655, 845, 863
BseXI GCAGC 2 cut(s) 690, 1021
BseYI CCCAGC 2 cut(s) 183, 1092
Bsh1236I CGCG 2 cut(s) 557, 585
BshFI GGCC 9 cut(s) 96, 153, 230, 464, 488, 590, 680, 687, 928
BshNI GGYRCC 1 cut(s) 389
BsiHKCI CYCGRG 2 cut(s) 675, 980
BsiSI CCGG 9 cut(s) 36, 42, 84, 93, 387, 435, 465, 664, 688
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 6 cut(s) 307, 438, 644, 687, 998, 999
BsmAI GTCTC 1 cut(s) 503
BsmBI CGTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 2 cut(s) 615, 739
BsnI GGCC 9 cut(s) 96, 153, 230, 464, 488, 590, 680, 687, 928
BsoBI CYCGRG 2 cut(s) 675, 980
Bsp1286I GDGCHC 1 cut(s) 600
Bsp13I TCCGGA 2 cut(s) 35, 41
BspANI GGCC 9 cut(s) 96, 153, 230, 464, 488, 590, 680, 687, 928
BspEI TCCGGA 2 cut(s) 35, 41
BspFNI CGCG 2 cut(s) 557, 585
BspLI GGNNCC 6 cut(s) 40, 46, 106, 391, 469, 487
BspMAI CTGCAG 1 cut(s) 708
BspT107I GGYRCC 1 cut(s) 389
BsrDI GCAATG 2 cut(s) 616, 783
BsrFI RCCGGY 2 cut(s) 92, 386
BsrI ACTGG 3 cut(s) 328, 569, 893
BssAI RCCGGY 2 cut(s) 92, 386
BssECI CCNNGG 4 cut(s) 148, 638, 681, 828
BssNI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
Bst2UI CCWGG 2 cut(s) 98, 461
Bst4CI ACNGT 3 cut(s) 519, 574, 844
BstACI GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
BstC8I GCNNGC 5 cut(s) 232, 284, 607, 713, 961
BstDSI CCRYGG 2 cut(s) 148, 681
BstF5I GGATG 6 cut(s) 523, 789, 888, 961, 1036, 1093
BstFNI CGCG 2 cut(s) 557, 585
BstH2I RGCGCY 2 cut(s) 77, 393
BstHHI GCGC 4 cut(s) 76, 392, 557, 562
BstMAI GTCTC 1 cut(s) 503
BstMWI GCNNNNNNNGC 7 cut(s) 102, 227, 389, 396, 712, 802, 965
BstNI CCWGG 2 cut(s) 98, 461
BstPAI GACNNNNGTC 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 96, 459, 464, 662
BstSFI CTRYAG 2 cut(s) 704, 791
BstUI CGCG 2 cut(s) 557, 585
BstV1I GCAGC 2 cut(s) 690, 1021
BstX2I RGATCY 4 cut(s) 32, 38, 44, 354
BstYI RGATCY 4 cut(s) 32, 38, 44, 354
BsuI GTATCC 1 cut(s) 1073
BsuRI GGCC 9 cut(s) 96, 153, 230, 464, 488, 590, 680, 687, 928
BtgI CCRYGG 2 cut(s) 148, 681
BtgZI GCGATG 1 cut(s) 280
BtrI CACGTC 2 cut(s) 337, 424
BtsCI GGATG 6 cut(s) 523, 789, 888, 961, 1036, 1093
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 5 cut(s) 232, 284, 607, 713, 961
CaiI CAGNNNCTG 1 cut(s) 1012
CfoI GCGC 4 cut(s) 76, 392, 557, 562
Cfr10I RCCGGY 2 cut(s) 92, 386
Cfr13I GGNCC 6 cut(s) 229, 441, 468, 486, 678, 685
CseI GACGC 4 cut(s) 50, 171, 272, 437
Csp6I GTAC 3 cut(s) 454, 568, 919
CviAII CATG 2 cut(s) 235, 1084
CviQI GTAC 3 cut(s) 454, 568, 919
DinI GGCGCC 1 cut(s) 391
DraIII CACNNNGTG 2 cut(s) 844, 904
DrdI GACNNNNNNGTC 1 cut(s) 818
DseDI GACNNNNNNGTC 1 cut(s) 818
EaeI YGGCCR 1 cut(s) 94
EciI GGCGGA 2 cut(s) 266, 386
Eco147I AGGCCT 1 cut(s) 590
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 441, 468
Eco88I CYCGRG 2 cut(s) 675, 980
EcoO109I RGGNCCY 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 96, 459
EcoT38I GRGCYC 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 2 cut(s) 238, 1087
FaiI YATR 5 cut(s) 236, 768, 816, 876, 1085
FalI AAGNNNNNCTT 4 cut(s) 704, 736, 905, 937
FaqI GGGAC 1 cut(s) 316
FatI CATG 2 cut(s) 234, 1083
FauI CCCGC 2 cut(s) 239, 501
FbaI TGATCA 1 cut(s) 78
FblI GTMKAC 2 cut(s) 312, 426
Fnu4HI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
FokI GGATG 6 cut(s) 510, 796, 895, 968, 1043, 1100
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
GlaI GCGC 4 cut(s) 75, 391, 556, 561
GluI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
GsaI CCCAGC 2 cut(s) 187, 1096
HaeII RGCGCY 2 cut(s) 77, 393
HaeIII GGCC 9 cut(s) 96, 153, 230, 464, 488, 590, 680, 687, 928
HapII CCGG 9 cut(s) 36, 42, 84, 93, 387, 435, 465, 664, 688
HgaI GACGC 4 cut(s) 50, 171, 272, 437
HhaI GCGC 4 cut(s) 76, 392, 557, 562
Hin1I GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
Hin1II CATG 2 cut(s) 238, 1087
Hin6I GCGC 4 cut(s) 74, 390, 555, 560
HinP1I GCGC 4 cut(s) 74, 390, 555, 560
HincII GTYRAC 2 cut(s) 427, 940
HindII GTYRAC 2 cut(s) 427, 940
HinfI GANTC 4 cut(s) 87, 632, 833, 976
HpaII CCGG 9 cut(s) 36, 42, 84, 93, 387, 435, 465, 664, 688
HphI GGTGA 5 cut(s) 73, 82, 250, 773, 1027
Hpy166II GTNNAC 6 cut(s) 148, 313, 427, 570, 577, 940
Hpy188I TCNGA 5 cut(s) 161, 475, 508, 934, 948
Hpy188III TCNNGA 4 cut(s) 36, 42, 352, 658
Hpy8I GTNNAC 6 cut(s) 148, 313, 427, 570, 577, 940
HpyAV CCTTC 3 cut(s) 358, 432, 886
HpyCH4III ACNGT 3 cut(s) 519, 574, 844
HpyCH4IV ACGT 5 cut(s) 144, 336, 375, 423, 900
HpyCH4V TGCA 3 cut(s) 609, 706, 959
HpyF10VI GCNNNNNNNGC 7 cut(s) 102, 227, 389, 396, 712, 802, 965
HpySE526I ACGT 5 cut(s) 144, 336, 375, 423, 900
Hsp92I GRCGYC 6 cut(s) 5, 144, 264, 375, 390, 429
Hsp92II CATG 2 cut(s) 238, 1087
HspAI GCGC 4 cut(s) 74, 390, 555, 560
KasI GGCGCC 1 cut(s) 389
Kpn2I TCCGGA 2 cut(s) 35, 41
Ksp22I TGATCA 1 cut(s) 78
LmnI GCTCC 4 cut(s) 58, 110, 170, 246
Lsp1109I GCAGC 2 cut(s) 690, 1021
LweI GCATC 4 cut(s) 777, 946, 1063, 1078
MaeII ACGT 5 cut(s) 144, 336, 375, 423, 900
MaeIII GTNAC 2 cut(s) 658, 761
MboII GAAGA 5 cut(s) 679, 982, 985, 1030, 1046
MflI RGATCY 4 cut(s) 32, 38, 44, 354
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 3 cut(s) 652, 727, 1043
Mly113I GGCGCC 1 cut(s) 390
MlyI GAGTC 1 cut(s) 842
MmeI TCCRAC 5 cut(s) 72, 184, 195, 486, 912
MroI TCCGGA 2 cut(s) 35, 41
MroXI GAANNNNTTC 1 cut(s) 1062
MseI TTAA 1 cut(s) 624
MspA1I CMGCKG 3 cut(s) 187, 282, 1012
MspI CCGG 9 cut(s) 36, 42, 84, 93, 387, 435, 465, 664, 688
MspR9I CCNGG 4 cut(s) 98, 461, 466, 664
MteI GCGCNGCGC 1 cut(s) 558
Mva1269I GAATGC 2 cut(s) 615, 739
MvaI CCWGG 2 cut(s) 98, 461
MvnI CGCG 2 cut(s) 557, 585
MwoI GCNNNNNNNGC 7 cut(s) 102, 227, 389, 396, 712, 802, 965
NarI GGCGCC 1 cut(s) 390
NciI CCSGG 2 cut(s) 466, 664
NlaIII CATG 2 cut(s) 238, 1087
NlaIV GGNNCC 6 cut(s) 40, 46, 106, 391, 469, 487
NmeAIII GCCGAG 1 cut(s) 663
NmuCI GTSAC 2 cut(s) 658, 761
PceI AGGCCT 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 2 cut(s) 615, 739
PdmI GAANNNNTTC 1 cut(s) 1062
PfeI GAWTC 3 cut(s) 87, 632, 976
PflFI GACNNNGTC 2 cut(s) 308, 377
PkrI GCNGC 6 cut(s) 281, 325, 544, 559, 705, 1011
PleI GAGTC 1 cut(s) 841
PluTI GGCGCC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 841
PpuMI RGGWCCY 1 cut(s) 468
PshAI GACNNNNGTC 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 96, 459
PspFI CCCAGC 2 cut(s) 183, 1092
PspGI CCWGG 2 cut(s) 96, 459
PspN4I GGNNCC 6 cut(s) 40, 46, 106, 391, 469, 487
PspPI GGNCC 6 cut(s) 229, 441, 468, 486, 678, 685
PspPPI RGGWCCY 1 cut(s) 468
PstI CTGCAG 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 1012
PsuI RGATCY 4 cut(s) 32, 38, 44, 354
PsyI GACNNNGTC 2 cut(s) 308, 377
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 3 cut(s) 455, 569, 920
RsaNI GTAC 3 cut(s) 454, 568, 919
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 6 cut(s) 280, 324, 543, 558, 704, 1010
Sau96I GGNCC 6 cut(s) 229, 441, 468, 486, 678, 685
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 1 cut(s) 842
ScrFI CCNGG 4 cut(s) 98, 461, 466, 664
SduI GDGCHC 1 cut(s) 600
SfaNI GCATC 4 cut(s) 777, 946, 1063, 1078
SfcI CTRYAG 2 cut(s) 704, 791
SfoI GGCGCC 1 cut(s) 391
SgrAI CRCCGGYG 1 cut(s) 386
SgrDI CGTCGACG 1 cut(s) 425
SinI GGWCC 2 cut(s) 441, 468
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
Sse9I AATT 3 cut(s) 652, 727, 1043
SseBI AGGCCT 1 cut(s) 590
SspDI GGCGCC 1 cut(s) 389
StuI AGGCCT 1 cut(s) 590
StyD4I CCNGG 4 cut(s) 96, 459, 464, 662
TaaI ACNGT 3 cut(s) 519, 574, 844
TaiI ACGT 5 cut(s) 147, 339, 378, 426, 903
TaqI TCGA 7 cut(s) 207, 288, 351, 405, 426, 548, 1041
TasI AATT 3 cut(s) 652, 727, 1043
TatI WGTACW 1 cut(s) 453
TauI GCSGC 4 cut(s) 282, 326, 545, 560
TfiI GAWTC 3 cut(s) 87, 632, 976
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 2 cut(s) 658, 761
TseI GCWGC 2 cut(s) 703, 1009
Tsp45I GTSAC 2 cut(s) 658, 761
TspDTI ATGAA 4 cut(s) 251, 512, 899, 1047
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 569
Tth111I GACNNNGTC 2 cut(s) 308, 377
VpaK11BI GGWCC 2 cut(s) 441, 468
XapI RAATTY 2 cut(s) 652, 727
XmiI GTMKAC 2 cut(s) 312, 426
XmnI GAANNNNTTC 1 cut(s) 1062
ZraI GACGTC 2 cut(s) 145, 376
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.