AT5G66280

GDP-mannose

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26476166 .. 26477754
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66280.1

Sequence Viewer

Length: 1086 bp
ATGGCCTCCAGATCTCTCAATGGCGATTCCGACATTGTGAAGCCGAGGAAGATTGCACTGGTCACCGGAATCACTGGCCAAGATGGATCTTACCTGACCGAGTTCCTGCTCGAGAAAGGCTACGAAGTTCACGGCCTCATCCGACGATCCTCCAATTTTAACACTCAGCGACTCAACCATATCTACGTTGATCCCCACAACGTCAACAAAGCTCTCATGAAGCTCCACTACGGTGATCTCTCTGATGCCTCCTCCCTCCGCCGTTGGCTCGACGTCATCAAGCCTGACGAGGTCTACAACCTTGCTGCTCAGTCCCACGTTGCCGTCTCCTTCGAGATCCCTGATTACACTGCTGACGTTGTCGCTACTGGAGCTCTTCGTCTCCTGGAGGCTGTCAGATCTCACAACATTGACAATGGCCGCGCCATCAAGTACTACCAGGCTGGCTCTTCGGAGATGTTCGGGTCAACTCCTCCTCCGCAGTCAGAGACCACGCCCTTCCATCCGAGATCTCCCTACGCTGCGTCCAAATGCGCTGCTCATTGGTACACAGTCAATTACCGAGAGGCCTACGGTCTGTACGCCTGCAACGGAATCCTCTTCAACCACGAGTCACCTCGCAGAGGCGAGAACTTCGTGACTCGGAAAATCACTCGGGCCTTGGGAAGGATCAAGGTCGGATTGCAGACCAAGCTCTTCCTGGGAAATATACAGGCTTCAAGAGACTGGGGTTTCGCAGGAGACTACGTGGAAGCAATGTGGCTGATGCTGCAGCAGGAGAAACCAGATGACTATGTGGTTGCAACTGAGGAATCACACACCGTCAAGGAGTTTCTGGACGTGTCTTTCGGGTACGTGGGGCTCAACTGGAAAGACCATGTCGAGATCGACAAAAGGTACTTCCGGCCCACGGAGGTCGACAATCTGAAAGGAGACGCAAGCAAGGCAAAGGAAATGTTGGGGTGGAAGCCAAAAGTAGGGTTCGAGAAGCTGGTGAAGATGATGGTGGACGAAGACCTTGAGCTGGCCAAGAGGGAGAAAGTGCTCGCCGACGCTGGTTACATGGACGCTCAGCAGCAACCTTGA

Protein Analysis

361

Amino Acids

40.85

Weight (kDa)

6.61

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 19 - 268 6.4e-73 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 20 - 335 1.2e-140 GDP-mannose 4,6 dehydratase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013261)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AccI GTMKAC 2 cut(s) 294, 918
AccII CGCG 1 cut(s) 423
AciI CCGC 3 cut(s) 259, 421, 479
AclWI GGATC 5 cut(s) 94, 141, 185, 331, 677
AcoI YGGCCR 3 cut(s) 76, 418, 1026
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 5 cut(s) 434, 548, 581, 854, 899
AfiI CCNNNNNNNGG 5 cut(s) 623, 666, 910, 977, 1024
AflIII ACRYGT 1 cut(s) 840
AgsI TTSAA 2 cut(s) 604, 720
AjiI CACGTC 1 cut(s) 841
AjnI CCWGG 3 cut(s) 384, 438, 699
AleI CACNNNNGTG 1 cut(s) 231
AluBI AGCT 6 cut(s) 212, 223, 374, 694, 991, 1024
AluI AGCT 6 cut(s) 212, 223, 374, 694, 991, 1024
Alw21I GWGCWC 2 cut(s) 376, 1047
Alw26I GTCTC 6 cut(s) 331, 386, 482, 717, 735, 927
AlwI GGATC 5 cut(s) 94, 141, 185, 331, 677
Ama87I CYCGRG 2 cut(s) 110, 654
AoxI GGCC 8 cut(s) 3, 76, 133, 418, 567, 657, 905, 1026
ApeKI GCWGC 6 cut(s) 305, 521, 536, 769, 772, 1075
ArsI GACNNNNNNTTYG 4 cut(s) 716, 748, 830, 862
AspLEI GCGC 2 cut(s) 425, 536
AspS9I GGNCC 2 cut(s) 657, 906
AsuHPI GGTGA 4 cut(s) 55, 245, 606, 1006
AvaI CYCGRG 2 cut(s) 110, 654
BalI TGGCCA 2 cut(s) 78, 1028
BanII GRGCYC 2 cut(s) 376, 864
BarI GAAGNNNNNNTAC 2 cut(s) 212, 244
BauI CACGAG 1 cut(s) 608
BbsI GAAGAC 1 cut(s) 1020
Bbv12I GWGCWC 2 cut(s) 376, 1047
BbvI GCAGC 5 cut(s) 292, 508, 523, 756, 784
BccI CCATC 4 cut(s) 77, 434, 510, 997
BceAI ACGGC 3 cut(s) 148, 246, 308
BciT130I CCWGG 3 cut(s) 386, 440, 701
BcoDI GTCTC 6 cut(s) 331, 386, 482, 717, 735, 927
BfmI CTRYAG 1 cut(s) 770
BglII AGATCT 3 cut(s) 11, 398, 509
BisI GCNGC 7 cut(s) 306, 421, 522, 537, 770, 773, 1076
BlpI GCTNAGC 1 cut(s) 1071
BlsI GCNGC 7 cut(s) 307, 422, 523, 538, 771, 774, 1077
BmcAI AGTACT 1 cut(s) 434
Bme1390I CCNGG 3 cut(s) 386, 440, 701
BmeT110I CYCGRG 2 cut(s) 110, 654
BmgBI CACGTC 1 cut(s) 841
BmgT120I GGNCC 2 cut(s) 657, 906
BmrFI CCNGG 3 cut(s) 386, 440, 701
BmrI ACTGGG 1 cut(s) 736
BmsI GCATC 2 cut(s) 235, 756
BmuI ACTGGG 1 cut(s) 736
BpiI GAAGAC 1 cut(s) 1020
BpmI CTGGAG 2 cut(s) 390, 407
Bpu1102I GCTNAGC 1 cut(s) 1071
BpuEI CTTGAG 1 cut(s) 1040
BsaAI YACGTR 2 cut(s) 748, 856
BsaHI GRCGYC 1 cut(s) 273
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 44, 660, 700, 909
BsaWI WCCGGW 1 cut(s) 65
BsaXI ACNNNNNCTCC 4 cut(s) 460, 490, 732, 762
Bsc4I CCNNNNNNNGG 5 cut(s) 623, 666, 910, 977, 1024
Bse1I ACTGG 5 cut(s) 63, 79, 373, 731, 872
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 3 cut(s) 386, 440, 701
BseDI CCNNGG 4 cut(s) 44, 660, 700, 909
BseGI GGATG 2 cut(s) 138, 502
BseLI CCNNNNNNNGG 5 cut(s) 623, 666, 910, 977, 1024
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 4 cut(s) 179, 323, 798, 1085
BseNI ACTGG 5 cut(s) 63, 79, 373, 731, 872
BseRI GAGGAG 3 cut(s) 241, 462, 465
BseXI GCAGC 5 cut(s) 292, 508, 523, 756, 784
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 8 cut(s) 5, 78, 135, 420, 569, 659, 907, 1028
BsiHKAI GWGCWC 2 cut(s) 376, 1047
BsiHKCI CYCGRG 2 cut(s) 110, 654
BsiSI CCGG 2 cut(s) 66, 904
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 5 cut(s) 623, 666, 910, 977, 1024
BsmAI GTCTC 6 cut(s) 331, 386, 482, 717, 735, 927
BsmBI CGTCTC 3 cut(s) 331, 386, 927
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 8 cut(s) 5, 78, 135, 420, 569, 659, 907, 1028
Bso31I GGTCTC 1 cut(s) 482
BsoBI CYCGRG 2 cut(s) 110, 654
Bsp1286I GDGCHC 3 cut(s) 376, 864, 1047
Bsp1720I GCTNAGC 1 cut(s) 1071
BspACI CCGC 3 cut(s) 259, 421, 479
BspANI GGCC 8 cut(s) 5, 78, 135, 420, 569, 659, 907, 1028
BspCNI CTCAG 4 cut(s) 178, 322, 799, 1084
BspFNI CGCG 1 cut(s) 423
BspHI TCATGA 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 774
BspPI GGATC 5 cut(s) 94, 141, 185, 331, 677
BspQI GCTCTTC 3 cut(s) 381, 454, 701
BspTNI GGTCTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 762
BsrI ACTGG 5 cut(s) 63, 79, 373, 731, 872
BssECI CCNNGG 4 cut(s) 44, 660, 700, 909
BssNI GRCGYC 1 cut(s) 273
BssSI CACGAG 1 cut(s) 608
BssT1I CCWWGG 1 cut(s) 660
Bst2BI CACGAG 1 cut(s) 608
Bst2UI CCWGG 3 cut(s) 386, 440, 701
Bst4CI ACNGT 4 cut(s) 233, 553, 575, 823
Bst6I CTCTTC 4 cut(s) 381, 454, 605, 701
BstACI GRCGYC 1 cut(s) 273
BstBAI YACGTR 2 cut(s) 748, 856
BstC8I GCNNGC 5 cut(s) 445, 586, 940, 1026, 1047
BstDEI CTNAG 4 cut(s) 165, 309, 807, 1071
BstDSI CCRYGG 1 cut(s) 909
BstEII GGTNACC 1 cut(s) 61
BstENI CCTNNNNNAGG 2 cut(s) 621, 664
BstF5I GGATG 2 cut(s) 138, 502
BstFNI CGCG 1 cut(s) 423
BstHHI GCGC 2 cut(s) 425, 536
BstMAI GTCTC 6 cut(s) 331, 386, 482, 717, 735, 927
BstMWI GCNNNNNNNGC 4 cut(s) 371, 691, 769, 944
BstNI CCWGG 3 cut(s) 386, 440, 701
BstPI GGTNACC 1 cut(s) 61
BstSCI CCNGG 3 cut(s) 384, 438, 699
BstSFI CTRYAG 1 cut(s) 770
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 5 cut(s) 292, 508, 523, 756, 784
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 5 cut(s) 11, 86, 336, 398, 509
BstYI RGATCY 5 cut(s) 11, 86, 336, 398, 509
BsuRI GGCC 8 cut(s) 5, 78, 135, 420, 569, 659, 907, 1028
BtgI CCRYGG 1 cut(s) 909
BtrI CACGTC 1 cut(s) 841
BtsCI GGATG 2 cut(s) 138, 502
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 3 cut(s) 56, 72, 348
Cac8I GCNNGC 5 cut(s) 445, 586, 940, 1026, 1047
CciI TCATGA 1 cut(s) 216
CfoI GCGC 2 cut(s) 425, 536
Cfr13I GGNCC 2 cut(s) 657, 906
CseI GACGC 4 cut(s) 513, 944, 1061, 1076
Csp6I GTAC 5 cut(s) 433, 547, 580, 853, 898
CviAII CATG 3 cut(s) 217, 878, 1063
CviQI GTAC 5 cut(s) 433, 547, 580, 853, 898
DdeI CTNAG 4 cut(s) 165, 309, 807, 1071
EaeI YGGCCR 3 cut(s) 76, 418, 1026
Eam1104I CTCTTC 4 cut(s) 381, 454, 605, 701
EarI CTCTTC 4 cut(s) 381, 454, 605, 701
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 374
Eco130I CCWWGG 1 cut(s) 660
Eco147I AGGCCT 1 cut(s) 569
Eco24I GRGCYC 2 cut(s) 376, 864
Eco31I GGTCTC 1 cut(s) 482
Eco53kI GAGCTC 1 cut(s) 374
Eco88I CYCGRG 2 cut(s) 110, 654
Eco91I GGTNACC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 374
EcoNI CCTNNNNNAGG 2 cut(s) 621, 664
EcoO65I GGTNACC 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 384, 438, 699
EcoT14I CCWWGG 1 cut(s) 660
EcoT38I GRGCYC 2 cut(s) 376, 864
ErhI CCWWGG 1 cut(s) 660
Esp3I CGTCTC 3 cut(s) 331, 386, 927
FaeI CATG 3 cut(s) 220, 881, 1066
FaiI YATR 6 cut(s) 180, 218, 710, 795, 879, 1064
FaqI GGGAC 1 cut(s) 298
FatI CATG 3 cut(s) 216, 877, 1062
FblI GTMKAC 2 cut(s) 294, 918
Fnu4HI GCNGC 7 cut(s) 306, 421, 522, 537, 770, 773, 1076
FokI GGATG 2 cut(s) 125, 489
FriOI GRGCYC 2 cut(s) 376, 864
Fsp4HI GCNGC 7 cut(s) 306, 421, 522, 537, 770, 773, 1076
GlaI GCGC 2 cut(s) 424, 535
GluI GCNGC 7 cut(s) 306, 421, 522, 537, 770, 773, 1076
GsuI CTGGAG 2 cut(s) 390, 407
HaeIII GGCC 8 cut(s) 5, 78, 135, 420, 569, 659, 907, 1028
HapII CCGG 2 cut(s) 66, 904
HgaI GACGC 4 cut(s) 513, 944, 1061, 1076
HhaI GCGC 2 cut(s) 425, 536
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 3 cut(s) 220, 881, 1066
Hin6I GCGC 2 cut(s) 423, 534
HinP1I GCGC 2 cut(s) 423, 534
HincII GTYRAC 3 cut(s) 205, 468, 919
HindII GTYRAC 3 cut(s) 205, 468, 919
HinfI GANTC 7 cut(s) 26, 69, 171, 594, 611, 640, 812
HpaII CCGG 2 cut(s) 66, 904
HphI GGTGA 4 cut(s) 55, 245, 606, 1006
Hpy166II GTNNAC 7 cut(s) 130, 205, 295, 468, 549, 919, 1009
Hpy188III TCNNGA 9 cut(s) 9, 112, 217, 334, 637, 720, 836, 883, 985
Hpy8I GTNNAC 7 cut(s) 130, 205, 295, 468, 549, 919, 1009
Hpy99I CGWCG 3 cut(s) 147, 275, 1055
HpyAV CCTTC 3 cut(s) 340, 508, 660
HpyCH4III ACNGT 4 cut(s) 233, 553, 575, 823
HpyCH4IV ACGT 8 cut(s) 186, 201, 273, 318, 357, 747, 840, 855
HpyCH4V TGCA 5 cut(s) 56, 588, 685, 772, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 691, 769, 944
HpyF3I CTNAG 4 cut(s) 165, 309, 807, 1071
HpySE526I ACGT 8 cut(s) 186, 201, 273, 318, 357, 747, 840, 855
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 3 cut(s) 220, 881, 1066
HspAI GCGC 2 cut(s) 423, 534
LguI GCTCTTC 3 cut(s) 381, 454, 701
LmnI GCTCC 2 cut(s) 228, 371
Lsp1109I GCAGC 5 cut(s) 292, 508, 523, 756, 784
LweI GCATC 2 cut(s) 235, 756
MaeII ACGT 8 cut(s) 186, 201, 273, 318, 357, 747, 840, 855
MaeIII GTNAC 4 cut(s) 61, 612, 637, 1058
MboII GAAGA 7 cut(s) 61, 368, 441, 592, 688, 1009, 1025
MflI RGATCY 5 cut(s) 11, 86, 336, 398, 509
MhlI GDGCHC 3 cut(s) 376, 864, 1047
MlsI TGGCCA 2 cut(s) 78, 1028
MluCI AATT 2 cut(s) 154, 556
MluNI TGGCCA 2 cut(s) 78, 1028
MlyI GAGTC 3 cut(s) 165, 620, 634
MmeI TCCRAC 3 cut(s) 54, 166, 658
Mox20I TGGCCA 2 cut(s) 78, 1028
MscI TGGCCA 2 cut(s) 78, 1028
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 2 cut(s) 78, 1028
MspI CCGG 2 cut(s) 66, 904
MspR9I CCNGG 3 cut(s) 386, 440, 701
MvaI CCWGG 3 cut(s) 386, 440, 701
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 4 cut(s) 371, 691, 769, 944
NlaIII CATG 3 cut(s) 220, 881, 1066
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 3 cut(s) 61, 612, 637
OliI CACNNNNGTG 1 cut(s) 231
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 1 cut(s) 216
PceI AGGCCT 1 cut(s) 569
PciSI GCTCTTC 3 cut(s) 381, 454, 701
PfeI GAWTC 4 cut(s) 26, 69, 594, 812
PflFI GACNNNGTC 3 cut(s) 290, 359, 878
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 7 cut(s) 307, 422, 523, 538, 771, 774, 1077
PleI GAGTC 3 cut(s) 165, 619, 634
PpsI GAGTC 3 cut(s) 165, 619, 634
Ppu21I YACGTR 2 cut(s) 748, 856
Psp124BI GAGCTC 1 cut(s) 376
Psp6I CCWGG 3 cut(s) 384, 438, 699
PspEI GGTNACC 1 cut(s) 61
PspGI CCWGG 3 cut(s) 384, 438, 699
PspPI GGNCC 2 cut(s) 657, 906
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 5 cut(s) 11, 86, 336, 398, 509
PsyI GACNNNGTC 3 cut(s) 290, 359, 878
RsaI GTAC 5 cut(s) 434, 548, 581, 854, 899
RsaNI GTAC 5 cut(s) 433, 547, 580, 853, 898
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 376
SalI GTCGAC 1 cut(s) 917
SapI GCTCTTC 3 cut(s) 381, 454, 701
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 7 cut(s) 306, 421, 522, 537, 770, 773, 1076
Sau96I GGNCC 2 cut(s) 657, 906
ScaI AGTACT 1 cut(s) 434
SchI GAGTC 3 cut(s) 165, 620, 634
ScrFI CCNGG 3 cut(s) 386, 440, 701
SduI GDGCHC 3 cut(s) 376, 864, 1047
SfaNI GCATC 2 cut(s) 235, 756
SfcI CTRYAG 1 cut(s) 770
Sfr274I CTCGAG 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 110
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 110, 1019
SmoI CTYRAG 2 cut(s) 110, 1019
Sse9I AATT 2 cut(s) 154, 556
SseBI AGGCCT 1 cut(s) 569
SsiI CCGC 3 cut(s) 259, 421, 479
SstI GAGCTC 1 cut(s) 376
StuI AGGCCT 1 cut(s) 569
StyD4I CCNGG 3 cut(s) 384, 438, 699
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 4 cut(s) 233, 553, 575, 823
TaiI ACGT 8 cut(s) 189, 204, 276, 321, 360, 750, 843, 858
TaqI TCGA 7 cut(s) 111, 270, 333, 882, 888, 918, 984
TaqII GACCGA 1 cut(s) 113
TasI AATT 2 cut(s) 154, 556
TatI WGTACW 1 cut(s) 432
TauI GCSGC 1 cut(s) 423
TfiI GAWTC 4 cut(s) 26, 69, 594, 812
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 3 cut(s) 63, 79, 355
TseFI GTSAC 3 cut(s) 61, 612, 637
TseI GCWGC 6 cut(s) 305, 521, 536, 769, 772, 1075
Tsp45I GTSAC 3 cut(s) 61, 612, 637
TspDTI ATGAA 1 cut(s) 233
TspGWI ACGGA 2 cut(s) 606, 926
TspRI CASTG 3 cut(s) 63, 79, 355
Tth111I GACNNNGTC 3 cut(s) 290, 359, 878
XagI CCTNNNNNAGG 2 cut(s) 621, 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XhoI CTCGAG 1 cut(s) 110
XmiI GTMKAC 2 cut(s) 294, 918
ZraI GACGTC 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.