Rh2BG134400

GDP-mannose 4,6 dehydratase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
11463555 .. 11464667
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG134400.1

Sequence Viewer

Length: 1113 bp
ATGGCGTCCCAGAACGACACCGCCACCGCCGGATCCGGATCCGGATCCGGATCCAACGGCGAGGAGCGTCGCAAGGTGGCGCTGATCACCGGAATCACCGGCCAGGACGGCTCCTACCTGACGGAGTTCCTCCTCAACAAAGGCTACGACGTCCACGGCCTGATCCGACGCTCCTCCAACTTCAACACCCAGCGGATCAACCACATCTACATCGACCCCCACAACGCCCACAAGGCCCGCATGAAGCTCCACTACGCCGACCTCACCGACGCCTCCTCCCTCCGCCGCTGGCTCGACACCATCGCCCCCGACGAGGTCTACAACCTCGCCGCCCAGTCCCACGTCGCCGTTTCCTTCGAGATCCCTGACTACACCGCCGACGTCGTCGCCACCGGCGCCCTCCGCCTCCTCGAAGCCGTCCGCAACCACGTCGACGCCACCGGAAGGACCAATGTCAGGTACTACCAGGCCGGGTCCTCCGAGATGTTCGGGGCCACCCCGCCTCCGCAGTCGGAGACGACTCCGTTTCATCCCCGATCCCCTTACGCCGCCTCGAAATGCGCGGCGCACTGGTACACCGTGAACTACCGCGAGGCCTACGGGCTCTACGCCTGCAATGGGATTCTGTTTAACCACGAGTCGCCGAGGAGGGGAGAGAATTTCGTGACCCGGAAGATCACTCGGGCCGTGGGCCGGATCAAAATCGGGCTGCAGAGCAAGCTGTTCTTGGGGAATTTGAATGCTTCAAGGGATTGGGGATTTGCTGGTGACTATGTGGAGGCAATGTGGATGATGCTACAGAAGGAGAAGCCTGATGACTATGTTGTGGCCACCGAGGAGTCGCACACGGTGGAGGAGTTCTTGGAGGTGGCGTTTGGGTATGTGGGGATGAACTGGAAGGATCATGTTGTGCTTGACAAGAGGTACTTGAGGCCGTCGGAGGTTGACAATCTGAAAGGGGATGCAAGCAAGGCGAAGAAGATTCTCGGGTGGAAGCCCAAAGTTGGGTTTCAGCAGCTGGTGAAGATGATGGTGGATGAAGATGTCGAATTGGCAAAGAGGGAAAAGGTTCTTGTTGATGCTGGATACATGGATGCCCAGCAACAACCTTGA

Protein Analysis

370

Amino Acids

41.45

Weight (kDa)

6.87

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 27 - 277 1.4e-73 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 28 - 344 1.2e-139 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 153, 384
AccB1I GGYRCC 1 cut(s) 395
AccI GTMKAC 2 cut(s) 318, 432
AccII CGCG 2 cut(s) 563, 591
AccIII TCCGGA 3 cut(s) 35, 41, 47
AcoI YGGCCR 2 cut(s) 100, 828
AcsI RAATTY 2 cut(s) 658, 733
AcyI GRCGYC 6 cut(s) 5, 150, 270, 381, 396, 435
AdeI CACNNNGTG 1 cut(s) 850
AfaI GTAC 3 cut(s) 461, 575, 926
AfiI CCNNNNNNNGG 8 cut(s) 313, 444, 456, 618, 650, 693, 1004, 1005
AgsI TTSAA 3 cut(s) 184, 739, 747
AjiI CACGTC 2 cut(s) 343, 430
AjnI CCWGG 2 cut(s) 102, 465
AluBI AGCT 3 cut(s) 247, 721, 1018
AluI AGCT 3 cut(s) 247, 721, 1018
Alw26I GTCTC 1 cut(s) 509
AlwNI CAGNNNCTG 1 cut(s) 1018
Ama87I CYCGRG 2 cut(s) 681, 986
Aor13HI TCCGGA 3 cut(s) 35, 41, 47
ApeKI GCWGC 2 cut(s) 709, 1015
ApoI RAATTY 2 cut(s) 658, 733
Asp700I GAANNNNTTC 1 cut(s) 1068
AspLEI GCGC 4 cut(s) 82, 398, 563, 568
AspS9I GGNCC 6 cut(s) 235, 447, 474, 492, 684, 691
AsuC2I CCSGG 2 cut(s) 472, 670
AsuHPI GGTGA 5 cut(s) 79, 88, 256, 779, 1033
AvaI CYCGRG 2 cut(s) 681, 986
AvaII GGWCC 2 cut(s) 447, 474
BalI TGGCCA 1 cut(s) 830
BamHI GGATCC 4 cut(s) 32, 38, 44, 50
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 1 cut(s) 606
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BauI CACGAG 1 cut(s) 635
BbvI GCAGC 2 cut(s) 696, 1027
BccI CCATC 2 cut(s) 308, 1024
BceAI ACGGC 7 cut(s) 73, 124, 172, 332, 401, 671, 919
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 2 cut(s) 104, 467
BciVI GTATCC 1 cut(s) 1079
BclI TGATCA 1 cut(s) 84
BcnI CCSGG 2 cut(s) 472, 670
BcoDI GTCTC 1 cut(s) 509
BfmI CTRYAG 2 cut(s) 710, 797
BfoI RGCGCY 2 cut(s) 83, 399
BfuI GTATCC 1 cut(s) 1079
BglI GCCNNNNNGGC 2 cut(s) 108, 233
BisI GCNGC 6 cut(s) 286, 330, 549, 564, 710, 1016
BlsI GCNGC 6 cut(s) 287, 331, 550, 565, 711, 1017
Bme1390I CCNGG 4 cut(s) 104, 467, 472, 670
Bme18I GGWCC 2 cut(s) 447, 474
BmeT110I CYCGRG 2 cut(s) 681, 986
BmgBI CACGTC 2 cut(s) 343, 430
BmgT120I GGNCC 6 cut(s) 235, 447, 474, 492, 684, 691
BmiI GGNNCC 8 cut(s) 34, 40, 46, 52, 112, 397, 475, 493
BmrFI CCNGG 4 cut(s) 104, 467, 472, 670
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 4 cut(s) 783, 952, 1069, 1084
BmuI ACTGGG 1 cut(s) 328
BoxI GACNNNNGTC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 949
BpuMI CCSGG 2 cut(s) 472, 670
BsaBI GATNNNNATC 4 cut(s) 37, 43, 49, 701
BsaHI GRCGYC 6 cut(s) 5, 150, 270, 381, 396, 435
BsaJI CCNNGG 4 cut(s) 154, 644, 687, 834
BsaWI WCCGGW 5 cut(s) 35, 41, 47, 89, 440
BsaXI ACNNNNNCTCC 8 cut(s) 260, 290, 487, 517, 770, 800, 857, 887
Bsc4I CCNNNNNNNGG 8 cut(s) 313, 444, 456, 618, 650, 693, 1004, 1005
Bse118I RCCGGY 2 cut(s) 98, 392
Bse1I ACTGG 3 cut(s) 334, 575, 899
Bse3DI GCAATG 2 cut(s) 622, 789
Bse8I GATNNNNATC 4 cut(s) 37, 43, 49, 701
BseAI TCCGGA 3 cut(s) 35, 41, 47
BseBI CCWGG 2 cut(s) 104, 467
BseDI CCNNGG 4 cut(s) 154, 644, 687, 834
BseGI GGATG 6 cut(s) 529, 795, 894, 967, 1042, 1099
BseJI GATNNNNATC 4 cut(s) 37, 43, 49, 701
BseLI CCNNNNNNNGG 8 cut(s) 313, 444, 456, 618, 650, 693, 1004, 1005
BseMI GCAATG 2 cut(s) 622, 789
BseNI ACTGG 3 cut(s) 334, 575, 899
BseRI GAGGAG 8 cut(s) 77, 122, 163, 265, 398, 661, 851, 869
BseXI GCAGC 2 cut(s) 696, 1027
BseYI CCCAGC 2 cut(s) 189, 1098
Bsh1236I CGCG 2 cut(s) 563, 591
BshNI GGYRCC 1 cut(s) 395
BsiHKCI CYCGRG 2 cut(s) 681, 986
BslFI GGGAC 1 cut(s) 322
BslI CCNNNNNNNGG 8 cut(s) 313, 444, 456, 618, 650, 693, 1004, 1005
BsmAI GTCTC 1 cut(s) 509
BsmBI CGTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 745
BsoBI CYCGRG 2 cut(s) 681, 986
Bsp1286I GDGCHC 1 cut(s) 606
Bsp13I TCCGGA 3 cut(s) 35, 41, 47
BspEI TCCGGA 3 cut(s) 35, 41, 47
BspFNI CGCG 2 cut(s) 563, 591
BspLI GGNNCC 8 cut(s) 34, 40, 46, 52, 112, 397, 475, 493
BspMAI CTGCAG 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 2 cut(s) 622, 789
BsrFI RCCGGY 2 cut(s) 98, 392
BsrI ACTGG 3 cut(s) 334, 575, 899
BssAI RCCGGY 2 cut(s) 98, 392
BssECI CCNNGG 4 cut(s) 154, 644, 687, 834
BssNI GRCGYC 6 cut(s) 5, 150, 270, 381, 396, 435
BssSI CACGAG 1 cut(s) 635
Bst2BI CACGAG 1 cut(s) 635
Bst2UI CCWGG 2 cut(s) 104, 467
Bst4CI ACNGT 2 cut(s) 580, 850
BstACI GRCGYC 6 cut(s) 5, 150, 270, 381, 396, 435
BstC8I GCNNGC 5 cut(s) 238, 290, 613, 719, 967
BstDSI CCRYGG 2 cut(s) 154, 687
BstF5I GGATG 6 cut(s) 529, 795, 894, 967, 1042, 1099
BstFNI CGCG 2 cut(s) 563, 591
BstH2I RGCGCY 2 cut(s) 83, 399
BstHHI GCGC 4 cut(s) 82, 398, 563, 568
BstMAI GTCTC 1 cut(s) 509
BstMWI GCNNNNNNNGC 6 cut(s) 108, 233, 395, 402, 718, 971
BstNI CCWGG 2 cut(s) 104, 467
BstPAI GACNNNNGTC 1 cut(s) 452
BstSCI CCNGG 4 cut(s) 102, 465, 470, 668
BstSFI CTRYAG 2 cut(s) 710, 797
BstUI CGCG 2 cut(s) 563, 591
BstV1I GCAGC 2 cut(s) 696, 1027
BstX2I RGATCY 5 cut(s) 32, 38, 44, 50, 360
BstYI RGATCY 5 cut(s) 32, 38, 44, 50, 360
BsuI GTATCC 1 cut(s) 1079
BtgI CCRYGG 2 cut(s) 154, 687
BtgZI GCGATG 1 cut(s) 286
BtrI CACGTC 2 cut(s) 343, 430
BtsCI GGATG 6 cut(s) 529, 795, 894, 967, 1042, 1099
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 5 cut(s) 238, 290, 613, 719, 967
CaiI CAGNNNCTG 1 cut(s) 1018
CfoI GCGC 4 cut(s) 82, 398, 563, 568
Cfr10I RCCGGY 2 cut(s) 98, 392
Cfr13I GGNCC 6 cut(s) 235, 447, 474, 492, 684, 691
CseI GACGC 4 cut(s) 56, 177, 278, 443
Csp6I GTAC 3 cut(s) 460, 574, 925
CviAII CATG 3 cut(s) 241, 905, 1090
CviQI GTAC 3 cut(s) 460, 574, 925
DinI GGCGCC 1 cut(s) 397
DraIII CACNNNGTG 1 cut(s) 850
EaeI YGGCCR 2 cut(s) 100, 828
EciI GGCGGA 2 cut(s) 272, 392
Eco147I AGGCCT 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 606
Eco47I GGWCC 2 cut(s) 447, 474
Eco88I CYCGRG 2 cut(s) 681, 986
EcoO109I RGGNCCY 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 102, 465
EcoT38I GRGCYC 1 cut(s) 606
EgeI GGCGCC 1 cut(s) 397
EheI GGCGCC 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 3 cut(s) 244, 908, 1093
FaiI YATR 6 cut(s) 242, 774, 822, 882, 906, 1091
FalI AAGNNNNNCTT 4 cut(s) 710, 742, 911, 943
FaqI GGGAC 1 cut(s) 322
FatI CATG 3 cut(s) 240, 904, 1089
FauI CCCGC 2 cut(s) 245, 507
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 2 cut(s) 318, 432
Fnu4HI GCNGC 6 cut(s) 286, 330, 549, 564, 710, 1016
FokI GGATG 6 cut(s) 516, 802, 901, 974, 1049, 1106
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 6 cut(s) 286, 330, 549, 564, 710, 1016
GlaI GCGC 4 cut(s) 81, 397, 562, 567
GluI GCNGC 6 cut(s) 286, 330, 549, 564, 710, 1016
GsaI CCCAGC 2 cut(s) 193, 1102
HaeII RGCGCY 2 cut(s) 83, 399
HgaI GACGC 4 cut(s) 56, 177, 278, 443
HhaI GCGC 4 cut(s) 82, 398, 563, 568
Hin1I GRCGYC 6 cut(s) 5, 150, 270, 381, 396, 435
Hin1II CATG 3 cut(s) 244, 908, 1093
Hin6I GCGC 4 cut(s) 80, 396, 561, 566
HinP1I GCGC 4 cut(s) 80, 396, 561, 566
HincII GTYRAC 2 cut(s) 433, 946
HindII GTYRAC 2 cut(s) 433, 946
HinfI GANTC 6 cut(s) 93, 520, 622, 638, 839, 982
HphI GGTGA 5 cut(s) 79, 88, 256, 779, 1033
Hpy166II GTNNAC 6 cut(s) 154, 319, 433, 576, 583, 946
Hpy188I TCNGA 5 cut(s) 167, 481, 514, 940, 954
Hpy188III TCNNGA 5 cut(s) 36, 42, 48, 358, 664
Hpy8I GTNNAC 6 cut(s) 154, 319, 433, 576, 583, 946
HpyAV CCTTC 4 cut(s) 364, 438, 796, 892
HpyCH4III ACNGT 2 cut(s) 580, 850
HpyCH4IV ACGT 4 cut(s) 150, 342, 381, 429
HpyCH4V TGCA 3 cut(s) 615, 712, 965
HpyF10VI GCNNNNNNNGC 6 cut(s) 108, 233, 395, 402, 718, 971
HpySE526I ACGT 4 cut(s) 150, 342, 381, 429
Hsp92I GRCGYC 6 cut(s) 5, 150, 270, 381, 396, 435
Hsp92II CATG 3 cut(s) 244, 908, 1093
HspAI GCGC 4 cut(s) 80, 396, 561, 566
KasI GGCGCC 1 cut(s) 395
Kpn2I TCCGGA 3 cut(s) 35, 41, 47
Ksp22I TGATCA 1 cut(s) 84
LmnI GCTCC 4 cut(s) 64, 116, 176, 252
Lsp1109I GCAGC 2 cut(s) 696, 1027
LweI GCATC 4 cut(s) 783, 952, 1069, 1084
MaeII ACGT 4 cut(s) 150, 342, 381, 429
MaeIII GTNAC 2 cut(s) 664, 767
MboII GAAGA 5 cut(s) 685, 988, 991, 1036, 1052
MflI RGATCY 5 cut(s) 32, 38, 44, 50, 360
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 1 cut(s) 830
MluCI AATT 3 cut(s) 658, 733, 1049
MluNI TGGCCA 1 cut(s) 830
Mly113I GGCGCC 1 cut(s) 396
MlyI GAGTC 3 cut(s) 514, 647, 848
MmeI TCCRAC 5 cut(s) 78, 190, 201, 492, 918
Mox20I TGGCCA 1 cut(s) 830
MroI TCCGGA 3 cut(s) 35, 41, 47
MroXI GAANNNNTTC 1 cut(s) 1068
MscI TGGCCA 1 cut(s) 830
MseI TTAA 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 830
MspA1I CMGCKG 3 cut(s) 193, 288, 1018
MspR9I CCNGG 4 cut(s) 104, 467, 472, 670
MteI GCGCNGCGC 1 cut(s) 564
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 2 cut(s) 104, 467
MvnI CGCG 2 cut(s) 563, 591
MwoI GCNNNNNNNGC 6 cut(s) 108, 233, 395, 402, 718, 971
NarI GGCGCC 1 cut(s) 396
NciI CCSGG 2 cut(s) 472, 670
NlaIII CATG 3 cut(s) 244, 908, 1093
NlaIV GGNNCC 8 cut(s) 34, 40, 46, 52, 112, 397, 475, 493
NmeAIII GCCGAG 1 cut(s) 669
NmuCI GTSAC 2 cut(s) 664, 767
PceI AGGCCT 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 3 cut(s) 93, 622, 982
PflFI GACNNNGTC 2 cut(s) 314, 383
PkrI GCNGC 6 cut(s) 287, 331, 550, 565, 711, 1017
PleI GAGTC 3 cut(s) 514, 646, 847
PluTI GGCGCC 1 cut(s) 399
PpsI GAGTC 3 cut(s) 514, 646, 847
PpuMI RGGWCCY 1 cut(s) 474
PshAI GACNNNNGTC 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 102, 465
PspFI CCCAGC 2 cut(s) 189, 1098
PspGI CCWGG 2 cut(s) 102, 465
PspN4I GGNNCC 8 cut(s) 34, 40, 46, 52, 112, 397, 475, 493
PspPI GGNCC 6 cut(s) 235, 447, 474, 492, 684, 691
PspPPI RGGWCCY 1 cut(s) 474
PstI CTGCAG 1 cut(s) 714
PstNI CAGNNNCTG 1 cut(s) 1018
PsuI RGATCY 5 cut(s) 32, 38, 44, 50, 360
PsyI GACNNNGTC 2 cut(s) 314, 383
PvuII CAGCTG 1 cut(s) 1018
RsaI GTAC 3 cut(s) 461, 575, 926
RsaNI GTAC 3 cut(s) 460, 574, 925
SalI GTCGAC 1 cut(s) 431
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 6 cut(s) 286, 330, 549, 564, 710, 1016
Sau96I GGNCC 6 cut(s) 235, 447, 474, 492, 684, 691
SchI GAGTC 3 cut(s) 514, 647, 848
ScrFI CCNGG 4 cut(s) 104, 467, 472, 670
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 4 cut(s) 783, 952, 1069, 1084
SfcI CTRYAG 2 cut(s) 710, 797
SfoI GGCGCC 1 cut(s) 397
SgrAI CRCCGGYG 1 cut(s) 392
SgrDI CGTCGACG 1 cut(s) 431
SinI GGWCC 2 cut(s) 447, 474
SmlI CTYRAG 1 cut(s) 928
SmoI CTYRAG 1 cut(s) 928
Sse9I AATT 3 cut(s) 658, 733, 1049
SseBI AGGCCT 1 cut(s) 596
SspDI GGCGCC 1 cut(s) 395
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 4 cut(s) 102, 465, 470, 668
TaaI ACNGT 2 cut(s) 580, 850
TaiI ACGT 4 cut(s) 153, 345, 384, 432
TaqI TCGA 7 cut(s) 213, 294, 357, 411, 432, 554, 1047
TasI AATT 3 cut(s) 658, 733, 1049
TauI GCSGC 4 cut(s) 288, 332, 551, 566
TfiI GAWTC 3 cut(s) 93, 622, 982
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 575
TseFI GTSAC 2 cut(s) 664, 767
TseI GCWGC 2 cut(s) 709, 1015
Tsp45I GTSAC 2 cut(s) 664, 767
TspDTI ATGAA 4 cut(s) 257, 518, 905, 1053
TspGWI ACGGA 2 cut(s) 137, 513
TspRI CASTG 1 cut(s) 575
Tth111I GACNNNGTC 2 cut(s) 314, 383
VpaK11BI GGWCC 2 cut(s) 447, 474
XapI RAATTY 2 cut(s) 658, 733
XmiI GTMKAC 2 cut(s) 318, 432
XmnI GAANNNNTTC 1 cut(s) 1068
ZraI GACGTC 2 cut(s) 151, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.